Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,319,940	G→A	G435D (GGC→GAC)	argG →	argininosuccinate synthetase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,319,940	0	G	A	100.0%	657.9 / NA	185	G435D (GGC→GAC)	argG	argininosuccinate synthetase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (91/94); total (91/94)

Only 100 of 186 total aligned reads displayed.

GGAAAAAGGCGACTCGGTGTTCTCGCCAGATGATCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGGCGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCTTATCCTCTGTAAACTCCTTTCTGAGCATCACATAATCGAAAACATCATGGTTTG  >  NC_000913/3319803‑3320076

ggAAAAAGGCGACTCGGTGTTCTCGCCAGATGATCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACg                                                                                                                                        >  1:1563882/1‑140 (MQ=255)

 gAAAAAGGCGACTCGGTGTTCTCGCCAGATGATCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGt                                                                                                                                       >  2:940099/1‑140 (MQ=255)

  aaaaaGGCGACTCGGTGTTCTCGCCAGATGATCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTg                                                                                                                                      >  1:1710302/1‑140 (MQ=255)

   aaaaGGCGACTCGGTGTTCTCGCCAGATGATCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGc                                                                                                                                     <  1:448456/140‑1 (MQ=255)

   aaaaGGCGACTCGGTGTTCTCGCCAGATGATCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGc                                                                                                                                     <  2:2101921/140‑1 (MQ=255)

     aaGGCGACTCGGTGTTCTCGCCAGATGATCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCTTCTGCCGCTTCAGACGTGCCg                                                                                                                                   <  2:1710302/140‑1 (MQ=255)

     aaGGCGACTCGGTGTTCTCGCCAGATGATCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCg                                                                                                                                   <  1:1431819/140‑1 (MQ=255)

     aaGGCGACTCGGTGTTCTCGCCAGATGATCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCg                                                                                                                                   <  2:1563882/140‑1 (MQ=255)

           aCTCGGTGTTCTCGCCAGATGATCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAgg                                                                                                                               <  1:2117478/138‑1 (MQ=255)

           aCTCGGTGTTCTCGCCAGATGATCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTg                                                                                                                             >  1:1790962/1‑140 (MQ=255)

            cTCGGTGTTCTCGCCAGATGATCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTgg                                                                                                                            <  1:1966495/140‑1 (MQ=255)

             tCGGTGTTCTCGCCAGATGATCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGga                                                                                                                           >  2:286271/1‑140 (MQ=255)

                         ccAGATGATCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGaaaa                                                                                                               >  1:1401502/1‑140 (MQ=255)

                          cAGATGATCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAAc                                                                                                              >  2:416166/1‑140 (MQ=255)

                          cAGATGATCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAAc                                                                                                              >  2:1909868/1‑140 (MQ=255)

                           aGATGATCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACa                                                                                                             <  1:641264/140‑1 (MQ=255)

                           aGATGATCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACa                                                                                                             <  1:723839/140‑1 (MQ=255)

                             atgatCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGga                                                                                                                           >  2:388919/1‑124 (MQ=255)

                             atgatCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAAt                                                                                                                       <  2:217150/128‑1 (MQ=255)

                             atgatCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACaaa                                                                                                           <  1:479587/140‑1 (MQ=255)

                              tgatCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAg                                                                                                          <  1:286271/140‑1 (MQ=255)

                               gatCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAgg                                                                                                         <  1:1167352/140‑1 (MQ=255)

                               gatCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAgg                                                                                                         <  1:609198/140‑1 (MQ=255)

                                atCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGc                                                                                                        <  1:837490/140‑1 (MQ=255)

                                 tCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGcc                                                                                                       <  2:485308/140‑1 (MQ=255)

                                 tCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGcc                                                                                                       <  2:2002926/140‑1 (MQ=255)

                                  cGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCa                                                                                                      >  1:1851486/1‑140 (MQ=255)

                                  cGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCa                                                                                                      <  2:113540/140‑1 (MQ=255)

                                    tATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGt                                                                                                    >  1:559188/1‑140 (MQ=255)

                                      ttGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTaa                                                                                                  >  2:1014591/1‑140 (MQ=255)

                                        ggTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAAtt                                                                                                <  1:149308/140‑1 (MQ=255)

                                        ggTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAAtt                                                                                                <  1:1462073/140‑1 (MQ=255)

                                         gTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTc                                                                                               >  1:520509/1‑140 (MQ=255)

                                         gTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTc                                                                                               >  2:2046872/1‑140 (MQ=255)

                                         gTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTc                                                                                               <  1:2046872/140‑1 (MQ=255)

                                         gTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTc                                                                                               >  2:655048/1‑140 (MQ=255)

                                            aaTTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGAc                                                                                            >  1:1725/1‑140 (MQ=255)

                                            aaTTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGAc                                                                                            >  2:819012/1‑140 (MQ=255)

                                              ttGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACAt                                                                                          >  2:869033/1‑140 (MQ=255)

                                              ttGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACAt                                                                                          >  2:328107/1‑140 (MQ=255)

                                              ttGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACAt                                                                                          <  1:1715413/140‑1 (MQ=255)

                                              ttGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACAt                                                                                          <  1:895045/140‑1 (MQ=255)

                                                 aCCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCaa                                                                                       <  1:1467554/140‑1 (MQ=255)

                                                   cATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAAcc                                                                                     >  2:2139626/1‑140 (MQ=255)

                                                    aTGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTc                                                                                               >  1:916387/1‑129 (MQ=255)

                                                    aTGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAAccc                                                                                    >  1:1522216/1‑140 (MQ=255)

                                                      gCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTg                                                                                  >  2:1321596/1‑140 (MQ=255)

                                                      gCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTg                                                                                  <  1:2374709/140‑1 (MQ=255)

                                                      gCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTg                                                                                  <  1:2315683/140‑1 (MQ=255)

                                                      gCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTg                                                                                  <  1:819012/140‑1 (MQ=255)

                                                           aCCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAAccc                                                                                    <  1:1068659/133‑1 (MQ=255)

                                                           aCCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAAccc                                                                                    >  2:1068659/1‑133 (MQ=255)

                                                           aCCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCtt                                                                             >  1:2101670/1‑140 (MQ=255)

                                                           aCCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCtt                                                                             <  1:1014591/140‑1 (MQ=255)

                                                           aCCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCtt                                                                             >  1:2282060/1‑140 (MQ=255)

                                                            ccTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTc                                                                            >  2:1621394/1‑140 (MQ=255)

                                                               ggATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAgg                                                                         <  2:1888015/140‑1 (MQ=255)

                                                                gATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTg                                                                                  <  2:457851/130‑1 (MQ=255)

                                                                gATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAggg                                                                        >  1:862028/1‑140 (MQ=255)

                                                                gATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAggg                                                                        <  2:364379/140‑1 (MQ=255)

                                                                gATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAggg                                                                        >  2:563623/1‑140 (MQ=255)

                                                                 atatCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAgggg                                                                       <  1:328107/140‑1 (MQ=255)

                                                                      aCTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGACCAGTAATTCGACATCAACCCTGCCCTTCAggggtgggg                                                                  >  1:1210980/1‑140 (MQ=255)

                                                                          aTACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAggggtggggt                                                                 >  1:1645625/1‑137 (MQ=255)

                                                                          aTACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTAc                                                              <  2:2220217/140‑1 (MQ=255)

                                                                          aTACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTAc                                                              >  2:1953265/1‑140 (MQ=255)

                                                                          aTACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTAc                                                              <  1:416166/140‑1 (MQ=255)

                                                                          aTACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTAc                                                              >  2:1741230/1‑140 (MQ=255)

                                                                          aTACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTAc                                                              >  1:2054718/1‑140 (MQ=255)

                                                                          aTACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTAc                                                              <  1:1321596/140‑1 (MQ=255)

                                                                          aTACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTAc                                                              >  1:373835/1‑140 (MQ=255)

                                                                          aTACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTAc                                                              <  1:1909868/140‑1 (MQ=255)

                                                                            aCCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCt                                                            <  2:2101475/140‑1 (MQ=255)

                                                                               cgcgAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGc                                                         >  2:1980594/1‑140 (MQ=255)

                                                                               cgcgAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGc                                                         >  2:1231560/1‑140 (MQ=255)

                                                                                gcgAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCt                                                        >  2:374408/1‑140 (MQ=255)

                                                                                gcgAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCt                                                        >  1:2348071/1‑140 (MQ=255)

                                                                                 cgAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCtt                                                       >  1:2252201/1‑140 (MQ=255)

                                                                                 cgAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCtt                                                       >  2:756495/1‑140 (MQ=255)

                                                                                 cgAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCtt                                                       <  1:2139626/140‑1 (MQ=255)

                                                                                  gagaAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTAc                                                              >  2:1450223/1‑132 (MQ=255)

                                                                                  gagaAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTAc                                                              <  1:1450223/132‑1 (MQ=255)

                                                                                      aaCTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTAcc                                                             <  1:829881/129‑1 (MQ=255)

                                                                                      aaCTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTAcc                                                             >  2:829881/1‑129 (MQ=255)

                                                                                      aaCTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCTTATCct                                                  <  2:1547281/140‑1 (MQ=255)

                                                                                            tCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCTTATCCTCTGTaa                                            <  1:2095378/140‑1 (MQ=255)

                                                                                               gTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCTTATCCTCTGTAAACt                                         >  2:1559316/1‑140 (MQ=255)

                                                                                                   tGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCTTATCCTCTGTAAACTCCtt                                     >  2:809109/1‑140 (MQ=255)

                                                                                                      cAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCTTATCCTCTGTAAACTCCTTTCt                                  <  2:1401502/140‑1 (MQ=255)

                                                                                                              gCCTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCTTATCCTCTGTAAACTCCTTTCTGAGCATca                          >  2:780970/1‑140 (MQ=255)

                                                                                                               ccTGCTTTCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCTTATCCTCTGTAAACTCCTTTCTGAGCATcac                         >  1:369959/1‑140 (MQ=255)

                                                                                                                    tttCCTCCTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCTTATCCTCTGTAAACTCCTTTCTGAGCATCACATAAt                    <  1:954729/140‑1 (MQ=255)

                                                                                                                      tcctccTCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCTTATCCTCTGTAAACTCCTTTCTGAGCATCACATAATCg                  >  2:1851030/1‑140 (MQ=255)

                                                                                                                       cctcctCTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCTTATCCTCTGTAAACTCCTTTCTGAGCATCACATAATCGa                 <  1:809109/140‑1 (MQ=255)

                                                                                                                         tcctcTGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCTTATCCTCTGTAAACTCCTTTCTGAGCATCACATAATCGaaa               <  2:974803/140‑1 (MQ=255)

                                                                                                                             ctGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCTTATCCTCTGTAAACTCCTTTCTGAGCATCACATAATCGa                 >  1:2172412/1‑134 (MQ=255)

                                                                                                                             ctGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCTTATCCTCTGTAAACTCCTTTCTGAGCATCACATAATCGa                 <  2:2172412/134‑1 (MQ=255)

                                                                                                                              tGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCTTATCCTCTGTAAACTCCTTTCTGAGCATCACATAATCGAAAAcatc          >  2:13284/1‑140 (MQ=255)

                                                                                                                              tGCCGCTTCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCTTATCCTCTGTAAACTCCTTTCTGAGCATCACATAATCGAAAAcatc          <  2:559188/140‑1 (MQ=255)

                                                                                                                                     tCAGACGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCTTATCCTCTGTAAACTCCTTTCTGAGCATCACATAATCGAAAACATCATGGttt   >  2:1495097/1‑140 (MQ=255)

GGAAAAAGGCGACTCGGTGTTCTCGCCAGATGATCGTATTGGTCAATTGACCATGCGTAACCTGGATATCACTGATACCCGCGAGAAACTTTTCGGTTATGCCAAAACTGGCCTGCTTTCCTCCTCTGCCGCTTCAGGCGTGCCGCAGGTGGAGAATCTGGAAAACAAAGGCCAGTAATTCGACATCAACCCTGCCCTTCAGGGGTGGGGTTACCTTGCTTATCCTCTGTAAACTCCTTTCTGAGCATCACATAATCGAAAACATCATGGTTTG  >  NC_000913/3319803‑3320076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A