Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,321,197 (T)7→6 coding (417/1626 nt) yhbX ← putative hydrolase, inner membrane

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,321,1910T.100.0% 383.0 / NA 88coding (423/1626 nt)yhbXputative hydrolase, inner membrane
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (48/40);  total (48/40)

GCGTATAGGTAGCAAATCGCGACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCACTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGATCACTCTGGAGC  >  NC_000913/3321058‑3321323
                                                                                                                                     |                                                                                                                                    
gCGTATAGGTAGCAAATCGCGACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCACttttttg                                                                                                                                <  1:445574/140‑2 (MQ=255)
 cGTATAGGTAGCAAATCGCGACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCACttttttgt                                                                                                                               >  1:233856/1‑138 (MQ=255)
  gTATAGGTAGCAAATCGCGACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCACttttttgtc                                                                                                                              <  1:1032319/140‑4 (MQ=255)
     taGGTAGCAAATCGCGACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGc                                                                                                                          <  1:979197/140‑1 (MQ=255)
         tAGCAAATCGCGACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAgg                                                                                                                      <  2:413681/140‑1 (MQ=255)
           gCAAATCGCGACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCaa                                                                                                                        >  1:955439/1‑136 (MQ=255)
           gCAAATCGCGACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCaa                                                                                                                        <  2:955439/136‑1 (MQ=255)
              aaTCGCGACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAAca                                                                                                                 <  1:1044962/140‑1 (MQ=255)
              aaTCGCGACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAAca                                                                                                                 <  2:233856/140‑1 (MQ=255)
                tCGCGACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAAcatc                                                                                                               <  2:263813/140‑1 (MQ=255)
                           gTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTttatta                                                                                                    >  2:772417/1‑140 (MQ=255)
                                   ggACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAAcatcat                                                                                                             >  2:394029/1‑123 (MQ=255)
                                   ggACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAAcatcat                                                                                                             <  1:394029/123‑1 (MQ=255)
                                   ggACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGcc                                                                                            >  2:1106669/1‑140 (MQ=255)
                                   ggACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGcc                                                                                            >  2:470983/1‑140 (MQ=255)
                                   ggACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGcc                                                                                            >  1:368379/1‑140 (MQ=255)
                                     aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGcc                                                                                            <  2:213820/138‑1 (MQ=255)
                                     aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGcc                                                                                            >  1:213820/1‑138 (MQ=255)
                                     aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaa                                                                                          >  1:634779/1‑140 (MQ=255)
                                     aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaa                                                                                          >  1:550952/1‑140 (MQ=255)
                                     aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaa                                                                                          >  2:324432/1‑140 (MQ=255)
                                     aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaa                                                                                          >  1:1181259/1‑140 (MQ=255)
                                     aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaa                                                                                          >  1:871995/1‑140 (MQ=255)
                                     aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaa                                                                                          >  1:928104/1‑140 (MQ=255)
                                     aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaa                                                                                          >  2:337233/1‑140 (MQ=255)
                                     aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaa                                                                                          >  1:1159447/1‑140 (MQ=255)
                                     aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaa                                                                                          >  1:363974/1‑140 (MQ=255)
                                     aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaa                                                                                          >  2:902065/1‑140 (MQ=255)
                                     aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaa                                                                                          >  1:31621/1‑140 (MQ=255)
                                     aCTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaa                                                                                          >  2:383663/1‑140 (MQ=255)
                                      cTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaaa                                                                                         >  1:1035577/1‑140 (MQ=255)
                                      cTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaaa                                                                                         >  2:654241/1‑140 (MQ=255)
                                      cTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaaa                                                                                         >  1:536614/1‑140 (MQ=255)
                                      cTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaaa                                                                                         >  2:56643/1‑140 (MQ=255)
                                        gAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaaaaa                                                                                       >  1:258362/1‑140 (MQ=255)
                                        gAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaaaaa                                                                                       >  2:746926/1‑140 (MQ=255)
                                        gAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaaaaa                                                                                       >  2:627419/1‑140 (MQ=255)
                                        gAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaaaaa                                                                                       >  2:1235961/1‑140 (MQ=255)
                                        gAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaaaaa                                                                                       >  1:343882/1‑140 (MQ=255)
                                         aaCGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaaaaaa                                                                                      >  2:145931/1‑140 (MQ=255)
                                         aaCGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaaaaaa                                                                                      >  2:238278/1‑140 (MQ=255)
                                         aaCGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaaaaaa                                                                                      >  1:507734/1‑140 (MQ=255)
                                          aCGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaaaaaaa                                                                                     >  1:49646/1‑140 (MQ=255)
                                          aCGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCaaaaaaa                                                                                     >  1:489457/1‑140 (MQ=255)
                                            gCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAaaga                                                                                   <  2:1181259/140‑1 (MQ=255)
                                                        tttGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATaaaaaa                                                                       >  2:471922/1‑140 (MQ=255)
                                                        tttGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATaaaaaa                                                                       >  1:929222/1‑140 (MQ=255)
                                                        tttGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATaaaaaa                                                                       >  1:800572/1‑140 (MQ=255)
                                                           gCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCa                                                                    <  2:10274/140‑1 (MQ=255)
                                                           gCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCa                                                                    <  1:324432/140‑1 (MQ=255)
                                                           gCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCa                                                                    <  2:270438/140‑1 (MQ=255)
                                                            cATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCaa                                                                   <  1:467787/140‑1 (MQ=255)
                                                             aTCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGGAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCaaa                                                                  <  2:537006/140‑1 (MQ=255)
                                                               cTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAgg                                                                <  1:627419/140‑1 (MQ=255)
                                                                 ttATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGca                                                              <  2:550952/140‑1 (MQ=255)
                                                                  tataAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGcac                                                             <  2:97168/140‑1 (MQ=255)
                                                                  tataAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGcac                                                             <  1:238278/140‑1 (MQ=255)
                                                                  tataAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGcac                                                             <  1:768365/140‑1 (MQ=255)
                                                                  tataAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGcac                                                             >  2:1226835/1‑140 (MQ=255)
                                                                   ataAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGcaca                                                            <  2:49646/140‑1 (MQ=255)
                                                                   ataAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGcaca                                                            <  2:489457/140‑1 (MQ=255)
                                                                   ataAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGcaca                                                            <  2:507915/140‑1 (MQ=255)
                                                                   ataAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGcaca                                                            <  1:471922/140‑1 (MQ=255)
                                                                    taAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACAt                                                           <  2:871995/140‑1 (MQ=255)
                                                                        cAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGAt                                                       <  2:368379/140‑1 (MQ=255)
                                                                        cAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGAt                                                       <  1:470983/140‑1 (MQ=255)
                                                                         aaaTTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATa                                                      <  1:445820/140‑1 (MQ=255)
                                                                           aTTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAg                                                    >  2:350680/1‑140 (MQ=255)
                                                                           aTTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAg                                                    >  1:373586/1‑140 (MQ=255)
                                                                           aTTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAg                                                    <  1:350680/140‑1 (MQ=255)
                                                                            ttGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAgg                                                   >  1:792199/1‑140 (MQ=255)
                                                                               aCAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGca                                                              >  2:663936/1‑126 (MQ=255)
                                                                               aCAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGca                                                              <  1:663936/126‑1 (MQ=255)
                                                                                   gCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGAt                                                       >  1:819277/1‑129 (MQ=255)
                                                                                   gCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGAt                                                       <  2:819277/129‑1 (MQ=255)
                                                                                     ggAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACAt                                          >  1:1223677/1‑140 (MQ=255)
                                                                                      gAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATc                                         <  2:221879/140‑1 (MQ=255)
                                                                                                 gCCCGAAATGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCAtttt                              >  2:837322/1‑140 (MQ=255)
                                                                                                       aaTGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAAc                        >  1:179103/1‑140 (MQ=255)
                                                                                                        aTGACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACt                       <  1:547775/140‑1 (MQ=255)
                                                                                                          gACAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTc                     <  2:309827/140‑1 (MQ=255)
                                                                                                            cAATCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTAATACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCAt                   >  1:1165252/1‑140 (MQ=255)
                                                                                                               tCAGCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCg                <  1:1235961/140‑1 (MQ=255)
                                                                                                                  gCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGAt             <  1:772417/140‑1 (MQ=255)
                                                                                                                  gCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGAt             <  2:536614/140‑1 (MQ=255)
                                                                                                                  gCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGAt             <  2:373586/140‑1 (MQ=255)
                                                                                                                  gCAATAATATTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGAt             <  2:350864/140‑1 (MQ=255)
                                                                                                                      taataTTCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGATCAct         <  2:1159447/140‑1 (MQ=255)
                                                                                                                           ttCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGATCACTCTGGa    >  1:1049251/1‑140 (MQ=255)
                                                                                                                            tCCTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGATCACTCTGGAg   <  1:16411/140‑1 (MQ=255)
                                                                                                                             ccTGTCAC‑TTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGATCACTCTGGAGc  >  1:71747/1‑140 (MQ=255)
                                                                                                                                     |                                                                                                                                    
GCGTATAGGTAGCAAATCGCGACGCTAGTATATATGGACTGAACGCTTTTTTATTTTTTGCATCTTTATAAGCAAATTGACAAGCGGAAAATAAACTGCCCGAAATGACAATCAGCAATAATATTCCTGTCACTTTTTTTGTCGGCAAGGAAACATCATATTTTATTATTACTGCCAAAAAAAGAAGGGATAAAAAAGCAAAGGCACATAGATAAGGGATATACATCCCCAGCATTTTGACAACTTCATCCGGATCACTCTGGAGC  >  NC_000913/3321058‑3321323

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A