Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,240,406 T→C W155R (TGG→CGG)  sstT → serine/threonine:Na(+) symporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,240,4060TC100.0% 670.3 / NA 184W155R (TGG→CGG) sstTserine/threonine:Na(+) symporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (97/87);  total (97/87)

Only 100 of 190 total aligned reads displayed.

CCCTGCATTTATCCAGTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGTGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCACCGATTGGTATTTTTGGGCTGGT  >  NC_000913/3240269‑3240542
                                                                                                                                         |                                                                                                                                        
 ccTGCATTTATCCAGTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCggg                                                                                                                                       >  2:979747/1‑140 (MQ=255)
   tGCATTTATCCAGTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCg                                                                                                                                     >  1:1014332/1‑140 (MQ=255)
   tGCATTTATCCAGTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCg                                                                                                                                     >  1:69268/1‑140 (MQ=255)
   tGCATTTATCCAGTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCg                                                                                                                                     >  1:52372/1‑140 (MQ=255)
   tGCATTTATCCAGTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCg                                                                                                                                     >  1:2070412/1‑140 (MQ=255)
   tGCATTTATCCAGTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCg                                                                                                                                     >  1:2060165/1‑140 (MQ=255)
   tGCATTTATCCAGTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCg                                                                                                                                     >  1:1559219/1‑140 (MQ=255)
    gCATTTATCCAGTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGa                                                                                                                                    <  1:900252/140‑1 (MQ=255)
    gCATTTATCCAGTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGa                                                                                                                                    <  2:709243/140‑1 (MQ=255)
    gCATTTATCCAGTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGa                                                                                                                                    <  2:686198/140‑1 (MQ=255)
    gCATTTATCCAGTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGa                                                                                                                                    <  1:1178664/140‑1 (MQ=255)
     cATTTATCCAGTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGAt                                                                                                                                   >  2:2283481/1‑140 (MQ=255)
       tttATCCAGTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCg                                                                                                                                 >  2:1652935/1‑140 (MQ=255)
           tCCAGTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCt                                                                                                                             <  2:649925/140‑1 (MQ=255)
           tCCAGTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCt                                                                                                                             <  1:1652935/140‑1 (MQ=255)
           tCCAGTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCt                                                                                                                             <  2:2060165/140‑1 (MQ=255)
               gTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGc                                                                                                                         >  2:1859591/1‑140 (MQ=255)
               gTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGc                                                                                                                         >  1:319394/1‑140 (MQ=255)
               gTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGc                                                                                                                         >  2:1197768/1‑140 (MQ=255)
               gTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGc                                                                                                                         >  2:1627812/1‑140 (MQ=255)
               gTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGc                                                                                                                         >  2:1826015/1‑140 (MQ=255)
                tAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCt                                                                                                                        >  1:2138509/1‑140 (MQ=255)
                     cgGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCa                                                                                                                   >  2:2280168/1‑140 (MQ=255)
                     cgGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCa                                                                                                                   <  1:1505965/140‑1 (MQ=255)
                       ggTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACt                                                                                                                 >  2:1031688/1‑140 (MQ=255)
                        gTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTg                                                                                                                >  1:1448857/1‑140 (MQ=255)
                         tGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTT‑CAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCg                                                                                                              <  1:2004818/140‑1 (MQ=255)
                            tatTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTc                                                                                                            <  2:798773/140‑1 (MQ=255)
                              tttCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCAc                                                                                                          <  1:1010467/140‑1 (MQ=255)
                                   ccgccgTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTaa                                                                                                     >  1:2080570/1‑140 (MQ=255)
                                    cgccgTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGTCGATCGGCCTCGGCTTCGCAc                                                                                                                  <  2:1708801/126‑1 (MQ=255)
                                    cgccgTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCAc                                                                                                                  >  1:1708801/1‑126 (MQ=255)
                                    cgccgTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAAc                                                                                                    <  1:533409/140‑1 (MQ=255)
                                       cgTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACgag                                                                                                 <  2:619745/140‑1 (MQ=255)
                                         tCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGac                                                                                               <  1:325820/140‑1 (MQ=255)
                                         tCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGac                                                                                               <  1:979747/140‑1 (MQ=255)
                                         tCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGATAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGac                                                                                               <  1:2283481/140‑1 (MQ=255)
                                                   tCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAAc                                                                                     >  2:346272/1‑140 (MQ=255)
                                                    cGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAAcc                                                                                    <  2:2132099/140‑1 (MQ=255)
                                                    cGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAAcc                                                                                    <  2:72172/140‑1 (MQ=255)
                                                       aGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTgg                                                                                 >  2:2028100/1‑140 (MQ=255)
                                                        gTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGt                                                                                <  1:1733689/140‑1 (MQ=255)
                                                         tGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGtt                                                                               <  2:2070426/140‑1 (MQ=255)
                                                           aTGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTaa                                                                             >  1:2273650/1‑140 (MQ=255)
                                                             gcgcGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACg                                                                           >  1:704906/1‑140 (MQ=255)
                                                                  ggCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATg                                                                      >  1:1046970/1‑140 (MQ=255)
                                                                      ggTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGa                                                                  <  2:492541/140‑1 (MQ=255)
                                                                         aaTGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATg                                                               <  2:1097966/140‑1 (MQ=255)
                                                                             aGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGat                                                                         >  1:2394190/1‑126 (MQ=255)
                                                                             aGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGat                                                                         <  2:2394190/126‑1 (MQ=255)
                                                                             aGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGaa                                                                 >  2:1618556/1‑134 (MQ=255)
                                                                             aGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGt                                                           >  2:2333708/1‑140 (MQ=255)
                                                                             aGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGt                                                           >  2:18433/1‑140 (MQ=255)
                                                                             aGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGt                                                           <  1:1488886/140‑1 (MQ=255)
                                                                             aGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGt                                                           >  1:574082/1‑140 (MQ=255)
                                                                             aGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGt                                                           >  1:1288548/1‑140 (MQ=255)
                                                                             aGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGt                                                           >  1:1097126/1‑140 (MQ=255)
                                                                             aGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGt                                                           >  1:895543/1‑140 (MQ=255)
                                                                               cATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTa                                                         <  1:1638871/140‑1 (MQ=255)
                                                                               cATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTa                                                         <  2:1014332/140‑1 (MQ=255)
                                                                               cATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTa                                                         >  1:803405/1‑140 (MQ=255)
                                                                                 tGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTAcc                                                       >  2:2214066/1‑140 (MQ=255)
                                                                                 tGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTAcc                                                       >  1:775823/1‑140 (MQ=255)
                                                                                   gTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGCCCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCtt                                                     <  2:2143895/140‑1 (MQ=255)
                                                                                   gTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCtt                                                     <  2:2328252/140‑1 (MQ=255)
                                                                                   gTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCtt                                                     <  1:1826015/140‑1 (MQ=255)
                                                                                       ccAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAAt                                                                <  2:1066801/125‑1 (MQ=255)
                                                                                       ccAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGt                                                           >  1:2153619/1‑130 (MQ=255)
                                                                                       ccAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACC‑AAAACCTGGTTAACGATATGTCGAATGCCGt                                                           <  2:1218254/129‑1 (MQ=255)
                                                                                         aaCCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGt                                               <  1:1346868/140‑1 (MQ=255)
                                                                                           ccccATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGa                                             <  1:3998/140‑1 (MQ=255)
                                                                                              cATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAAc                                          >  2:2067625/1‑140 (MQ=255)
                                                                                              cATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAAc                                          >  1:232214/1‑140 (MQ=255)
                                                                                              cATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAAc                                          >  2:784777/1‑140 (MQ=255)
                                                                                              cATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAAc                                          <  1:1620369/140‑1 (MQ=255)
                                                                                              cATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAAc                                          <  2:1168013/140‑1 (MQ=255)
                                                                                                     gcgcTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCAt                                   <  2:2081978/140‑1 (MQ=255)
                                                                                                     gcgcTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCAt                                   <  1:1214702/140‑1 (MQ=255)
                                                                                                     gcgcTGCTGAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCAt                                   <  1:346272/140‑1 (MQ=255)
                                                                                                           ctgAAAGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCGCGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCAttcgctt                             >  2:2150359/1‑140 (MQ=255)
                                                                                                               aaGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCa                         <  2:1310936/140‑1 (MQ=255)
                                                                                                               aaGGTAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCa                         <  2:319394/140‑1 (MQ=255)
                                                                                                                   tAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCACCGa                     >  1:2192969/1‑140 (MQ=255)
                                                                                                                   tAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCACCGa                     >  2:44648/1‑140 (MQ=255)
                                                                                                                   tAACTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCACCGa                     <  2:1486440/140‑1 (MQ=255)
                                                                                                                    aaCTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCACCGAt                    <  2:1288548/140‑1 (MQ=255)
                                                                                                                    aaCTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCACCGAt                    <  2:1413416/140‑1 (MQ=255)
                                                                                                                    aaCTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCACCGAt                    <  2:918087/140‑1 (MQ=255)
                                                                                                                     aCTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCACCg                      <  2:407068/137‑1 (MQ=255)
                                                                                                                     aCTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCACCGAtt                   >  1:989555/1‑140 (MQ=255)
                                                                                                                     aCTACATCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCACCGAtt                   >  2:576437/1‑140 (MQ=255)
                                                                                                                          aTCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCACCGATTGGTAt              >  1:2073721/1‑140 (MQ=255)
                                                                                                                          aTCGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCACCGATTGGTAt              >  2:809954/1‑140 (MQ=255)
                                                                                                                            cGGGATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCACCGATTGGTAttt            >  1:1968975/1‑140 (MQ=255)
                                                                                                                             gggATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCACCGATTGGTAtttt           >  2:1555078/1‑140 (MQ=255)
                                                                                                                              ggATTCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCACCGATTGGTAttttt          >  1:2348029/1‑140 (MQ=255)
                                                                                                                                 ttCTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCACCGATTGGTATTTTTggg       <  1:1919535/140‑1 (MQ=255)
                                                                                                                                   cTGGTGCGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCACCGATTGGTATTTTTGGGCt     >  1:1592730/1‑140 (MQ=255)
                                                                                                                                      gtgcGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTGGCACCGATTGGTATTTTTGGGCTGGt  <  2:775823/140‑1 (MQ=255)
                                                                                                                                      gtgcGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCACCGATTGGTATTTTTGGGCTGGt  <  1:2103894/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
CCCTGCATTTATCCAGTAGCGCGGGTGATATTTCGCCGCCGTCAGGCATTGTCGAAGTGATGCGCGGGCTGGTAATGAGCATGGTTTCCAACCCCATCGACGCGCTGCTGAAAGGTAACTACATCGGGATTCTGGTGTGGGCGATCGGCCTCGGCTTCGCACTGCGTCACGGTAACGAGACCACCAAAAACCTGGTTAACGATATGTCGAATGCCGTTACCTTTATGGTGAAACTGGTCATTCGCTTCGCACCGATTGGTATTTTTGGGCTGGT  >  NC_000913/3240269‑3240542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A