Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F28 I1 R1
|
258 |
142.3 |
4824480 |
99.1% |
4781059 |
138.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,531,110 |
G→A |
Q444* (CAA→TAA) |
yhgE ← |
putative transport protein YhgE |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,531,110 | 0 | G | A | 100.0%
| 684.4
/ NA
| 190 | Q444* (CAA→TAA) | yhgE | putative transport protein YhgE |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (98/92); total (98/92) |
Only 100 of 191 total aligned reads displayed.
ACGCAGGCGTCTTTTTCAATACAGGTCATCACGTTATAGCGATCCTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTGCTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCGCTCTGCTCGAGCATGTAGATA > NC_000913/3530974‑3531246
|
cGCAGGCGTCTTTTTCAATACAGGTCATCACGTTATAGCGATCCTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGa < 2:477757/140‑1 (MQ=255)
gCGTCTTTTTCAATACAGGTCATCACGTTATAGCGATCCTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATg > 2:1346061/1‑140 (MQ=255)
cGTCTTTTTCAATACAGGTCATCACGTTATAGCGATCCTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGt < 2:1953656/140‑1 (MQ=255)
gTCTTTTTCAATACAGGTCATCACGTTATAGCGATCCTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGtt < 1:1365417/140‑1 (MQ=255)
tttttCAATACAGGTCATCACGTTATAGCGATCCTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGct < 2:1565787/140‑1 (MQ=255)
tttCAATACAGGTCATCACGTTATAGCGATCCTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGctct < 1:33321/140‑1 (MQ=255)
tACAGGTCATCACGTTATAGCGATCCTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCt > 2:1696022/1‑140 (MQ=255)
tACAGGTCATCACGTTATAGCGATACTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCt > 1:39448/1‑140 (MQ=255)
aCAGGTCATCACGTTATAGCGATCCTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTa < 1:1782076/140‑1 (MQ=255)
cAGGTCATCACGTTATAGCGATCCTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTaa > 2:578988/1‑140 (MQ=255)
ggTCATCACGTTATAGCGATCCTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGct < 2:2406959/128‑1 (MQ=255)
gTCATCACGTTATAGCGATCCTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGc > 1:845815/1‑140 (MQ=255)
catcaCGTTATAGCGATCCTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCa < 1:1421129/140‑1 (MQ=255)
catcaCGTTATAGCGATCCTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCa < 2:775914/140‑1 (MQ=255)
caCGTTATAGCGATCCTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATca > 2:844594/1‑140 (MQ=255)
aCGTTATAGCGATCCTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATcag < 1:1688655/140‑1 (MQ=255)
aTCCTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCcgcg < 2:2287858/140‑1 (MQ=255)
tCCTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCcgcgc > 1:2098648/1‑140 (MQ=255)
tCCTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCcgcg < 2:1817025/139‑1 (MQ=255)
ccTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCcgcgcg > 1:796253/1‑140 (MQ=255)
tGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCcgcgcgcg < 1:1536434/140‑1 (MQ=255)
aTTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGttt < 1:2331059/140‑1 (MQ=255)
ggCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGt < 1:314391/140‑1 (MQ=255)
ggCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGt < 1:195004/140‑1 (MQ=255)
gCCGACCAGAATGTCGCATCAGGTTTAACAGAACCA‑GGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCt < 2:17732/140‑1 (MQ=255)
gACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGt > 1:1756194/1‑136 (MQ=255)
gACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCttt > 2:852473/1‑140 (MQ=255)
gACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCttt > 2:1398082/1‑140 (MQ=255)
gACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCttt > 2:1146569/1‑140 (MQ=255)
gACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCttt > 1:1003033/1‑140 (MQ=255)
aCCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCcgcg < 2:1503453/123‑1 (MQ=255)
aCCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCcgcg > 1:1503453/1‑123 (MQ=255)
aCCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTc > 2:1177827/1‑140 (MQ=255)
aCCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTc < 1:1033540/140‑1 (MQ=255)
cGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCgg < 2:1003033/140‑1 (MQ=255)
cATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCa > 1:924897/1‑140 (MQ=255)
aGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGc < 1:48148/140‑1 (MQ=255)
cAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGc < 2:2059749/140‑1 (MQ=255)
cAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGc < 2:236439/140‑1 (MQ=255)
gAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGa > 1:1490241/1‑140 (MQ=255)
aaCCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGAc > 2:142253/1‑140 (MQ=255)
aCCAGGGGCAATTAACACATTATCGGCTAATGCTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCg < 1:512450/127‑1 (MQ=255)
aCCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCg > 2:512450/1‑127 (MQ=255)
aCCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACt > 2:742834/1‑140 (MQ=255)
aCCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACt > 2:2326408/1‑140 (MQ=255)
aCCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACt > 1:506166/1‑140 (MQ=255)
aCCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACt > 1:1297092/1‑140 (MQ=255)
aCCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACt > 2:268334/1‑140 (MQ=255)
aCCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACt > 2:1260848/1‑140 (MQ=255)
ccAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTc > 2:1356018/1‑140 (MQ=255)
ggggCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAg < 1:2400440/140‑1 (MQ=255)
ggCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAgcg < 2:1098282/140‑1 (MQ=255)
gCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAgcgc < 1:1177827/140‑1 (MQ=255)
aaTTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCgcag < 2:1458237/140‑1 (MQ=255)
aTTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCgcagc > 1:894224/1‑140 (MQ=255)
aTTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCgcagc < 1:1625541/140‑1 (MQ=255)
ttAACACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCgcagca > 1:222708/1‑140 (MQ=255)
aaCACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACg < 1:468421/140‑1 (MQ=255)
aaCACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACg < 1:748596/140‑1 (MQ=255)
aaCACATTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACg < 2:506166/140‑1 (MQ=255)
aTTATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCAt > 2:1287986/1‑140 (MQ=255)
ttATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCgcag < 2:471405/130‑1 (MQ=255)
ttATCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCgcag > 1:471405/1‑130 (MQ=255)
aTCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCgcag > 2:321571/1‑128 (MQ=255)
aTCGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGc > 1:2254317/1‑140 (MQ=255)
cGGCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGa < 2:2098648/140‑1 (MQ=255)
gCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGAcc > 2:361658/1‑140 (MQ=255)
gCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGAcc > 1:1119980/1‑140 (MQ=255)
gCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGAcc > 2:2152380/1‑140 (MQ=255)
gCTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGAcc > 1:1919123/1‑140 (MQ=255)
cTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAATCCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCg < 1:1093380/140‑1 (MQ=255)
cTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCgcagca < 2:1334968/125‑1 (MQ=255)
cTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCgcagca > 1:1334968/1‑125 (MQ=255)
cTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCg > 1:417216/1‑140 (MQ=255)
cTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCg < 1:578988/140‑1 (MQ=255)
cTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCg > 2:1607093/1‑140 (MQ=255)
cTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCg > 1:2024016/1‑140 (MQ=255)
cTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCg > 1:2191878/1‑140 (MQ=255)
cTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCg < 2:1192660/140‑1 (MQ=255)
cTAATACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCg > 1:752739/1‑140 (MQ=255)
aaTACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGTGACCGct > 2:636706/1‑140 (MQ=255)
aTACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCGctc > 2:1672980/1‑140 (MQ=255)
tACTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCGctct > 2:2024575/1‑140 (MQ=255)
cTTTTTCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACT‑AAGCGCAGCACGTCCATAGCGACCGCTCTGCt < 1:268334/140‑1 (MQ=255)
tttttCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCGCTCTGCt < 1:648733/140‑1 (MQ=255)
tttttCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCGCTCTGCt < 1:2075256/140‑1 (MQ=255)
tttttCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCGCTCTGCt < 1:2152380/140‑1 (MQ=255)
ttttCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCGCTCTGCTc < 2:752739/140‑1 (MQ=255)
tttCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCGCTCTGCTCg < 2:395815/140‑1 (MQ=255)
tttCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCGCTCTGCTCg < 2:924897/140‑1 (MQ=255)
tttCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCGCTCTGCTCg < 2:1195238/140‑1 (MQ=255)
tttCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCGCTCTGCTCg < 2:215112/140‑1 (MQ=255)
tttCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCGCTCTGCTCg < 1:183420/140‑1 (MQ=255)
tttCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCGCTCTGCTCg > 2:183420/1‑140 (MQ=255)
ttCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCGCTCTGCTCGa > 1:2317737/1‑140 (MQ=255)
tCCGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCGCTCTGCTCGAg < 1:37430/140‑1 (MQ=255)
ccGATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCGCTCTGCTCGAGc > 2:1072998/1‑140 (MQ=255)
gATACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCGCTCTGCTCGAGCAt < 1:1072998/140‑1 (MQ=255)
aTACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCGCTCTGCTCGAGCATg > 1:1253928/1‑140 (MQ=255)
tACCTGTTACTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCGCTCTGCTCGAGCATGt < 2:2223744/140‑1 (MQ=255)
|
ACGCAGGCGTCTTTTTCAATACAGGTCATCACGTTATAGCGATCCTGGATTAAGGCCGACCAGAATGTCGCATCAGGTTTAACAGAACCAGGGGCAATTAACACATTATCGGCTAATACTTTTTCCGATACCTGTTGCTGAAGATGTTGCTCTCCATCTAACGCCATCAGCAGATCCCGCGCGCGTTTCGGGTCTTTCATAAACCCGGCATCGCTTTTCAGCGACTCAAGCGCAGCACGTCCATAGCGACCGCTCTGCTCGAGCATGTAGATA > NC_000913/3530974‑3531246
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
