Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,448,477	T→C	H31R (CAC→CGC)	rpsQ ←	30S ribosomal subunit protein S17

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,448,477	0	T	C	100.0%	514.8 / NA	142	H31R (CAC→CGC)	rpsQ	30S ribosomal subunit protein S17
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (72/70); total (72/70)

Only 100 of 145 total aligned reads displayed.

GAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTAAAGTCTTAACGCGTGCG  >  NC_000913/3448340‑3448610

gAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGgcgt                                                                                                                                     >  2:1889209/1‑140 (MQ=255)

  aCCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGttt                                                                                                                                   >  1:466454/1‑140 (MQ=255)

  aCCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGttt                                                                                                                                   >  1:72706/1‑140 (MQ=255)

      gCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGTCGTTTcaca                                                                                                                               <  1:1998411/140‑1 (MQ=255)

       cGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACaa                                                                                                                              >  2:1705801/1‑140 (MQ=255)

                 ttAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGAt                                                                                                                    <  2:128213/140‑1 (MQ=255)

                   aGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAg                                                                                                                  >  1:342162/1‑140 (MQ=255)

                   aGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAg                                                                                                                  >  1:1142420/1‑140 (MQ=255)

                   aGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAg                                                                                                                  >  1:919890/1‑140 (MQ=255)

                   aGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAg                                                                                                                  >  1:1357380/1‑140 (MQ=255)

                    gTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGc                                                                                                                 <  1:1705801/140‑1 (MQ=255)

                      cTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGcaa                                                                                                               <  2:579515/140‑1 (MQ=255)

                      cTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGcaa                                                                                                               <  2:1585957/140‑1 (MQ=255)

                       ttGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGcaac                                                                                                              <  2:370953/140‑1 (MQ=255)

                       ttGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGcaac                                                                                                              <  1:2247424/140‑1 (MQ=255)

                        tGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGcaaca                                                                                                             >  2:1554193/1‑140 (MQ=255)

                        tGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGcaaca                                                                                                             >  1:2265344/1‑140 (MQ=255)

                        tGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGcaaca                                                                                                             >  1:214299/1‑140 (MQ=255)

                        tGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGcaaca                                                                                                             >  1:867305/1‑140 (MQ=255)

                        tGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGCTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGcaaca                                                                                                             >  2:2201765/1‑140 (MQ=255)

                         ggACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGcaacaa                                                                                                            >  1:876189/1‑140 (MQ=255)

                          gACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGcaacaac                                                                                                           >  2:1430386/1‑140 (MQ=255)

                            cAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGcaacaacaa                                                                                                         <  1:387796/140‑1 (MQ=255)

                            cAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGcaacaacaa                                                                                                         <  2:84866/140‑1 (MQ=255)

                              gCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATg                                                                                                       <  1:48121/140‑1 (MQ=255)

                              gCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATg                                                                                                       <  2:342162/140‑1 (MQ=255)

                               cGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGAt                                                                                                                    >  2:354893/1‑126 (MQ=255)

                               cGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGcaac                                                                                                              >  1:2049491/1‑132 (MQ=255)

                               cGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGcaac                                                                                                              <  2:2049491/132‑1 (MQ=255)

                               cGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGc                                                                                                                 <  1:1412061/129‑1 (MQ=255)

                               cGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATgg                                                                                                      >  2:2369097/1‑140 (MQ=255)

                                   cGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGAttt                                                                                                  <  2:214299/140‑1 (MQ=255)

                                    ggCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTtc                                                                                                 >  2:505961/1‑140 (MQ=255)

                                     gCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTtct                                                                                                >  1:1163384/1‑140 (MQ=255)

                                          cgcgGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCAtt                                                                                           <  2:1920506/140‑1 (MQ=255)

                                            cgGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCAtttt                                                                                         <  2:156956/140‑1 (MQ=255)

                                              gATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGt                                                                                       <  1:1617588/140‑1 (MQ=255)

                                                 ttCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGc                                                                                    <  1:1444510/140‑1 (MQ=255)

                                                  tCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCt                                                                                   <  2:1217530/140‑1 (MQ=255)

                                                    aaCCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTaa                                                                                 <  1:1642994/140‑1 (MQ=255)

                                                     aCCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTaa                                                                                 >  2:149827/1‑139 (MQ=255)

                                                         cGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAAcg                                                                            <  2:214471/140‑1 (MQ=255)

                                                         cGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAAcg                                                                            <  2:1357380/140‑1 (MQ=255)

                                                         cGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAAcg                                                                            >  2:2327240/1‑140 (MQ=255)

                                                         cGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAAcg                                                                            <  2:1868823/140‑1 (MQ=255)

                                                           tCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAAcg                                                                            >  1:1592675/1‑138 (MQ=255)

                                                           tCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAAcg                                                                            <  2:1592675/138‑1 (MQ=255)

                                                             aCCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGAc                                                                        <  1:1766641/140‑1 (MQ=255)

                                                             aCCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGAc                                                                        >  1:2275262/1‑140 (MQ=255)

                                                                 aTACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTg                                                                    <  1:440959/140‑1 (MQ=255)

                                                                 aTACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTAGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTg                                                                    <  2:1050637/140‑1 (MQ=255)

                                                                  tACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGc                                                                   <  2:2275262/140‑1 (MQ=255)

                                                                   aCCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCa                                                                  <  2:876189/140‑1 (MQ=255)

                                                                   aCCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCa                                                                  <  1:2281586/140‑1 (MQ=255)

                                                                      gCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCagag                                                               >  1:1425744/1‑140 (MQ=255)

                                                                       cATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGt                                                              >  2:1522590/1‑140 (MQ=255)

                                                                         ttCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTAc                                                            >  1:988084/1‑140 (MQ=255)

                                                                         ttCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTAc                                                            >  2:1007720/1‑140 (MQ=255)

                                                                            gttgttCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGa                                                         <  2:1142420/140‑1 (MQ=255)

                                                                            gttgttCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGa                                                         <  2:219141/140‑1 (MQ=255)

                                                                            gttgttCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGa                                                         <  2:1275726/140‑1 (MQ=255)

                                                                            gttgttCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGa                                                         >  2:1717677/1‑140 (MQ=255)

                                                                                  ctcGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTAt                                                   <  2:466454/140‑1 (MQ=255)

                                                                                     gTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCgg                                                >  2:1350766/1‑140 (MQ=255)

                                                                                     gTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCgg                                                >  1:1805959/1‑140 (MQ=255)

                                                                                          gTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATc                                                  <  2:2062322/133‑1 (MQ=255)

                                                                                          gTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATc                                                  >  1:2062322/1‑133 (MQ=255)

                                                                                          gTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCAtt                                           >  1:76945/1‑140 (MQ=255)

                                                                                             cGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACg                                        <  1:2327240/140‑1 (MQ=255)

                                                                                             cGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACg                                        <  2:1425744/140‑1 (MQ=255)

                                                                                               tGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCa                                      >  1:578482/1‑140 (MQ=255)

                                                                                                 cAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTAt                                                   >  1:2061405/1‑125 (MQ=255)

                                                                                                   gTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCg                                  >  1:1761481/1‑140 (MQ=255)

                                                                                                        gTCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAAAGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTtc                             >  2:1348386/1‑140 (MQ=255)

                                                                                                         tCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCt                               <  2:1476991/137‑1 (MQ=255)

                                                                                                         tCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCt                               >  1:1476991/1‑137 (MQ=255)

                                                                                                         tCGTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTtct                            >  1:578820/1‑140 (MQ=255)

                                                                                                           gTACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCg                          >  1:1846209/1‑140 (MQ=255)

                                                                                                            tACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGt                         >  1:262489/1‑140 (MQ=255)

                                                                                                            tACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGt                         >  1:379494/1‑140 (MQ=255)

                                                                                                            tACGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGt                         <  2:2274335/140‑1 (MQ=255)

                                                                                                             aCGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGtt                        >  2:1157717/1‑140 (MQ=255)

                                                                                                             aCGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAAAGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGtt                        <  1:1348386/140‑1 (MQ=255)

                                                                                                              cGCTTGATGAATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGtt                        >  1:1518785/1‑139 (MQ=255)

                                                                                                                  tgatgaATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTa                   <  1:2201765/140‑1 (MQ=255)

                                                                                                                  tgatgaATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTa                   <  1:2172222/140‑1 (MQ=255)

                                                                                                                   gatgaATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTaa                  >  2:610013/1‑140 (MQ=255)

                                                                                                                   gatgaATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTaa                  >  2:182681/1‑140 (MQ=255)

                                                                                                                    atgaATTTACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTaaa                 <  1:1554193/140‑1 (MQ=255)

                                                                                                                         tttACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCCCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTAAAGTCtt            >  2:927379/1‑140 (MQ=255)

                                                                                                                           tACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTAAAGTCTTaa          >  1:810070/1‑140 (MQ=255)

                                                                                                                           tACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTAAAGTCTTaa          >  1:297356/1‑140 (MQ=255)

                                                                                                                           tACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTAAAGTCTTaa          >  1:1658519/1‑140 (MQ=255)

                                                                                                                           tACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTAAAGTCTTaa          >  1:1113811/1‑140 (MQ=255)

                                                                                                                           tACCGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTAAAGTCTTaa          >  2:920193/1‑140 (MQ=255)

                                                                                                                              cGTAGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTAAAGTCTTAAcgc       >  1:679609/1‑140 (MQ=255)

                                                                                                                                 aGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTAAAGTCTTAACGCGTg    <  2:1846209/140‑1 (MQ=255)

                                                                                                                                 aGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTAAAGTCTTAACGCGTg    <  1:1017436/140‑1 (MQ=255)

                                                                                                                                 aGATCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCAGTCATTACGCACCCGCCTTCTCGTTCAGTAAAGTCTTAACGCGTg    >  1:1454182/1‑140 (MQ=255)

                                                                                                                                   aTCGGGCGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTAAAGTCTTAACGCGTGCg  >  1:1181817/1‑140 (MQ=255)

GAACCAGCGTCCAGGATTTAGTCTTGGACAGCGGACGGCATTCGCGGATTTCAACCACGTCACCGATACCGCATTCGTTGTTCTCGTCATGTACGTGCAGTTTGGTCGTACGCTTGATGAATTTACCGTAGATCGGGTGTTTCACAAAACGTTCGATAGCAACAACAATGGATTTCTCCATTTTGTCGCTAACAACGCGACCTTGCAGAGTACGGATTTTATCGGTCATTACGCACCCGCCTTCTCGTTCAGTAAAGTCTTAACGCGTGCG  >  NC_000913/3448340‑3448610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A