Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,361,696	A→G	H174R (CAC→CGC)	gltF →	periplasmic protein GltF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,361,696	0	A	G	100.0%	741.2 / NA	203	H174R (CAC→CGC)	gltF	periplasmic protein GltF
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (102/101); total (102/101)

Only 100 of 204 total aligned reads displayed.

CGCCTTTGGTTTAGGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAGGGGAACTGACACCTGTTGCTATTACAGCGGTC  >  NC_000913/3361562‑3361832

cGCCTTTGGTTTAGGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGt                                                                                                                                     <  2:825694/140‑1 (MQ=255)

     ttGGTTTAGGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTcagca                                                                                                                                <  2:2355692/140‑1 (MQ=255)

       ggTTTAGGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCagcagc                                                                                                                              <  1:252492/140‑1 (MQ=255)

       ggTTTAGGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCagcagc                                                                                                                              <  2:1569241/140‑1 (MQ=255)

        gTTTAGGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCg                                                                                                                             <  2:622159/140‑1 (MQ=255)

            aGGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGAccc                                                                                                                         <  2:1331136/140‑1 (MQ=255)

              gTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGAccccc                                                                                                                       <  1:1168614/140‑1 (MQ=255)

               ttCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCca                                                                                                                      <  2:893276/140‑1 (MQ=255)

                  tGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACAt                                                                                                                   >  2:920337/1‑140 (MQ=255)

                  tGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACAt                                                                                                                   >  1:635703/1‑140 (MQ=255)

                  tGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACAt                                                                                                                   >  2:329313/1‑140 (MQ=255)

                  tGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACAt                                                                                                                   >  2:441677/1‑140 (MQ=255)

                   gcgcCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGAccc                                                                                                                         >  2:287191/1‑133 (MQ=255)

                   gcgcCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGAccc                                                                                                                         <  1:287191/133‑1 (MQ=255)

                    cgcCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATgg                                                                                                                 <  2:2246701/140‑1 (MQ=255)

                     gcCTAATGGACAGAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGa                                                                                                                <  1:1500714/140‑1 (MQ=255)

                     gcCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGa                                                                                                                <  2:660178/140‑1 (MQ=255)

                       cTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGaaa                                                                                                              <  1:511178/140‑1 (MQ=255)

                        tAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCca                                                                                                                      <  1:2229690/131‑1 (MQ=255)

                        tAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAg                                                                                                             <  1:1085972/140‑1 (MQ=255)

                         aaTGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGc                                                                                                            >  1:461784/1‑140 (MQ=255)

                         aaTGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGc                                                                                                            >  1:1065560/1‑140 (MQ=255)

                          aTGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGcc                                                                                                           <  1:2321888/140‑1 (MQ=255)

                          aTGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGcc                                                                                                           <  1:793037/140‑1 (MQ=255)

                           tGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCt                                                                                                          <  1:1152522/140‑1 (MQ=255)

                              aCAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCAt                                                                                                       <  2:2295068/140‑1 (MQ=255)

                                aaaaaaTTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGa                                                                                                                >  1:539995/1‑129 (MQ=255)

                                aaaaaaTTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGa                                                                                                                <  2:539995/129‑1 (MQ=255)

                                 aaaaaTTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGTGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTa                                                                                                    <  2:2015458/140‑1 (MQ=255)

                                        ggCGCTGCATCTATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGATATTCCTGTCGACCTGATTCAAACTGACTGCTGGTCAGGAGCGACCCCCACATGGAAAGCCTCATCTAATGgcgc                                                                                             >  2:2153957/1‑140 (MQ=255)

                                        ggCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGgcgc                                                                                             >  2:106217/1‑140 (MQ=255)

                                          cgcTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCAt                                                                                           >  2:1109499/1‑140 (MQ=255)

                                               cATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGc                                                                                      <  2:1700056/140‑1 (MQ=255)

                                               cATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGc                                                                                      <  2:1876538/140‑1 (MQ=255)

                                                     ttGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGGTACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTg                                                                                <  1:1706271/140‑1 (MQ=255)

                                                       ggTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGAc                                                                              <  1:933366/140‑1 (MQ=255)

                                                         tATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACaa                                                                            >  2:1545493/1‑140 (MQ=255)

                                                         tATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACaa                                                                            >  1:1174484/1‑140 (MQ=255)

                                                         tATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACaa                                                                            >  2:853266/1‑140 (MQ=255)

                                                         tATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACaa                                                                            >  1:1005936/1‑140 (MQ=255)

                                                          aTTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAg                                                                           <  2:142908/140‑1 (MQ=255)

                                                           ttGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCa                                                                                            <  1:887088/122‑1 (MQ=255)

                                                            tGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGtt                                                                         <  1:1473975/140‑1 (MQ=255)

                                                                 ggTCTAATGGTGGGATTCACGCGGCGGACGATAC‑GGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAg                                                                   >  1:869717/1‑140 (MQ=255)

                                                                  gTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACa                                                                             <  1:1915458/130‑1 (MQ=255)

                                                                  gTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAg                                                                   >  2:2004009/1‑140 (MQ=255)

                                                                  gTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAg                                                                   >  2:1486945/1‑140 (MQ=255)

                                                                  gTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAg                                                                   >  1:630308/1‑140 (MQ=255)

                                                                   tCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGc                                                                  >  2:1905881/1‑140 (MQ=255)

                                                                   tCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGc                                                                  >  2:1320951/1‑140 (MQ=255)

                                                                     tAATGGTGGGATTCACACGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCaa                                                                >  2:1399879/1‑140 (MQ=255)

                                                                       aTGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGATCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATc                                                              >  1:412973/1‑140 (MQ=255)

                                                                          gtggGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAg                                                           <  2:635703/140‑1 (MQ=255)

                                                                          gtggGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAg                                                           >  1:2276948/1‑140 (MQ=255)

                                                                          gtggGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAg                                                           <  1:1495888/140‑1 (MQ=255)

                                                                          gtggGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAg                                                           <  1:2361214/140‑1 (MQ=255)

                                                                          gtggGATTCACGCGGCGGACGATACAGGTGAAATTACTGTCGACTTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAg                                                           <  2:1660635/140‑1 (MQ=255)

                                                                            gggATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAgcg                                                         >  1:192715/1‑140 (MQ=255)

                                                                            gggATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAgcg                                                         >  1:231069/1‑140 (MQ=255)

                                                                            gggATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAgcg                                                         <  2:1509229/140‑1 (MQ=255)

                                                                             ggATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAgcgc                                                        >  1:841986/1‑140 (MQ=255)

                                                                             ggATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAgcgc                                                        <  2:676760/140‑1 (MQ=255)

                                                                             ggATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAgcgc                                                        >  2:2411030/1‑140 (MQ=255)

                                                                             ggATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAgcgc                                                        >  1:1592306/1‑140 (MQ=255)

                                                                             ggATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAgcgc                                                        >  2:109630/1‑140 (MQ=255)

                                                                             ggATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAgcgc                                                        >  2:1467708/1‑140 (MQ=255)

                                                                             ggATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAgcgc                                                        >  2:2059531/1‑140 (MQ=255)

                                                                             ggATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAg                                                           <  1:12861/137‑1 (MQ=255)

                                                                             ggATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAg                                                           >  2:12861/1‑137 (MQ=255)

                                                                               aTTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCgg                                                      <  1:1098710/140‑1 (MQ=255)

                                                                                 tCACGCGGCGGACGATACAGGTGAAATTCCTGTCCACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGtt                                                    >  2:2135165/1‑140 (MQ=255)

                                                                                    cgcgGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTAtt                                                 >  1:577264/1‑140 (MQ=255)

                                                                                      cggcggACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCt                                               <  1:1517265/140‑1 (MQ=255)

                                                                                      cggcggACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCt                                               <  1:1545493/140‑1 (MQ=255)

                                                                                         cggACGATACAGGTGAAAGTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGtt                                            >  2:1801399/1‑140 (MQ=255)

                                                                                           gACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGc                                          <  2:1753728/140‑1 (MQ=255)

                                                                                           gACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGc                                          <  2:585211/140‑1 (MQ=255)

                                                                                                tACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCaaaaa                                     <  2:1592306/140‑1 (MQ=255)

                                                                                                   aGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAg                                  <  1:329313/140‑1 (MQ=255)

                                                                                                   aGGTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAg                                  <  1:441677/140‑1 (MQ=255)

                                                                                                    ggTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAgg                                 <  1:1634973/140‑1 (MQ=255)

                                                                                                     gTGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAggg                                <  1:1685283/140‑1 (MQ=255)

                                                                                                          aTTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAGGGGAACt                           >  1:384133/1‑140 (MQ=255)

                                                                                                          aTTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAGGGGAACt                           >  1:2130568/1‑140 (MQ=255)

                                                                                                          aTTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAGGGGAACt                           >  1:989800/1‑140 (MQ=255)

                                                                                                               tGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAGGGGAACTGacac                      >  1:2041655/1‑140 (MQ=255)

                                                                                                               tGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAGGGGAACTGacac                      >  1:716754/1‑140 (MQ=255)

                                                                                                               tGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAGGGGAACTGacac                      >  1:685761/1‑140 (MQ=255)

                                                                                                               tGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAGGGGAACTGacac                      >  2:1168049/1‑140 (MQ=255)

                                                                                                               tGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAGGGGAACTGacac                      >  1:1615514/1‑140 (MQ=255)

                                                                                                                 tCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAGGGGAACTGACACCt                    <  2:451526/140‑1 (MQ=255)

                                                                                                                 tCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAGGGGAACTGACACCt                    <  2:1719817/140‑1 (MQ=255)

                                                                                                                  cGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAGGGGAACTGACACCTg                   <  1:1801399/140‑1 (MQ=255)

                                                                                                                             aaaCTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAGGGGAACTGACACCTGTTGCTATTACa        <  1:1109499/140‑1 (MQ=255)

                                                                                                                              aaCTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAGGGGAACTGa                         <  2:740578/122‑1 (MQ=255)

                                                                                                                               aCTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAGGGGAACTGACACCTGt                  <  2:1625977/128‑1 (MQ=255)

                                                                                                                                cTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAGGGGAACTGACACCTGTTGCTATTACAGCg     <  2:344933/140‑1 (MQ=255)

                                                                                                                                 tGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAGGGGAACTGACACCTGTTGCTATTACAGCgg    <  2:1918738/140‑1 (MQ=255)

                                                                                                                                   aCCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAGGGGAACTGACACCTGTTGCTATTACAGCGGTc  <  1:1399879/140‑1 (MQ=255)

                                                                                                                                   aCCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAGGGGAACTGACACCTGTTGCTATTACAGCGGTc  >  1:1722265/1‑140 (MQ=255)

CGCCTTTGGTTTAGGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACAAGTTGCTCAGCAATCGAGCGCGGTTATTCTGTTGCAAAAACAGGGGAACTGACACCTGTTGCTATTACAGCGGTC  >  NC_000913/3361562‑3361832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A