Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,561,621	C→T	G68D (GGC→GAC)	glpE ←	thiosulfate sulfurtransferase GlpE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,561,621	0	C	T	100.0%	543.5 / NA	153	G68D (GGC→GAC)	glpE	thiosulfate sulfurtransferase GlpE
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (77/76); total (77/76)

Only 100 of 155 total aligned reads displayed.

CAGTATAAAGCGTTACGCGCCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGCCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGAAACTCTGTGGATCGCGAATATCGACC  >  NC_000913/3561485‑3561755

cAGTATAAAGCGTTACGCGCCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGt                                                                                                                                     <  2:551893/140‑1 (MQ=255)

cAGTATAAAGCGTTACGCGCCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGt                                                                                                                                     <  1:487968/140‑1 (MQ=255)

 aGTATAAAGCGTTACGCGCCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTg                                                                                                                                    >  2:618693/1‑140 (MQ=255)

   tataAAGCGTTACGCGCCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGAt                                                                                                                                  <  2:713092/140‑1 (MQ=255)

   tataAAGCGTTACGCGCCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGAt                                                                                                                                  >  1:1863380/1‑140 (MQ=255)

   tataAAGCGTTACGCGCCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGAt                                                                                                                                  <  1:1730572/140‑1 (MQ=255)

   tataAAGCGTTACGCGCCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGAt                                                                                                                                  <  2:1387869/140‑1 (MQ=255)

         gCGTTACGCGCCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAAcaca                                                                                                                            <  1:1305235/140‑1 (MQ=255)

         gCGTTACGCGCCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAAcaca                                                                                                                            <  2:1658484/140‑1 (MQ=255)

             tACGCGCCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACAcatcac                                                                                                                        >  1:1579446/1‑140 (MQ=255)

             tACGCGCCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACAcatcac                                                                                                                        >  1:585880/1‑140 (MQ=255)

             tACGCGCCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACAcatcac                                                                                                                        >  2:1258760/1‑140 (MQ=255)

             tACGCGCCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACAcatcac                                                                                                                        >  2:1686865/1‑140 (MQ=255)

             tACGCGCCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACAcatcac                                                                                                                        >  1:396733/1‑140 (MQ=255)

             tACGCGCCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACAcatcac                                                                                                                        <  1:1321623/140‑1 (MQ=255)

             tACGCGCCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACAcatcac                                                                                                                        >  1:1186233/1‑140 (MQ=255)

             tACGCGCCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACAcatcac                                                                                                                        >  2:655915/1‑140 (MQ=255)

             tACGCGCCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACAcatcac                                                                                                                        >  1:2088196/1‑140 (MQ=255)

                gcgcCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACAcatcaccat                                                                                                                     <  2:1026506/140‑1 (MQ=255)

                        cGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCATCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAg                                                                                                             <  2:1668027/140‑1 (MQ=255)

                            aCCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTc                                                                                                         <  1:1592802/140‑1 (MQ=255)

                              ctctGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACAcatcac                                                                                                                        <  1:2163957/123‑1 (MQ=255)

                              ctctGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACAcatcac                                                                                                                        >  2:2163957/1‑123 (MQ=255)

                              ctctGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCaa                                                                                                       <  2:2098029/140‑1 (MQ=255)

                              ctctGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCaa                                                                                                       >  2:897567/1‑140 (MQ=255)

                                ctGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAg                                                                                                     >  1:98406/1‑140 (MQ=255)

                                 tGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGt                                                                                                    >  1:1175616/1‑140 (MQ=255)

                                        aaCTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATc                                                                                             <  2:1175616/140‑1 (MQ=255)

                                        aaCTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATc                                                                                             <  1:1823413/140‑1 (MQ=255)

                                        aaCTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATc                                                                                             <  1:695252/140‑1 (MQ=255)

                                        aaCTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCATGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATc                                                                                             <  1:2089840/140‑1 (MQ=255)

                                                ttGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATaa                                                                                     <  1:1087839/140‑1 (MQ=255)

                                                 tGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATaaa                                                                                    <  1:1953242/140‑1 (MQ=255)

                                                  gCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATaaaa                                                                                   >  2:774349/1‑140 (MQ=255)

                                                  gCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATaaaa                                                                                   >  2:1728945/1‑140 (MQ=255)

                                                   ccAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAg                                                                                  <  2:1701053/140‑1 (MQ=255)

                                                    cAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAgc                                                                                 >  2:1627089/1‑140 (MQ=255)

                                                     aGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAgcg                                                                                >  1:574770/1‑140 (MQ=255)

                                                      ggCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAgcgc                                                                               <  1:1686865/140‑1 (MQ=255)

                                                       gCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGcc                                                                              <  2:1864872/140‑1 (MQ=255)

                                                          tCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAg                                                                           <  1:1728945/140‑1 (MQ=255)

                                                           cAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGc                                                                          <  1:2163293/140‑1 (MQ=255)

                                                                 cgccgTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTc                                                                     <  1:169109/139‑1 (MQ=255)

                                                                   ccgTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGtt                                                                  >  2:843572/1‑140 (MQ=255)

                                                                        aaTGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTa                                                             <  2:2007266/140‑1 (MQ=255)

                                                                        aaTGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTa                                                             <  1:1624244/140‑1 (MQ=255)

                                                                             tataGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATgg                                                        <  1:895764/140‑1 (MQ=255)

                                                                             tataGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATgg                                                        <  2:1106811/140‑1 (MQ=255)

                                                                                aGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGaaa                                                     >  2:327959/1‑140 (MQ=255)

                                                                                  aCCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGc                                                   >  1:422546/1‑140 (MQ=255)

                                                                                  aCCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGc                                                   >  1:865187/1‑140 (MQ=255)

                                                                                    cacaTCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCt                                                 >  2:1600076/1‑140 (MQ=255)

                                                                                    cacaTCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCt                                                 >  2:2001245/1‑140 (MQ=255)

                                                                                      caTCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTa                                                             >  2:1829736/1‑126 (MQ=255)

                                                                                      caTCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGc                                               >  1:953431/1‑140 (MQ=255)

                                                                                      caTCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGc                                               >  1:959305/1‑140 (MQ=255)

                                                                                       aTCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCa                                              >  2:350652/1‑140 (MQ=255)

                                                                                       aTCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCa                                              <  1:1258760/140‑1 (MQ=255)

                                                                                       aTCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCa                                              >  2:708468/1‑140 (MQ=255)

                                                                                       aTCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCa                                              >  1:1023801/1‑140 (MQ=255)

                                                                                       aTCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCa                                              >  2:1112681/1‑140 (MQ=255)

                                                                                         cGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCAcc                                            >  2:1132158/1‑140 (MQ=255)

                                                                                           tAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGc                                          >  1:2296875/1‑140 (MQ=255)

                                                                                           tAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGc                                          <  1:897567/140‑1 (MQ=255)

                                                                                            aGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCa                                         >  1:64757/1‑140 (MQ=255)

                                                                                              cccTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGTAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATg                                       <  2:232504/140‑1 (MQ=255)

                                                                                              cccTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATg                                       >  1:524031/1‑140 (MQ=255)

                                                                                                 tGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTcc                                    >  2:1325377/1‑140 (MQ=255)

                                                                                                 tGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTcc                                    <  1:1132158/140‑1 (MQ=255)

                                                                                                   ttGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTcc                                    >  1:2396873/1‑138 (MQ=255)

                                                                                                   ttGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTcc                                    <  2:2396873/138‑1 (MQ=255)

                                                                                                   ttGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCa                                  <  1:708468/140‑1 (MQ=255)

                                                                                                     gcagcaGATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCAtt                                >  1:2282466/1‑140 (MQ=255)

                                                                                                      cagcagATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTg                               <  1:352605/140‑1 (MQ=255)

                                                                                                        gcagATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCg                             <  2:524031/140‑1 (MQ=255)

                                                                                                        gcagATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCg                             <  2:422546/140‑1 (MQ=255)

                                                                                                         cagATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGa                            <  2:1333431/140‑1 (MQ=255)

                                                                                                         cagATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGa                            <  2:2138314/140‑1 (MQ=255)

                                                                                                          agATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGaa                           <  2:585880/140‑1 (MQ=255)

                                                                                                           gATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGc                                          >  1:1332791/1‑124 (MQ=255)

                                                                                                           gATACTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGaaa                          <  1:350652/140‑1 (MQ=255)

                                                                                                              aCTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGAAActc                       >  1:187560/1‑140 (MQ=255)

                                                                                                               cTGCGCCGCGCCTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGAAActct                      <  1:774349/140‑1 (MQ=255)

                                                                                                                 gcgccgcgccTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGaa                           >  2:768993/1‑133 (MQ=255)

                                                                                                                 gcgccgcgccTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGaa                           <  1:768993/133‑1 (MQ=255)

                                                                                                                  cgccgcgccTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGAAACTCtgtg                   >  2:381171/1‑140 (MQ=255)

                                                                                                                   gccgcgccTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCa                                  <  1:1600078/124‑1 (MQ=255)

                                                                                                                   gccgcgccTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCa                                  >  2:1600078/1‑124 (MQ=255)

                                                                                                                   gccgcgccTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTg                               <  2:1070869/127‑1 (MQ=255)

                                                                                                                   gccgcgccTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGAAACTCTGTgg                  <  1:2001245/140‑1 (MQ=255)

                                                                                                                   gccgcgccTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGAAACTCTGTgg                  <  2:1223586/140‑1 (MQ=255)

                                                                                                                     cgcgccTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGAAACTCTGTGGAt                >  2:297197/1‑140 (MQ=255)

                                                                                                                     cgcgccTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGAAACTCTGTGGAt                >  2:2363369/1‑140 (MQ=255)

                                                                                                                       cgccTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGAAACTCTGTgg                  <  2:2363095/136‑1 (MQ=255)

                                                                                                                       cgccTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGAAACTCTGTGGATcg              >  1:849001/1‑140 (MQ=255)

                                                                                                                       cgccTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGAAACTCTGTGGATcg              >  2:2111883/1‑140 (MQ=255)

                                                                                                                        gccTTTGCTGCTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGAAACTCTGTGGATcgc             <  2:187560/140‑1 (MQ=255)

                                                                                                                             tgctgcTATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGAAACTCTGTGGATCGCGAata        <  2:865187/140‑1 (MQ=255)

                                                                                                                                   tATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGAAACTCTGTGGATCGCGAATATCGAcc  <  1:1005197/140‑1 (MQ=255)

                                                                                                                                   tATTGTCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGAAACTCTGTGGATCGCGAATATCGAcc  <  1:1456155/140‑1 (MQ=255)

CAGTATAAAGCGTTACGCGCCGTACGCCACCTCTGCGGGAAACTGACGTTGCCAGGCTTCAAAGCCGCCGTCAATGCTATAGACCACATCGTAGCCCTGTTGCAGCAGATACTGCGCCGCGCCTTTGCTGCTATTGCCGTGATAACACATCACCATCACCGGAGTGTCAAAGTCGTTATCACGCATAAAAGCGCCCAGCGTGTCGTTGGTTAAATGGAAAGCCTGCACCGCATGTCCCATTGCGAAACTCTGTGGATCGCGAATATCGACC  >  NC_000913/3561485‑3561755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A