Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,725,214 G→A V35V (GTC→GTT)  glyQ ← glycine‑‑tRNA ligase subunit alpha

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,725,2140GA100.0% 630.1 / NA 175V35V (GTC→GTT) glyQglycine‑‑tRNA ligase subunit alpha
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (84/91);  total (84/91)

Only 100 of 175 total aligned reads displayed.

TAGTAGTGCTGTAAACGGTTGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCGACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTGCTGGATACGTGTGGATTTAA  >  NC_000913/3725077‑3725349
                                                                                                                                         |                                                                                                                                       
tagtagTGCTGTAAACGGTTGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAAc                                                                                                                                       >  2:1711723/1‑140 (MQ=255)
tagtagTGCTGTAAACGGTTGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAAc                                                                                                                                       >  1:2356023/1‑140 (MQ=255)
   tagtGCTGTAAACGGTTGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTc                                                                                                                                    >  2:1935389/1‑140 (MQ=255)
      tGCTGTAAACGGTTGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACGTAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCAt                                                                                                                                 >  2:2147753/1‑140 (MQ=255)
        cTGTAAACGGTTGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGt                                                                                                                               >  2:2046643/1‑140 (MQ=255)
        cTGTAAACGGTTGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGt                                                                                                                               >  2:60920/1‑140 (MQ=255)
        cTGTAAACGGTTGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGt                                                                                                                               >  1:1610869/1‑140 (MQ=255)
         tGTAAACGGTTGGGGTTTTCGCCGTAGCGACCATCGGGCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTc                                                                                                                              >  2:2380558/1‑140 (MQ=255)
         tGTAAACGGTTGGGGTTTTAGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTc                                                                                                                              >  2:1780948/1‑140 (MQ=255)
          gTAAACGGTTGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTcc                                                                                                                             >  2:1749560/1‑140 (MQ=255)
          gTAAACGGTTGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTcc                                                                                                                             <  1:1728484/140‑1 (MQ=255)
           tAAACGGTTGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCa                                                                                                                            >  2:353088/1‑140 (MQ=255)
           tAAACGGTTGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCa                                                                                                                            <  1:639707/140‑1 (MQ=255)
           tAAACGGTTGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCa                                                                                                                            >  2:2254105/1‑140 (MQ=255)
           tAAACGGTTGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCa                                                                                                                            >  1:817310/1‑140 (MQ=255)
            aaaCGGTTGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCaa                                                                                                                           >  2:2258454/1‑140 (MQ=255)
            aaaCGGTTGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGATGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCaa                                                                                                                           <  1:1540501/140‑1 (MQ=255)
               cGGTTGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATgg                                                                                                                        <  2:2327318/140‑1 (MQ=255)
               cGGTTGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATgg                                                                                                                        <  2:817310/140‑1 (MQ=255)
                ggTTGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGt                                                                                                                       >  2:1628802/1‑140 (MQ=255)
                  ttGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTcc                                                                                                                                   >  2:251574/1‑126 (MQ=255)
                  ttGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTcc                                                                                                                             <  2:1891120/132‑1 (MQ=255)
                  ttGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTcc                                                                                                                             >  1:1891120/1‑132 (MQ=255)
                  ttGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGt                                                                                                                       >  1:706087/1‑138 (MQ=255)
                  ttGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGt                                                                                                                       <  2:706087/138‑1 (MQ=255)
                    ggggTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGaa                                                                                                                   >  1:530849/1‑140 (MQ=255)
                          ttCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATgg                                                                                                             >  2:1395372/1‑140 (MQ=255)
                          ttCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATgg                                                                                                             <  2:399558/140‑1 (MQ=255)
                            cGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTg                                                                                                           >  2:2010108/1‑140 (MQ=255)
                            cGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTg                                                                                                           <  2:1441484/140‑1 (MQ=255)
                            cGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTg                                                                                                           <  1:1138542/140‑1 (MQ=255)
                            cGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTg                                                                                                           <  2:1677191/140‑1 (MQ=255)
                            cGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTg                                                                                                           <  1:561524/140‑1 (MQ=255)
                            cGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTg                                                                                                           <  2:533779/140‑1 (MQ=255)
                            cGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCACGCCAACTTCCATGTCCAATGGTTGAACAATGGTg                                                                                                           <  1:385655/140‑1 (MQ=255)
                            cGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCAGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACa                                                                                                                 >  2:1204477/1‑134 (MQ=255)
                              ccGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCa                                                                                                         <  1:1935389/140‑1 (MQ=255)
                                 tAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGcc                                                                                                      <  1:2258454/140‑1 (MQ=255)
                                  aGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGccc                                                                                                     >  1:350689/1‑140 (MQ=255)
                                         aTCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAg                                                                                              <  2:1078553/140‑1 (MQ=255)
                                         aTCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAg                                                                                              >  2:1656271/1‑140 (MQ=255)
                                         aTCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAg                                                                                              <  1:1780948/140‑1 (MQ=255)
                                              tcggGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAg                                                                                         <  1:2380558/140‑1 (MQ=255)
                                              tcggGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAg                                                                                         >  1:2367419/1‑140 (MQ=255)
                                              tcggGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAg                                                                                         <  2:1256878/140‑1 (MQ=255)
                                              tcggGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAg                                                                                         <  1:2204654/140‑1 (MQ=255)
                                                gggCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTa                                                                                       <  2:2367419/140‑1 (MQ=255)
                                                 ggCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGATTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTaa                                                                                      >  1:1029975/1‑140 (MQ=255)
                                                       gagaAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGt                                                                                <  1:1979504/140‑1 (MQ=255)
                                                           aGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAgg                                                                            >  2:129828/1‑140 (MQ=255)
                                                             gCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTc                                                                          <  1:1441671/140‑1 (MQ=255)
                                                                gAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAgg                                                                       >  2:1323190/1‑140 (MQ=255)
                                                                   cATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATc                                                                    <  2:55381/140‑1 (MQ=255)
                                                                   cATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATc                                                                    <  2:2077104/140‑1 (MQ=255)
                                                                   cATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATc                                                                    <  1:2010108/140‑1 (MQ=255)
                                                                      aaGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAg                                                                 <  2:1133151/140‑1 (MQ=255)
                                                                       agcagcCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGc                                                                >  1:2325622/1‑140 (MQ=255)
                                                                       agcagcCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGc                                                                <  2:708568/140‑1 (MQ=255)
                                                                           gccgccATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTg                                                            >  2:316287/1‑140 (MQ=255)
                                                                             cgccATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGa                                                          <  1:1474343/140‑1 (MQ=255)
                                                                              gccATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGaa                                                         >  1:722509/1‑140 (MQ=255)
                                                                              gccATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGaa                                                         >  1:500947/1‑140 (MQ=255)
                                                                                    ggTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCt                                                   <  2:530849/140‑1 (MQ=255)
                                                                                           gCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCa                                            <  1:1085765/140‑1 (MQ=255)
                                                                                                aGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACtt                                       >  1:479644/1‑140 (MQ=255)
                                                                                                aGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACtt                                       >  2:468489/1‑140 (MQ=255)
                                                                                                  cTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACtttt                                     <  2:722509/140‑1 (MQ=255)
                                                                                                  cTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACtttt                                     <  1:2254105/140‑1 (MQ=255)
                                                                                                  cTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACtttt                                     <  1:1286207/140‑1 (MQ=255)
                                                                                                  cTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACtttt                                     <  2:701476/140‑1 (MQ=255)
                                                                                                  cTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACtttt                                     <  2:500947/140‑1 (MQ=255)
                                                                                                  cTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACtttt                                     <  2:479644/140‑1 (MQ=255)
                                                                                                    cgcgCAGACAGGTCATTGGGTGAGAGATTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGc                                   <  2:1029975/140‑1 (MQ=255)
                                                                                                     gcgcAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCa                                  <  1:129828/140‑1 (MQ=255)
                                                                                                     gcgcAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCa                                  <  1:779029/140‑1 (MQ=255)
                                                                                                       gcaggcagGTCATTGGGTGAGAGGTTCCCGCGACAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCata                                <  2:280404/140‑1 (MQ=255)
                                                                                                       gcAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCata                                <  1:316287/140‑1 (MQ=255)
                                                                                                               gTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCg                        <  2:88521/140‑1 (MQ=255)
                                                                                                               gTCATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCg                        >  2:1103849/1‑140 (MQ=255)
                                                                                                                 cATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTg                      <  2:37027/140‑1 (MQ=255)
                                                                                                                 cATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTg                      <  1:2116518/140‑1 (MQ=255)
                                                                                                                 cATTGGGTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTg                      <  1:2147753/140‑1 (MQ=255)
                                                                                                                     gggTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTGCTgg                  >  1:2153785/1‑140 (MQ=255)
                                                                                                                     gggTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTGCTgg                  >  1:1679907/1‑140 (MQ=255)
                                                                                                                      ggTGAGAGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTGCTGGa                 <  2:1465705/140‑1 (MQ=255)
                                                                                                                         gagaGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTg                      >  1:2282289/1‑132 (MQ=255)
                                                                                                                         gagaGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTg                      <  2:2282289/132‑1 (MQ=255)
                                                                                                                         gagaGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTGCTGGa                 <  1:828611/137‑1 (MQ=255)
                                                                                                                         gagaGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTGCTGGa                 >  2:828611/1‑137 (MQ=255)
                                                                                                                         gagaGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTGCTGGATAc              >  1:1358918/1‑140 (MQ=255)
                                                                                                                         gagaGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTGCTGGATAc              >  2:1451796/1‑140 (MQ=255)
                                                                                                                         gagaGGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTGCTGGATAc              >  2:1880039/1‑140 (MQ=255)
                                                                                                                          agagGTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTGCTGGATACg             >  2:2055396/1‑140 (MQ=255)
                                                                                                                             ggTTCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTGCTGGATACgtgt          <  1:1451796/140‑1 (MQ=255)
                                                                                                                                tCCCGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAACCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTGCTGGATACGTGTGGa       <  1:2061232/140‑1 (MQ=255)
                                                                                                                                 cccGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTGCTGGATACGTGTGGAt      >  2:2362411/1‑140 (MQ=255)
                                                                                                                                 cccGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTGCTGGATACGTGTGGAt      >  1:1224178/1‑140 (MQ=255)
                                                                                                                                 cccGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTGCTGGATACGTGTGGAt      >  2:97983/1‑140 (MQ=255)
                                                                                                                                  ccGCGCCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTGCTGGATACGTGTGGAtt     >  1:2731/1‑140 (MQ=255)
                                                                                                                                     cgcCAACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTGCTGGATACGTGTGGATTTaa  <  1:707601/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
TAGTAGTGCTGTAAACGGTTGGGGTTTTCGCCGTAGCGACCATCGGTCGGGCGACGAGAAGGCTGAACATAAGCAGCCGCCATCGGTTCTGGCCCCAGCTCGCGCAGACAGGTCATTGGGTGAGAGGTTCCCGCGCCGACTTCCATGTCCAATGGTTGAACAATGGTGCAGCCCTGGCGAGCCCAGTAATCCTGTAAGGTCAGGATCAAGCCCTGGAAGGTCCTGGTATCAAACTTTTGCATATTATTTCGTGCTGGATACGTGTGGATTTAA  >  NC_000913/3725077‑3725349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A