Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,475,447	G→A	T91M (ACG→ATG)	tusD ←	sulfurtransferase complex subunit TusD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,475,447	0	G	A	100.0%	486.1 / NA	136	T91M (ACG→ATG)	tusD	sulfurtransferase complex subunit TusD
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (61/75); total (61/75)

Only 100 of 138 total aligned reads displayed.

AAAACAAACGCAATTCGTTTCATCAGAACTGTACCACCCTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCGTTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGGAGAGGTCAATTGGTTAGCGTT  >  NC_000913/3475310‑3475583

aaaaCAAACGCAATTCGTTTCATCAGAACTGTACCACCCTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCAtt                                                                                                                                        >  1:1628396/1‑140 (MQ=255)

     aaacGCAATTCGTTTCATCAGAACTGTACCACCCTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTtcatc                                                                                                                                   >  2:1641052/1‑140 (MQ=255)

     aaacGCAATTCGTTTCATCAGAACTGTACCACCCTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTtcatc                                                                                                                                   >  1:1961124/1‑140 (MQ=255)

     aaacGCAATTCGTTTCATCAGAACTGTACCACCCTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTtcatc                                                                                                                                   >  1:219985/1‑140 (MQ=255)

     aaacGCAATTCGTTTCATCAGAACTGTACCACCCTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTtcatc                                                                                                                                   >  2:831901/1‑140 (MQ=255)

     aaacGCAATTCGTTTCATCAGAACTGTACCACCCTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTtcatc                                                                                                                                   <  2:204843/140‑1 (MQ=255)

          cAATTCGTTTCATCAGAACTGTACCACCCTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATcaacaa                                                                                                                              <  1:456504/140‑1 (MQ=255)

               cGTTTCATCAGAACTGTACCACCCTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCa                                                                                                                         <  2:1064174/140‑1 (MQ=255)

                   tcatcaGAACTGTACCACCCTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGc                                                                                                                     >  2:252509/1‑140 (MQ=255)

                   tcatcaGAACTGTACCACCCTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGc                                                                                                                     <  2:219985/140‑1 (MQ=255)

                          aaCTGTACCACCCTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAAtgc                                                                                                              <  1:1395456/140‑1 (MQ=255)

                               tACCACCCTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCg                                                                                                         <  1:2223155/140‑1 (MQ=255)

                               tACCACCCTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCg                                                                                                         <  2:184344/140‑1 (MQ=255)

                               tACCACCCTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCg                                                                                                         >  2:323938/1‑140 (MQ=255)

                               tACCACCCTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCg                                                                                                         >  1:2009473/1‑140 (MQ=255)

                                  caccCTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTa                                                                                                      <  1:1718274/140‑1 (MQ=255)

                                    cccTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACg                                                                                                    >  2:241354/1‑140 (MQ=255)

                                    cccTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACg                                                                                                    <  1:1248785/140‑1 (MQ=255)

                                    cccTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACg                                                                                                    >  1:1909996/1‑140 (MQ=255)

                                    cccTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACg                                                                                                    >  2:1248785/1‑140 (MQ=255)

                                       tGTCAGAGGCCAGCGAGGCTTCCGCCAGCGCGCCAAATCCGCTTAAGGTAAGTCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGACCTCCATTTCATCAACAACGCCACGGCCAAATGCTGCCGCTACTCAg                                                                                                 <  2:1535497/140‑1 (MQ=255)

                                       tGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACgaag                                                                                                 <  1:895779/140‑4 (MQ=255)

                                       tGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAg                                                                                                 <  2:1957158/140‑1 (MQ=255)

                                         tCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGat                                                                                               >  1:1278858/1‑140 (MQ=255)

                                            caGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATAtt                                                                                            <  2:1628396/140‑1 (MQ=255)

                                               gTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTa                                                                                                      >  1:1515691/1‑127 (MQ=255)

                                               gTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTa                                                                                                      <  2:1515691/127‑1 (MQ=255)

                                               gTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAg                                                                                         >  1:2356644/1‑140 (MQ=255)

                                               gTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAg                                                                                         <  2:1720677/140‑1 (MQ=255)

                                               gTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAg                                                                                         >  1:645351/1‑140 (MQ=255)

                                                tCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAgc                                                                                        <  1:54405/140‑1 (MQ=255)

                                                 cAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAgcg                                                                                       <  2:1500256/140‑1 (MQ=255)

                                                 cAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAgcg                                                                                       <  2:373167/140‑1 (MQ=255)

                                                 cAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAgcg                                                                                       <  1:156716/140‑1 (MQ=255)

                                                 cAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAgcg                                                                                       <  1:1000413/140‑1 (MQ=255)

                                                 cAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAgcg                                                                                       <  2:1278858/140‑1 (MQ=255)

                                                 cAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAgcg                                                                                       <  2:1116210/140‑1 (MQ=255)

                                                 cAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAgcg                                                                                       >  2:1055591/1‑140 (MQ=255)

                                                 cAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAgcg                                                                                       <  1:376840/140‑1 (MQ=255)

                                                 cAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAgcg                                                                                       <  1:1124376/140‑1 (MQ=255)

                                                   gCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTa                                                                                                      >  1:291819/1‑123 (MQ=255)

                                                   gCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTa                                                                                                      <  2:291819/123‑1 (MQ=255)

                                                   gCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGcc                                                                                     >  1:240640/1‑140 (MQ=255)

                                                   gCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGcc                                                                                     >  1:2207378/1‑140 (MQ=255)

                                                       ggCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCacac                                                                                 >  1:1447343/1‑140 (MQ=255)

                                                         cTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCa                                                                               >  2:926577/1‑140 (MQ=255)

                                                                    gcCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCTCGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCAtt                                                                    <  2:940479/140‑1 (MQ=255)

                                                                    gcCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCAtt                                                                    <  1:2101508/140‑1 (MQ=255)

                                                                    gcCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCAACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCAtt                                                                    <  2:1375939/140‑1 (MQ=255)

                                                                     ccccAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTgc                                                                         <  1:455334/134‑1 (MQ=255)

                                                                         aaGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAgtt                                                               >  2:1491376/1‑140 (MQ=255)

                                                                             ccGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATT‑‑GCGCCACACCATGTTGCGCATTCAGTTGTTGcc                                                         >  2:1587478/1‑140 (MQ=255)

                                                                              cGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTgc                                                                         >  1:489219/1‑125 (MQ=255)

                                                                              cGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTgc                                                                         <  2:489219/125‑1 (MQ=255)

                                                                              cGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGc                                                          <  1:713925/140‑1 (MQ=255)

                                                                                cTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCa                                                        >  1:206905/1‑140 (MQ=255)

                                                                                cTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCa                                                        >  1:113294/1‑140 (MQ=255)

                                                                                   aaGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGc                                                     <  1:1914495/140‑1 (MQ=255)

                                                                                        aaaTCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTa                                                <  1:1055591/140‑1 (MQ=255)

                                                                                          aTCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACTCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACg                                              <  2:1992785/140‑1 (MQ=255)

                                                                                          aTCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAgtt                                                               <  2:963065/123‑1 (MQ=255)

                                                                                             ccTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAgg                                           <  1:863485/140‑1 (MQ=255)

                                                                                               tgctgAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTc                                         <  1:1874232/140‑1 (MQ=255)

                                                                                                gctgAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCa                                        >  2:133615/1‑140 (MQ=255)

                                                                                                gctgAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCa                                        >  2:1357430/1‑140 (MQ=255)

                                                                                                      ggTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCg                                  <  2:723503/140‑1 (MQ=255)

                                                                                                      ggTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCg                                  >  2:400125/1‑140 (MQ=255)

                                                                                                        tttGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTc                                <  1:252509/140‑1 (MQ=255)

                                                                                                        tttGACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGATGTTGCCAGGCCCGTACGAGGTCAAATTCGTc                                <  2:833800/140‑1 (MQ=255)

                                                                                                           gACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACt                             <  2:1303431/140‑1 (MQ=255)

                                                                                                           gACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACt                             >  2:1539392/1‑140 (MQ=255)

                                                                                                           gACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACt                             <  2:240640/140‑1 (MQ=255)

                                                                                                           gACGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACt                             <  2:510867/140‑1 (MQ=255)

                                                                                                             cGAAGCCAGCCCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTg                           <  1:1275549/140‑1 (MQ=255)

                                                                                                                agccagccCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCg                        <  2:2207378/140‑1 (MQ=255)

                                                                                                                agccagccCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCg                        <  2:54957/140‑1 (MQ=255)

                                                                                                                agccagccCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCg                        <  2:1725773/140‑1 (MQ=255)

                                                                                                                 gccagccCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCgg                       >  1:2136630/1‑140 (MQ=255)

                                                                                                                  ccagccCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGga                      <  1:400125/140‑1 (MQ=255)

                                                                                                                  ccagccCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGga                      <  1:133615/140‑1 (MQ=255)

                                                                                                                   cagccCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGgag                     <  1:1532226/140‑1 (MQ=255)

                                                                                                                   cagccCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGgag                     <  2:2201476/140‑1 (MQ=255)

                                                                                                                     gccCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGGagag                   <  1:97440/140‑1 (MQ=255)

                                                                                                                     gccCCAGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGGagag                   <  2:206905/140‑1 (MQ=255)

                                                                                                                          aGTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGGAGAGGTCaa              <  2:2084805/140‑1 (MQ=255)

                                                                                                                           gTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGGAGAGGTCAAt             >  2:1195179/1‑140 (MQ=255)

                                                                                                                           gTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGGAGAGGTCAAt             >  1:1646199/1‑140 (MQ=255)

                                                                                                                           gTCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGGAGAGGTCAAt             >  1:793834/1‑140 (MQ=255)

                                                                                                                            tCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGGAGAGGTCAAtt            >  1:1076091/1‑140 (MQ=255)

                                                                                                                            tCTTCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGGAGAGGTCAAtt            >  1:359926/1‑140 (MQ=255)

                                                                                                                               tCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGGAGAGGTCAATTGGt         <  2:2136630/140‑1 (MQ=255)

                                                                                                                               tCCGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGGAGAGGTCAATTGGt         <  1:2062874/140‑1 (MQ=255)

                                                                                                                                 cGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGGAGAGGTCAATTGGTTa       <  1:1491376/140‑1 (MQ=255)

                                                                                                                                 cGGCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATT‑‑GCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGGAGAGGTCAATTGGTTAGc     <  1:1587478/140‑1 (MQ=255)

                                                                                                                                  ggCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGTATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGGAGAGGTCAATTGGTTAg      <  2:2119899/140‑1 (MQ=255)

                                                                                                                                  ggCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGGAGAGGTCAATTGGTTAg      >  1:239258/1‑140 (MQ=255)

                                                                                                                                   gCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGGAGAGGTCAATTGGTTAg      >  2:686782/1‑139 (MQ=255)

                                                                                                                                   gCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGGAGAGGTCAATTGGTTAg      <  1:686782/139‑1 (MQ=255)

                                                                                                                                   gCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGGAGAGGTCAATTGGTTAGc     <  2:423895/140‑1 (MQ=255)

                                                                                                                                   gCCTCCATTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTCGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGGAGAGGTCAATTGGTTAGc     >  1:2259145/1‑140 (MQ=255)

AAAACAAACGCAATTCGTTTCATCAGAACTGTACCACCCTGTCACAGGTCAGCGAGGCTTCCGCCAGCGCCCCAAGTCCGCTTAAGGTAAATCCCTGCTGAAGGTTTGACGAAGCCAGCCCCAGTCTTCCGGCCTCCGTTTCATCAACAACGCCACGGCGTAATGCTGCCGCTACGCAGATATTCAGCGCCACACCATGTTGCGCATTCAGTTGTTGCCAGGCCCGTACGAGGTCAAATTCGTCACTTGCCGGAGAGGTCAATTGGTTAGCGTT  >  NC_000913/3475310‑3475583

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A