Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,534,231	A→G	T472A (ACC→GCC)	pck →	phosphoenolpyruvate carboxykinase (ATP)

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,534,231	0	A	G	100.0%	453.6 / NA	125	T472A (ACC→GCC)	pck	phosphoenolpyruvate carboxykinase (ATP)
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (64/61); total (64/61)

Only 100 of 125 total aligned reads displayed.

GAAACGTATGCAGGCGGCGGGCGCGCAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAACCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGAAAAAGCCGAAACCCTGGCGAAAC  >  NC_000913/3534095‑3534363

gAAACGTATGCAGGCGGCGGGCGCGCAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCt                                                                                                                                   >  2:657453/1‑140 (MQ=255)

gAAACGTATGCAGGCGGCGGGCGCGCAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCt                                                                                                                                   >  2:1819119/1‑140 (MQ=255)

  aaCGTATGCAGGCGGCGGGCGCGCAGGCTTATCTGGTTAACATTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTc                                                                                                                                 >  1:1899497/1‑140 (MQ=255)

   aCGTATGCAGGCGGCGGGCGCGCAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCa                                                                                                                                <  1:657453/140‑1 (MQ=255)

     gTATGCAGGCGGCGGGCGCGCAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCAct                                                                                                                              <  2:1695901/140‑1 (MQ=255)

        tGCAGGCGGCGGGCGCGCAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTg                                                                                                                           >  1:511301/1‑140 (MQ=255)

        tGCAGGCGGCGGGCGCGCAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTg                                                                                                                           >  2:137758/1‑140 (MQ=255)

         gCAGGCGGCGGGCGCGCAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGc                                                                                                                          >  1:1595717/1‑140 (MQ=255)

          cAGGCGGCGGGCGCGCAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGTAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGcc                                                                                                                         <  2:2099886/140‑1 (MQ=255)

           aGGCGGCGGGCGCGCAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCg                                                                                                                        <  1:1156135/140‑1 (MQ=255)

           aGGCGGCGGGCGCGCAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCg                                                                                                                        >  1:67247/1‑140 (MQ=255)

             gcggcgGGCGCGCAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGAt                                                                                                                      >  1:1714603/1‑140 (MQ=255)

               ggcgggcgCGCAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGt                                                                                                                    <  1:1356100/140‑1 (MQ=255)

                gcgggcgCGCAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGcc                                                                                                                         >  2:527004/1‑134 (MQ=255)

                gcgggcgCGCAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGcc                                                                                                                         <  1:527004/134‑1 (MQ=255)

                gcgggcgCGCAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGtt                                                                                                                   >  2:302884/1‑140 (MQ=255)

                 cgggcgCGCAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGttt                                                                                                                  >  1:1093493/1‑140 (MQ=255)

                    gcgcgcAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAAc                                                                                                               <  2:1942097/140‑1 (MQ=255)

                        gcAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTgg                                                                                                           <  2:794114/140‑1 (MQ=255)

                        gcAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTgg                                                                                                           <  2:1032657/140‑1 (MQ=255)

                               tATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATccc                                                                                                    <  2:1595717/140‑1 (MQ=255)

                                      ttAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGaa                                                                                             >  2:2377954/1‑140 (MQ=255)

                                      ttAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGaa                                                                                             >  1:1600257/1‑140 (MQ=255)

                                      ttAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGaa                                                                                             >  1:549559/1‑140 (MQ=255)

                                      ttAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGaa                                                                                             >  2:930352/1‑140 (MQ=255)

                                      ttAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGaa                                                                                             >  1:484302/1‑140 (MQ=255)

                                      ttAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGaa                                                                                             >  1:509992/1‑140 (MQ=255)

                                          cacTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGc                                                                                         <  1:137758/140‑1 (MQ=255)

                                          cacTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGc                                                                                         <  1:648841/140‑1 (MQ=255)

                                           acTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGcc                                                                                        >  1:981073/1‑140 (MQ=255)

                                           acTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGcc                                                                                        <  2:1860915/140‑1 (MQ=255)

                                           acTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGcc                                                                                        <  1:1990738/140‑1 (MQ=255)

                                           acTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGcc                                                                                        <  1:176845/140‑1 (MQ=255)

                                               gctggAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATccc                                                                                                    <  1:2204352/124‑1 (MQ=255)

                                               gctggAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATccc                                                                                                    >  2:2204352/1‑124 (MQ=255)

                                               gctggAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGc                                                                                    >  1:871935/1‑140 (MQ=255)

                                               gctggAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGc                                                                                    >  2:886477/1‑140 (MQ=255)

                                               gctggAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGc                                                                                    >  2:558506/1‑140 (MQ=255)

                                               gctggAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGc                                                                                    >  2:1516729/1‑140 (MQ=255)

                                               gctggAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGc                                                                                    >  2:177711/1‑140 (MQ=255)

                                               gctggAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGc                                                                                    >  2:2407349/1‑140 (MQ=255)

                                                    aaCGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGa                                                                               <  1:177711/140‑1 (MQ=255)

                                                         cACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGa                                                                          >  2:854955/1‑140 (MQ=255)

                                                          aCTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGaa                                                                         <  2:1899497/140‑1 (MQ=255)

                                                          aCTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGaa                                                                         <  2:1725346/140‑1 (MQ=255)

                                                             ggCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACg                                                                           >  1:1179544/1‑135 (MQ=255)

                                                             ggCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACg                                                                           <  2:1179544/135‑1 (MQ=255)

                                                              gCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGAtt                                                                     >  1:2065982/1‑140 (MQ=255)

                                                              gCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGAtt                                                                     >  1:2354271/1‑140 (MQ=255)

                                                                   cGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGa                                                                >  1:356881/1‑140 (MQ=255)

                                                                   cGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGa                                                                <  2:511301/140‑1 (MQ=255)

                                                                    gTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGAt                                                               <  1:558506/140‑1 (MQ=255)

                                                                    gTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGAt                                                               <  2:1347089/140‑1 (MQ=255)

                                                                       tctcGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCcg                                                            <  2:981073/140‑1 (MQ=255)

                                                                        ctcGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCcgc                                                           >  1:1347053/1‑140 (MQ=255)

                                                                        ctcGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCcgc                                                           >  2:1729247/1‑140 (MQ=255)

                                                                            aTTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTaa                                                       >  1:1602759/1‑140 (MQ=255)

                                                                             ttAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAac                                                      >  1:1024992/1‑140 (MQ=255)

                                                                                  gATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGAt                                                               <  2:938226/126‑1 (MQ=255)

                                                                                     aCCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGc                                              <  1:930352/140‑1 (MQ=255)

                                                                                     aCCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGc                                              <  1:543093/140‑1 (MQ=255)

                                                                                     aCCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGc                                              <  1:2076662/140‑1 (MQ=255)

                                                                                     aCCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGc                                              >  2:1926391/1‑140 (MQ=255)

                                                                                     aCCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGc                                              >  1:1856176/1‑140 (MQ=255)

                                                                                      cccGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATc                                                              <  2:1543881/123‑1 (MQ=255)

                                                                                      cccGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATc                                                              >  1:1543881/1‑123 (MQ=255)

                                                                                       ccGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCtt                                            >  2:2159598/1‑140 (MQ=255)

                                                                                        cgcgCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTtc                                           <  1:1282487/140‑1 (MQ=255)

                                                                                          cgcCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTtctc                                         <  1:1485915/140‑1 (MQ=255)

                                                                                          cgcCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTtctc                                         >  2:1277486/1‑140 (MQ=255)

                                                                                              aTTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGa                                     >  2:2214271/1‑140 (MQ=255)

                                                                                               ttATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGaa                                    <  2:2354271/140‑1 (MQ=255)

                                                                                                 aTCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCtt                                            <  1:2080084/130‑1 (MQ=255)

                                                                                                 aTCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACa                                  >  1:1711515/1‑140 (MQ=255)

                                                                                                    gACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTg                               >  2:524384/1‑140 (MQ=255)

                                                                                                     aCGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTgg                              <  1:1335975/140‑1 (MQ=255)

                                                                                                     aCGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTgg                              <  1:2377954/140‑1 (MQ=255)

                                                                                                      cGCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGc                             <  2:1093493/140‑1 (MQ=255)

                                                                                                       gCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCa                            >  1:2081226/1‑140 (MQ=255)

                                                                                                       gCCATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCa                            >  2:453279/1‑140 (MQ=255)

                                                                                                         cATCCTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAgg                          >  2:1750047/1‑140 (MQ=255)

                                                                                                            ccTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGaaa                       <  1:990517/140‑1 (MQ=255)

                                                                                                             cTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGaaaa                      <  1:2407349/140‑1 (MQ=255)

                                                                                                             cTCAACGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGaaaa                      <  1:854955/140‑1 (MQ=255)

                                                                                                                  cGGTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGAAAAAGCCg                 <  1:2159598/140‑1 (MQ=255)

                                                                                                                    gTTCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGAAAAAGCCGaa               >  1:146232/1‑140 (MQ=255)

                                                                                                                     ttCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGAAAAAGCCGaaa              >  1:642014/1‑140 (MQ=255)

                                                                                                                     ttCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGAAAAAGCCGaaa              >  1:81285/1‑140 (MQ=255)

                                                                                                                     ttCGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGAAAAAGCCGaaa              >  2:1974509/1‑140 (MQ=255)

                                                                                                                       cGCTGGATAATGCAGAAGCCTTCGCTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGAAAAAGCCGAAAcc            >  2:1942702/1‑140 (MQ=255)

                                                                                                                       cGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGAAAAAGCCGAAAcc            >  1:1245617/1‑140 (MQ=255)

                                                                                                                       cGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGAAAAAGCCGAAAcc            >  1:2164764/1‑140 (MQ=255)

                                                                                                                       cGCTGGATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGAAAAAGCCGAAAcc            >  2:748583/1‑140 (MQ=255)

                                                                                                                           ggATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGAAAAAGCCGAAACCCTgg        <  2:81285/140‑1 (MQ=255)

                                                                                                                           ggATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGAAAAAGCCGAAACCCTgg        <  1:2015338/140‑1 (MQ=255)

                                                                                                                           ggATAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGAAAAAGCCGAAACCCTgg        <  1:302884/140‑1 (MQ=255)

                                                                                                                             aTAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGAAAGAGCCGAAACCCTGGCg      <  2:2046610/140‑1 (MQ=255)

                                                                                                                             aTAATGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGACGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGAAAAAGCCGAAACCCTGGCg      <  2:509992/140‑1 (MQ=255)

                                                                                                                                aTGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGAAAAAGCCGAAACCCTGGCGaaa   <  2:2132872/140‑1 (MQ=255)

                                                                                                                                 tGCAGAAGCCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGAAAAAGCCGAAACCCTGGCGAAAc  >  1:2228966/1‑140 (MQ=255)

GAAACGTATGCAGGCGGCGGGCGCGCAGGCTTATCTGGTTAACACTGGCTGGAACGGCACTGGCAAACGTATCTCGATTAAAGATACCCGCGCCATTATCGACGCCATCCTCAACGGTTCGCTGGATAATGCAGAAACCTTCACTCTGCCGATGTTTAACCTGGCGATCCCAACCGAACTGCCGGGCGTAGACACGAAGATTCTCGATCCGCGTAACACCTACGCTTCTCCGGAACAGTGGCAGGAAAAAGCCGAAACCCTGGCGAAAC  >  NC_000913/3534095‑3534363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A