Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,250,078	T→C	R132R (CGT→CGC) M1A (GTG→GCG) †	yqjE → yqjK →	conserved inner membrane protein YqjE conserved protein YqjK

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,250,078	0	T	C	100.0%	671.5 / NA	184	R132R (CGT→CGC) M1A (GTG→GCG) †	yqjE yqjK	conserved inner membrane protein YqjE conserved protein YqjK
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (97/87); total (97/87)

Only 100 of 184 total aligned reads displayed.

GCCACCACCGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAATAT  >  NC_000913/3249941‑3250210

 ccaccaCCGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAg                                                                                                                                   <  2:200577/140‑1 (MQ=255)

       ccGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTaa                                                                                                                             >  2:523801/1‑140 (MQ=255)

        cGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTaaa                                                                                                                            >  1:144138/1‑140 (MQ=255)

         gtggtgTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAg                                                                                                                           >  1:2238215/1‑140 (MQ=255)

          tggtgTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGt                                                                                                                          >  2:1713137/1‑140 (MQ=255)

               ttGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAATTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAAc                                                                                                                     <  1:348969/140‑1 (MQ=255)

               ttGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAAc                                                                                                                     >  2:279936/1‑140 (MQ=255)

               ttGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAAc                                                                                                                     >  2:1055783/1‑140 (MQ=255)

                 gctgctACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGt                                                                                                                   >  1:1991906/1‑140 (MQ=255)

                 gctgctACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGt                                                                                                                   >  1:283877/1‑140 (MQ=255)

                    gctACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGaa                                                                                                                >  2:1835108/1‑140 (MQ=255)

                    gctACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGaa                                                                                                                <  2:861855/140‑1 (MQ=255)

                    gctACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGaa                                                                                                                <  1:1416992/140‑1 (MQ=255)

                     ctACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAac                                                                                                               >  2:1640729/1‑140 (MQ=255)

                      tACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAacg                                                                                                              >  1:1732251/1‑140 (MQ=255)

                       aCTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAacga                                                                                                             >  1:670966/1‑140 (MQ=255)

                         tGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAacgacg                                                                                                           <  2:919760/140‑1 (MQ=255)

                           gCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTa                                                                                                         >  1:1762326/1‑140 (MQ=255)

                             aCTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAg                                                                                                       >  2:2098242/1‑140 (MQ=255)

                             aCTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAg                                                                                                       <  1:2333003/140‑1 (MQ=255)

                             aCTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAg                                                                                                       <  1:523801/140‑1 (MQ=255)

                                 aTTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTa                                                                                                         <  2:2240820/134‑1 (MQ=255)

                                 aTTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTa                                                                                                         >  1:2240820/1‑134 (MQ=255)

                                 aTTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGgcgc                                                                                                   >  2:2344124/1‑140 (MQ=255)

                                  ttGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCa                                                                                                  <  1:385520/140‑1 (MQ=255)

                                  ttGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCa                                                                                                  <  1:1047265/140‑1 (MQ=255)

                                  ttGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCa                                                                                                  <  1:1214237/140‑1 (MQ=255)

                                  ttGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCa                                                                                                  <  1:1134966/140‑1 (MQ=255)

                                      cGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTg                                                                                              <  2:518369/140‑1 (MQ=255)

                                      cGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTg                                                                                              <  2:623997/140‑1 (MQ=255)

                                         tATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCtt                                                                                           <  2:1412353/140‑1 (MQ=255)

                                             tGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGcc                                                                                       <  2:283877/140‑1 (MQ=255)

                                              ggACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCa                                                                                      <  1:1488606/140‑1 (MQ=255)

                                               gACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAg                                                                                     >  1:2115039/1‑140 (MQ=255)

                                                   cTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAATGCGCAACTGCTTAGCCAGATcc                                                                                 >  1:1702754/1‑140 (MQ=255)

                                                   cTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATcc                                                                                 >  1:1584170/1‑140 (MQ=255)

                                                   cTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATcc                                                                                 >  1:1301311/1‑140 (MQ=255)

                                                   cTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTACTTAGCCAGATcc                                                                                 >  1:506850/1‑140 (MQ=255)

                                                   cTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAACAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATcc                                                                                 >  2:913195/1‑140 (MQ=255)

                                                    tACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCa                                                                                                  >  1:1850415/1‑122 (MQ=255)

                                                    tACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCa                                                                                                  <  2:1850415/122‑1 (MQ=255)

                                                    tACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCa                                                                                <  2:2115039/140‑1 (MQ=255)

                                                      cGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGc                                                                              >  1:1859377/1‑140 (MQ=255)

                                                         aaaTCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGcaac                                                                           <  2:144138/140‑1 (MQ=255)

                                                          aaTCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGcaaca                                                                          <  2:1301311/140‑1 (MQ=255)

                                                          aaTCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGcaaca                                                                          <  1:1620256/140‑1 (MQ=255)

                                                          aaTCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAACAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGcaaca                                                                          <  1:913195/140‑1 (MQ=255)

                                                              gcgTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACgg                                                                      >  2:901779/1‑140 (MQ=255)

                                                                gTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCt                                                                    >  2:177550/1‑140 (MQ=255)

                                                                gTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCt                                                                    >  2:221306/1‑140 (MQ=255)

                                                                gTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCt                                                                    <  2:1584170/140‑1 (MQ=255)

                                                                       tACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACgg                                                                      <  1:1259387/131‑1 (MQ=255)

                                                                            tgctgcGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGTGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGc                                                        <  2:1656216/140‑1 (MQ=255)

                                                                            tgctgcGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGc                                                        <  1:1394291/140‑1 (MQ=255)

                                                                              ctgcGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTcc                                                          <  1:910262/136‑1 (MQ=255)

                                                                              ctgcGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCa                                                      >  2:1540712/1‑140 (MQ=255)

                                                                              ctgcGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCa                                                      >  2:1631724/1‑140 (MQ=255)

                                                                              ctgcGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCa                                                      >  1:775434/1‑140 (MQ=255)

                                                                              ctgcGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCa                                                      >  1:740949/1‑140 (MQ=255)

                                                                              ctgcGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCa                                                      >  1:1794272/1‑140 (MQ=255)

                                                                                    cATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAgtcgtc                                                <  1:2053231/140‑1 (MQ=255)

                                                                                      tACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTcgtcgt                                              >  2:19670/1‑140 (MQ=255)

                                                                                       acacGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTg                                             <  1:1055783/140‑1 (MQ=255)

                                                                                         acGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGaa                                           <  1:837054/140‑1 (MQ=255)

                                                                                           gCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGaa                                           >  2:665134/1‑138 (MQ=255)

                                                                                           gCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATg                                         >  1:1967012/1‑140 (MQ=255)

                                                                                            ccATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATgg                                        <  1:435056/140‑1 (MQ=255)

                                                                                             cATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGc                                       >  2:820862/1‑140 (MQ=255)

                                                                                               tGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTg                                     <  1:1631724/140‑1 (MQ=255)

                                                                                               tGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTg                                     >  2:762632/1‑140 (MQ=255)

                                                                                                gAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGaa                                           >  1:1172455/1‑133 (MQ=255)

                                                                                                gAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTgg                                    >  2:2327479/1‑140 (MQ=255)

                                                                                                gAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTgg                                    >  1:294518/1‑140 (MQ=255)

                                                                                                 aGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGga                                   >  2:25744/1‑140 (MQ=255)

                                                                                                   ttAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGgaga                                 >  2:1745219/1‑140 (MQ=255)

                                                                                                     aGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGaca                               >  2:207153/1‑140 (MQ=255)

                                                                                                     aGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGaca                               >  1:2374272/1‑140 (MQ=255)

                                                                                                       cAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGacaac                             >  2:316860/1‑140 (MQ=255)

                                                                                                       cAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTACTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGacaac                             <  2:506850/140‑1 (MQ=255)

                                                                                                        aaaCGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGacaaca                            <  2:747201/140‑1 (MQ=255)

                                                                                                         aaCGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAg                           <  2:696983/140‑1 (MQ=255)

                                                                                                         aaCGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAg                           >  2:1253995/1‑140 (MQ=255)

                                                                                                          aCGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAgg                          <  1:901779/140‑1 (MQ=255)

                                                                                                           cGATCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTAAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGgc                         >  1:1903556/1‑140 (MQ=255)

                                                                                                             aTCGGCAGCTGCTCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGgcgc                       >  1:1316969/1‑140 (MQ=255)

                                                                                                                       gctCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGAtcgt             <  1:2098242/140‑1 (MQ=255)

                                                                                                                        ctCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGAtcgtc            >  1:2304817/1‑140 (MQ=255)

                                                                                                                        ctCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGAtcgtc            >  2:567050/1‑140 (MQ=255)

                                                                                                                        ctCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGAtcgtc            >  1:300131/1‑140 (MQ=255)

                                                                                                                         tCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGAtcgtcg           <  2:42949/140‑1 (MQ=255)

                                                                                                                         tCGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGAtcgtcg           <  1:1662613/140‑1 (MQ=255)

                                                                                                                          cGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGAtcgt             <  2:2224712/137‑1 (MQ=255)

                                                                                                                          cGAGGAGGAGTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGAtcgt             >  1:2224712/1‑137 (MQ=255)

                                                                                                                              gaggagTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGa      <  1:279682/140‑1 (MQ=255)

                                                                                                                               aggagTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGaa     >  2:1512054/1‑140 (MQ=255)

                                                                                                                                ggagTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAat    >  2:1160562/1‑140 (MQ=255)

                                                                                                                                  agTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATTGTCGCTGGAatat  <  1:2028002/140‑1 (MQ=255)

                                                                                                                                  agTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAatat  <  1:661286/140‑1 (MQ=255)

                                                                                                                                  agTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAatat  >  1:1767555/1‑140 (MQ=255)

                                                                                                                                  agTCCCGCGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAatat  >  2:358676/1‑140 (MQ=255)

GCCACCACCGTGGTGTTGCTGCTACTGGCACTGATTGGCGGTATCTGGACGCTACGTAAATCGCGTAAGTCTACGTTGCTGCGCCATACACGCCATGAGTTAGCAAACGATCGGCAGCTGCTCGAGGAGGAGTCCCGTGAGCAGTAAAGTCGAACGTGAACGACGTAAGGCGCAACTGCTTAGCCAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAATAT  >  NC_000913/3249941‑3250210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A