Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F28 I1 R1 227 52.0 1764248 99.3% 1751898 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,321,189 A→G V142A (GTG→GCG)  yhbX ← putative hydrolase, inner membrane

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,321,1890AG100.0% 276.6 / NA 77V142A (GTG→GCG) yhbXputative hydrolase, inner membrane
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (40/37);  total (40/37)

CGTATAGGTAGCAAATCGCGACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCACTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGATCACTCTGGAG  >  NC_000913/3321059‑3321322
                                                                                                                                  |                                                                                                                                     
cGTATAGGTAGCAAATCGCGACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTg                                                                                                                              <  2:772819/140‑1 (MQ=255)
        tAGCAAATCGCGACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAg                                                                                                                      >  1:674913/1‑140 (MQ=255)
          gCAAATCGCGACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGa                                                                                                                    >  1:17615/1‑140 (MQ=255)
          gCAAATCGCGACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGa                                                                                                                    <  2:570509/140‑1 (MQ=255)
             aaTCGCGACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAAc                                                                                                                 <  2:657720/140‑1 (MQ=255)
               tCGCGACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAAcat                                                                                                               <  1:615421/140‑1 (MQ=255)
                cgcgACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAAcatc                                                                                                              <  1:556896/140‑1 (MQ=255)
                 gcgACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAAcatca                                                                                                             >  2:197617/1‑140 (MQ=255)
                        tAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTtta                                                                                                      <  2:17615/140‑1 (MQ=255)
                        gacagtatatGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTtta                                                                                                      <  1:80171/135‑1 (MQ=255)
                               tatGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTAc                                                                                               >  1:147118/1‑140 (MQ=255)
                                 tGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTg                                                                                             >  2:447234/1‑140 (MQ=255)
                                  ggACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGc                                                                                            >  1:660405/1‑140 (MQ=255)
                                    aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCa                                                                                          >  1:37748/1‑140 (MQ=255)
                                    aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCa                                                                                          >  2:49741/1‑140 (MQ=255)
                                    aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCa                                                                                          >  1:238438/1‑140 (MQ=255)
                                    aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCa                                                                                          >  2:458337/1‑140 (MQ=255)
                                    aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCa                                                                                          >  2:584098/1‑140 (MQ=255)
                                    aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCa                                                                                          >  1:503489/1‑140 (MQ=255)
                                    aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCa                                                                                          >  1:201392/1‑140 (MQ=255)
                                    aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCa                                                                                          >  1:194481/1‑140 (MQ=255)
                                    aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCa                                                                                          >  1:842824/1‑140 (MQ=255)
                                     cTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaa                                                                                         >  2:485901/1‑140 (MQ=255)
                                     cTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaa                                                                                         >  2:336210/1‑140 (MQ=255)
                                     cTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaa                                                                                         >  2:203716/1‑140 (MQ=255)
                                       gAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGTAAACATCATAtt                                                                                                         <  2:813708/122‑1 (MQ=255)
                                       gAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGTAAACATCATAtt                                                                                                         >  1:813708/1‑122 (MQ=255)
                                       gAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaaaa                                                                                       >  1:408397/1‑140 (MQ=255)
                                       gAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaaaa                                                                                       >  1:14113/1‑140 (MQ=255)
                                        aaCGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaaaaa                                                                                      >  2:669726/1‑140 (MQ=255)
                                        aaCGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaaaaa                                                                                      >  1:66174/1‑140 (MQ=255)
                                        aaCGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaaaaa                                                                                      >  2:77447/1‑140 (MQ=255)
                                           gCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAaag                                                                                   <  2:147118/140‑1 (MQ=255)
                                            cTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAaaga                                                                                  <  1:49741/140‑1 (MQ=255)
                                                  tATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGAt                                                                            >  1:141433/1‑140 (MQ=255)
                                                         tGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAg                                                                     >  1:37871/1‑140 (MQ=255)
                                                              cTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAg                                                                <  1:584098/140‑1 (MQ=255)
                                                                ttATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGc                                                              <  2:201392/140‑1 (MQ=255)
                                                                  ataAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGcac                                                            <  2:408397/140‑1 (MQ=255)
                                                                   taAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGcaca                                                           <  1:590568/140‑1 (MQ=255)
                                                                   taAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGcaca                                                           <  2:842824/140‑1 (MQ=255)
                                                                        aaaTTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGcaca                                                           <  1:865224/135‑1 (MQ=255)
                                                                        aaaTTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGcaca                                                           >  2:865224/1‑135 (MQ=255)
                                                                        aaaTTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGAt                                                      <  2:12931/140‑1 (MQ=255)
                                                                        aaaTTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGAt                                                      >  1:732461/1‑140 (MQ=255)
                                                                          aTTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATaa                                                    >  1:661631/1‑140 (MQ=255)
                                                                          aTTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATaa                                                    <  2:728402/140‑1 (MQ=255)
                                                                          aTTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATaa                                                    >  1:840713/1‑140 (MQ=255)
                                                                            tGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAgg                                                  <  2:840713/140‑1 (MQ=255)
                                                                            tGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAgg                                                  <  2:37871/140‑1 (MQ=255)
                                                                            tGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAgg                                                  <  2:840497/140‑1 (MQ=255)
                                                                                   cGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATAc                                           <  2:637131/140‑1 (MQ=255)
                                                                                         aTAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATcccc                                     <  1:674991/140‑1 (MQ=255)
                                                                                                gCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCAttt                              >  1:213823/1‑140 (MQ=255)
                                                                                                gCCCGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACACCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCAttt                              >  2:129186/1‑140 (MQ=255)
                                                                                                   cGAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGa                           <  2:732461/140‑1 (MQ=255)
                                                                                                    gAAATGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGAc                          >  1:416836/1‑140 (MQ=255)
                                                                                                       aTGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAAc                       <  2:194481/140‑1 (MQ=255)
                                                                                                        tGACAATCAGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACt                      <  2:661631/140‑1 (MQ=255)
                                                                                                            aaTCAGCAATAATATTTCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCAt                  <  2:635312/140‑1 (MQ=255)
                                                                                                                aGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCgg              >  1:173972/1‑140 (MQ=255)
                                                                                                                aGCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCgg              >  2:94163/1‑140 (MQ=255)
                                                                                                                 gCAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGa             <  2:66174/140‑1 (MQ=255)
                                                                                                                  cAATAATATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGAt            <  2:37748/140‑1 (MQ=255)
                                                                                                                   aataatATTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGATc           >  1:683200/1‑140 (MQ=255)
                                                                                                                      aataTTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGATCAct        <  2:714011/140‑1 (MQ=255)
                                                                                                                      aataTTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGATCAct        <  1:209244/140‑1 (MQ=255)
                                                                                                                       atatTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGATCActc       <  2:416836/140‑1 (MQ=255)
                                                                                                                       atatTCCTGTCGCTTTTTTTGTCGGCAAGGAAACACCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGATCActc       <  1:129186/140‑1 (MQ=255)
                                                                                                                        tatTCCTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGATCActct      <  1:94163/140‑1 (MQ=255)
                                                                                                                            ccTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGa             <  1:566041/129‑1 (MQ=255)
                                                                                                                            ccTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGa             >  2:566041/1‑129 (MQ=255)
                                                                                                                            ccTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGATCAct        <  1:311891/134‑1 (MQ=255)
                                                                                                                            ccTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGATCAct        >  2:311891/1‑134 (MQ=255)
                                                                                                                            ccTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGATCACTCTGGAg  <  2:503489/140‑1 (MQ=255)
                                                                                                                            ccTGTCGCTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGATCACTCTGGAg  >  2:452523/1‑140 (MQ=255)
                                                                                                                            ccTGTCGCTTTTTTTGTCGACAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGATCACTCTGGAg  >  1:497445/1‑140 (MQ=255)
                                                                                                                                  |                                                                                                                                     
CGTATAGGTAGCAAATCGCGACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCACTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGATCACTCTGGAG  >  NC_000913/3321059‑3321322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A