Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,231,441 A→G intergenic (+202/‑224) ygjK → / → fadH glycoside hydrolase/2,4‑dienoyl‑CoA reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,231,4410AG100.0% 288.2 / NA 84intergenic (+202/‑224)ygjK/fadHglycoside hydrolase/2,4‑dienoyl‑CoA reductase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (34/50);  total (34/50)

CGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGAATCCCATCACAAACC  >  NC_000913/3231304‑3231575
                                                                                                                                         |                                                                                                                                       
cGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGcc                                                                                                                                       >  1:124261/1‑140 (MQ=255)
  gATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGcgccgc                                                                                                                                     >  1:1081838/1‑140 (MQ=255)
  gATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGcgccgc                                                                                                                                     <  1:493049/140‑1 (MQ=255)
   aTAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCcgcg                                                                                                                                    <  1:798828/140‑1 (MQ=255)
      aaaCGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCa                                                                                                                                 <  2:312898/140‑1 (MQ=255)
             gCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCgg                                                                                                                          <  1:589561/140‑1 (MQ=255)
             gCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCgg                                                                                                                          >  2:889958/1‑140 (MQ=255)
             gCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCgg                                                                                                                          >  2:1126585/1‑140 (MQ=255)
              cAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGa                                                                                                                         <  1:1703128/140‑1 (MQ=255)
                  cGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTCTCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACACGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATgcg                                                                                                                     <  2:2098474/140‑1 (MQ=255)
                     tGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATgcggcg                                                                                                                  <  2:124261/140‑1 (MQ=255)
                       cATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTg                                                                                                                <  2:1295421/140‑1 (MQ=255)
                       cATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTg                                                                                                                <  2:146764/140‑1 (MQ=255)
                       cATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTg                                                                                                                <  2:321956/140‑1 (MQ=255)
                         tCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGa                                                                                                              <  1:1126585/140‑1 (MQ=255)
                            ggCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCCCTGGCGGAAGCGGCGGGGgcgc                                                                                                           >  2:1086752/1‑140 (MQ=21)
                             gCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGcc                                                                                                          <  1:200732/140‑1 (MQ=255)
                                aCTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTa                                                                                                       <  2:979119/140‑1 (MQ=255)
                                aCTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTa                                                                                                       <  2:2072609/140‑1 (MQ=255)
                                 cTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCGGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTAt                                                                                                      <  1:2251847/140‑1 (MQ=255)
                                 cTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTAt                                                                                                      <  2:896479/140‑1 (MQ=255)
                                  tGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATc                                                                                                     <  2:164640/140‑1 (MQ=255)
                                     aCCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGc                                                                                                  <  1:1448943/140‑1 (MQ=255)
                                      ccGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGcc                                                                                                 <  2:2259977/140‑1 (MQ=255)
                                         cgcCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGGTAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGAGTCGGCGCGGGCGCCCTTTcccccccc                                                                                              >  2:491530/1‑138 (MQ=18)
                                            cACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGGCCCCCTTTCCCCCCCACAt                                                                                           >  2:1987863/1‑140 (MQ=18)
                                                      tGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTcc                                                                                >  1:456300/1‑140 (MQ=255)
                                                      tGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGATCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTcc                                                                                <  2:2139400/140‑1 (MQ=255)
                                                        cggcgTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGt                                                                              <  1:1931631/140‑1 (MQ=255)
                                                        cggcgTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGt                                                                              >  1:661268/1‑140 (MQ=255)
                                                        cggcgTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGACGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGt                                                                              <  2:2259009/140‑1 (MQ=255)
                                                           cgTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAAc                                                                           >  1:981817/1‑140 (MQ=255)
                                                                   ccTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATaa                                                                   >  1:2340171/1‑140 (MQ=255)
                                                                      tATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAAc                                                                <  1:1093093/140‑1 (MQ=255)
                                                                       aTCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGGCGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAAcc                                                               >  2:2077136/1‑139 (MQ=255)
                                                                       aTCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGGGGGCCCCTTATCCCCCCCACATGTGC‑AATTCCGTAACCCTGATAAAAcc                                                               >  2:93133/1‑139 (MQ=18)
                                                                            ccttACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGGGGCGTGGACGCCCTATCCGCCCTAAATGTGA‑AATTCCCGAAACTGGATAAAAAGCGACa                                                          >  2:2257021/4‑140 (MQ=37)
                                                                            cccTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACa                                                          <  1:1444192/140‑1 (MQ=255)
                                                                                 cATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGt                                                     <  2:215782/140‑1 (MQ=255)
                                                                                 cATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGt                                                     <  2:456300/140‑1 (MQ=255)
                                                                                  aTGTGTGTACCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTc                                                    <  2:2007785/140‑1 (MQ=255)
                                                                                      gtgtTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCAt                                                <  2:1147648/140‑1 (MQ=255)
                                                                                       tgtTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGGCGCCCTATCCCCCCCACATGTGC‑AATTTCGTAACCCGGGTAAAAAGCGACAAACGTCGCCTc                                               >  2:1164859/1‑140 (MQ=18)
                                                                                       tgtTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATc                                               <  1:1178012/140‑1 (MQ=255)
                                                                                       tgtTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCCCCCCACATTTGC‑AATTCCGTAACCTGGGAAAAAAGCGACAAACGTCGccgc                                               >  2:1296849/1‑137 (MQ=18)
                                                                                       tgtTCCCGAAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATc                                               >  2:858539/1‑140 (MQ=255)
                                                                                        gtTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATcc                                              <  1:1086752/140‑1 (MQ=255)
                                                                                        gtTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATcc                                              <  1:889958/140‑1 (MQ=255)
                                                                                        gtTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATcc                                              <  2:661268/140‑1 (MQ=255)
                                                                                         ttCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGt                                                     >  2:2285954/1‑132 (MQ=255)
                                                                                         ttCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGt                                                     <  1:2285954/132‑1 (MQ=255)
                                                                                         ttCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATcc                                              <  2:1617646/139‑1 (MQ=255)
                                                                                         ttCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATcc                                              >  1:1617646/1‑139 (MQ=255)
                                                                                           cccGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGGCGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTTGATAAAAAGCGACAAGCGGCCCATCCGGc                                           >  2:959963/1‑140 (MQ=18)
                                                                                           cccGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGGCGCCCTTTCCCCCCTACCTGTGCAAATTCCTAAACCT‑GATAAAAAGCGCCAAACGCCGCCTcccgg                                           >  2:1188304/1‑137 (MQ=17)
                                                                                           cccGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGc                                           >  1:1379106/1‑140 (MQ=255)
                                                                                           cccGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGc                                           >  1:2055189/1‑140 (MQ=255)
                                                                                           cccGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGc                                           >  2:1953516/1‑140 (MQ=255)
                                                                                           cccGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCCACATGTGC‑AATTCCGTAAACTGGATAAAACGCGACAAGCGTCGCATCCGGc                                           >  2:1456181/1‑140 (MQ=255)
                                                                                           cccGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGGGGGCGCCTTATCCGCCCTACATGTGC‑AATTCCGTAAACCGGATAAAAAGCGGCAAACGTCGCATCCGGc                                           >  2:1092785/1‑140 (MQ=17)
                                                                                            ccGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCg                                          <  1:1058951/140‑1 (MQ=255)
                                                                                            ccGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCg                                          >  1:1556654/1‑140 (MQ=255)
                                                                                               tAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTa                                       >  2:1654063/1‑140 (MQ=255)
                                                                                               tAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTa                                       <  1:167442/140‑1 (MQ=255)
                                                                                                 ggTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGGCGCCCTTTTCGCCCCACATTTGG‑AATTCCCTAACCTGGATAAAAAACGACAAACGTCGCATCCGGCGGTAtt                                     >  2:1178012/1‑139 (MQ=18)
                                                                                                 ggTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCCTAACCTGGATAAAACGCGACAAGGGGCGCATCCGGCGTTATc                                     >  2:2167058/1‑140 (MQ=255)
                                                                                                   tCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCAc                                   <  2:1780824/140‑1 (MQ=255)
                                                                                                   tCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCAc                                   <  2:981817/140‑1 (MQ=255)
                                                                                                   tCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCAc                                   <  2:1279510/140‑1 (MQ=255)
                                                                                                   tCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCAc                                   <  1:959963/140‑1 (MQ=255)
                                                                                                   tCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCAc                                   <  2:1622415/140‑1 (MQ=255)
                                                                                                   tCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCAc                                   <  2:823794/140‑1 (MQ=255)
                                                                                                   tCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCAc                                   <  1:1953516/140‑1 (MQ=255)
                                                                                                      gATAAGACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCgg                                >  1:2172073/1‑140 (MQ=255)
                                                                                                           gACGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTa                           <  1:1296849/140‑1 (MQ=255)
                                                                                                            aCGCGACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTAt                          >  1:1011264/1‑140 (MQ=255)
                                                                                                             cgcgACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGGCGCCTTATCCGCCCCACATGTGC‑AAATCCGTAACCTGGATAAAACGCGACAAACGTCGCATCCGGCGGTATCACCCGGCGGAtt                         >  2:2046552/1‑140 (MQ=18)
                                                                                                             cgcgACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTAtt                         <  1:1654063/140‑1 (MQ=255)
                                                                                                              gcgACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTc                        <  1:858539/140‑1 (MQ=255)
                                                                                                                gACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGGCGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCtt                      >  2:999205/1‑140 (MQ=255)
                                                                                                                gACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCtt                      >  1:1930072/1‑140 (MQ=255)
                                                                                                                gACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCtt                      >  1:255238/1‑140 (MQ=255)
                                                                                                                gACAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCCACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCtt                      >  2:2025232/1‑140 (MQ=255)
                                                                                                                 aCAAGCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCttt                     >  1:1236402/1‑140 (MQ=255)
                                                                                                                     gCGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGa                 >  1:619872/1‑140 (MQ=255)
                                                                                                                      cGTCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGaa                <  1:2257021/140‑1 (MQ=255)
                                                                                                                        tCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGAATc              <  1:1523634/140‑1 (MQ=255)
                                                                                                                        tCGCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGAATc              <  2:1011264/140‑1 (MQ=255)
                                                                                                                          gCATCCGGCATCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGAATccc            <  2:1556654/140‑1 (MQ=255)
                                                                                                                                    tCTGCGCCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGAATCCCATCACAAAcc  <  1:2344185/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
CGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCCCTACATGTGTGTTCCCGTAGGTCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCACTGGCGGATGCGGCGTGGACGCCTTATCCGCCCTACATGTGC‑AATTCCGTAACCTGGATAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGAATCCCATCACAAACC  >  NC_000913/3231304‑3231575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A