Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,882,822	A→G	V303A (GTG→GCG)	dnaA ←	chromosomal replication initiator protein DnaA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,882,822	0	A	G	100.0%	513.6 / NA	142	V303A (GTG→GCG)	dnaA	chromosomal replication initiator protein DnaA
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (74/68); total (74/68)

Only 100 of 147 total aligned reads displayed.

GTTGGCATTGGCAATGACGCGGTTCAGCGCCCCTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCACACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATCCGAGGTGAGAATGATCTGTTGATTACCTTCCA  >  NC_000913/3882686‑3882957

gTTGGCATTGGCAATGACGCGGTTCAGCGCCCCTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCgcac                                                                                                                                      <  2:1679167/140‑1 (MQ=255)

  tggcattggcaATGACGCGGTTCAGCGCCCCTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACgg                                                                                                                                    <  2:916268/140‑1 (MQ=255)

     cattggcaATGACGCGGTTCAGCGCCCCTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACg                                                                                                                                     >  2:1574995/1‑136 (MQ=255)

         ggcaATGACGCGGTTCAGCGCCCCTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCa                                                                                                                             >  1:1008849/1‑140 (MQ=255)

          gcaATGACGCGGTTCAGCGCCCCTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAg                                                                                                                            <  2:798159/140‑1 (MQ=255)

               gACGCGGTTCAGCGCCCCTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTg                                                                                                                       >  2:1408220/1‑140 (MQ=255)

               gACGCGGTTCAGCGCCCCTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTg                                                                                                                       >  1:938951/1‑140 (MQ=255)

                  gcgGTTCAGCGCCCCTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCg                                                                                                                    <  1:496109/140‑1 (MQ=255)

                  gcgGTTCAGCGCCCCTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCg                                                                                                                    >  2:1475928/1‑140 (MQ=255)

                   cgGTTCAGCGCCCCTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTg                                                                                                                       >  1:137923/1‑136 (MQ=255)

                   cgGTTCAGCGCCCCTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTg                                                                                                                       <  2:137923/136‑1 (MQ=255)

                   cgGTTCAGCGCCCCTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCgg                                                                                                                   >  1:122487/1‑140 (MQ=255)

                    ggTTCAGCGCCCCTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGt                                                                                                                  <  1:1475928/140‑1 (MQ=255)

                    ggTTCAGCGCCCCTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGt                                                                                                                  >  1:562779/1‑140 (MQ=255)

                    ggTTCAGCGCCCCTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGt                                                                                                                  >  2:2365586/1‑140 (MQ=255)

                      ttCAGCGCCCCTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTc                                                                                                                >  2:619634/1‑140 (MQ=255)

                           cgcCCCTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCg                                                                                                           >  1:236508/1‑140 (MQ=255)

                                cTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGcc                                                                                                         >  1:1592749/1‑137 (MQ=255)

                                cTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGcc                                                                                                         <  2:1592749/137‑1 (MQ=255)

                                cTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCcaca                                                                                                      >  1:1295576/1‑140 (MQ=255)

                                cTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCcaca                                                                                                      >  1:19652/1‑140 (MQ=255)

                                cTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCcaca                                                                                                      >  1:2143743/1‑140 (MQ=255)

                                  tCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCAcagt                                                                                                    <  2:374140/140‑1 (MQ=255)

                                     aGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCAcagtcag                                                                                                 <  1:223996/140‑1 (MQ=255)

                                        tCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGa                                                                                                              >  1:980405/1‑124 (MQ=255)

                                        tCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCAcagtc                                                                                                   >  1:1654345/1‑135 (MQ=255)

                                        tCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCAcagtc                                                                                                   <  2:1654345/135‑1 (MQ=255)

                                                  tAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAg                                                                                    >  1:970672/1‑140 (MQ=255)

                                                     aTCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCgg                                                                                 <  1:1276522/140‑1 (MQ=255)

                                                      tCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCggg                                                                                >  1:1058705/1‑140 (MQ=255)

                                                         tAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGAtt                                                                             >  1:534737/1‑140 (MQ=255)

                                                         tAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGAtt                                                                             >  1:384579/1‑140 (MQ=255)

                                                         tAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGAtt                                                                             >  1:274451/1‑140 (MQ=255)

                                                         tAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGAtt                                                                             >  1:1099486/1‑140 (MQ=255)

                                                         tAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGAtt                                                                             >  2:851332/1‑140 (MQ=255)

                                                          aGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGAttt                                                                            >  2:1963420/1‑140 (MQ=255)

                                                          aGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGAttt                                                                            >  1:1472213/1‑140 (MQ=255)

                                                          aGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGAttt                                                                            <  2:1761374/140‑1 (MQ=255)

                                                          aGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGAttt                                                                            >  1:1771495/1‑140 (MQ=255)

                                                          aGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGAttt                                                                            >  2:2254921/1‑140 (MQ=255)

                                                          aGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGAttt                                                                            >  2:882649/1‑140 (MQ=255)

                                                          aGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGAttt                                                                            >  1:287566/1‑140 (MQ=255)

                                                              gCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCaaa                                                                        <  2:740358/140‑1 (MQ=255)

                                                                ttGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCaaa                                                                        >  1:690520/1‑138 (MQ=255)

                                                                ttGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCaaa                                                                        <  2:690520/138‑1 (MQ=255)

                                                                ttGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACg                                                                      <  2:970672/140‑1 (MQ=255)

                                                                ttGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACg                                                                      >  2:448493/1‑140 (MQ=255)

                                                                   gCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATc                                                                   >  2:1083559/1‑140 (MQ=255)

                                                                    cGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATcc                                                                  >  1:1989753/1‑140 (MQ=255)

                                                                        aaaGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCaa                                                              >  1:577577/1‑140 (MQ=255)

                                                                        aaaGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCaa                                                              >  1:1693300/1‑140 (MQ=255)

                                                                          aGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACg                                                            <  2:2284292/140‑1 (MQ=255)

                                                                          aGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACg                                                            <  1:103627/140‑1 (MQ=255)

                                                                          aGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACg                                                            >  1:636478/1‑140 (MQ=255)

                                                                             aCGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCg                                                         >  2:544750/1‑140 (MQ=255)

                                                                             aCGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCg                                                         <  1:2254921/140‑1 (MQ=255)

                                                                              cGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGt                                                        >  1:887594/1‑140 (MQ=255)

                                                                              cGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGt                                                        >  2:1092075/1‑140 (MQ=255)

                                                                              cGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGt                                                        >  1:1654714/1‑140 (MQ=255)

                                                                              cGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGt                                                        >  1:1845314/1‑140 (MQ=255)

                                                                                ccACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTg                                                      <  2:2147241/140‑1 (MQ=255)

                                                                                ccACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTg                                                      <  2:122487/140‑1 (MQ=255)

                                                                                 cACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGa                                                     >  1:176243/1‑140 (MQ=255)

                                                                                 cACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGa                                                     >  2:1270312/1‑140 (MQ=255)

                                                                                  aCTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGAt                                                    <  2:1873328/140‑1 (MQ=255)

                                                                                  aCTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGAt                                                    <  1:2365586/140‑1 (MQ=255)

                                                                                  aCTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGAt                                                    <  1:1092075/140‑1 (MQ=255)

                                                                                  aCTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGAt                                                    <  2:551170/140‑1 (MQ=255)

                                                                                  aCTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGAt                                                    <  1:1568477/140‑1 (MQ=255)

                                                                                  aCTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGAt                                                    <  2:636478/140‑1 (MQ=255)

                                                                                  aCTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGAt                                                    <  1:619634/140‑1 (MQ=255)

                                                                                   cTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGAtc                                                   >  1:1705968/1‑140 (MQ=255)

                                                                                   cTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGAtc                                                   >  1:2363823/1‑140 (MQ=255)

                                                                                    ttCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGAtct                                                  >  1:712666/1‑140 (MQ=255)

                                                                                       gCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCtt                                               <  2:938951/140‑1 (MQ=255)

                                                                                           ggCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCgg                                           >  1:1586669/1‑140 (MQ=255)

                                                                                            gCAAACGAATGTCGTTTTCGTCGGCCTTTTACATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGa                                          <  2:1484958/140‑1 (MQ=255)

                                                                                             cAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGAt                                         >  2:1212538/1‑140 (MQ=255)

                                                                                              aaaCGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATa                                        <  2:2143743/140‑1 (MQ=255)

                                                                                                     tGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATcc                                 <  1:544750/140‑1 (MQ=255)

                                                                                                      gTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATCCg                                <  2:110591/140‑1 (MQ=255)

                                                                                                        cGTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATCCGAg                              <  2:1693300/140‑1 (MQ=255)

                                                                                                         gTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATCCGAgg                             <  2:97712/140‑1 (MQ=255)

                                                                                                         gTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATCCGAgg                             <  1:882649/140‑1 (MQ=255)

                                                                                                         gTTTTCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATCCGAgg                             <  1:448493/140‑1 (MQ=255)

                                                                                                          ttttCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATCCGAGGt                            <  1:1408220/140‑1 (MQ=255)

                                                                                                           tttCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATCCGAGGTg                           >  1:1840640/1‑140 (MQ=255)

                                                                                                            ttCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATCCGAGGTga                          <  1:150181/140‑1 (MQ=255)

                                                                                                            ttCGTCGGCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATCCGAGGTga                          >  1:1592926/1‑140 (MQ=255)

                                                                                                                  ggCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGAt                                   >  1:814414/1‑125 (MQ=255)

                                                                                                                  ggCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGAt                                   <  2:814414/125‑1 (MQ=255)

                                                                                                                   gCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATCCGAGGTGAGAATGAt                   <  2:2393101/140‑1 (MQ=255)

                                                                                                                   gCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATCCGAGGTGAGAATGAt                   <  2:1692025/140‑1 (MQ=255)

                                                                                                                   gCCTTTTTCATCAGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATCCGAGGTGAGAATGAt                   <  1:505880/140‑1 (MQ=255)

                                                                                                                          tcatcaGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATCCGAGGTGAGAATGATCTGTTGa            <  2:1586669/140‑1 (MQ=255)

                                                                                                                           catcaGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATCCGAGGTGAGAATGATCTGTTGAt           <  1:1223082/140‑1 (MQ=255)

                                                                                                                           catcaGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATCCGAGGTGAGAATGATCTGTTGAt           <  2:1008849/140‑1 (MQ=255)

                                                                                                                           catcaGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATCCGAGGTGAGAATGATCTGTTGAt           <  2:176243/140‑1 (MQ=255)

                                                                                                                              caGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATCCGCGGTGAGAATGATCTGTTGATTAc        >  2:483885/1‑140 (MQ=255)

                                                                                                                              caGGATCGCCGCACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATCCGAGGTGAGAATGATCTGTTGATTAc        >  1:2076943/1‑140 (MQ=255)

GTTGGCATTGGCAATGACGCGGTTCAGCGCCCCTTCCAGCTCACGTACGTTAGATCGTAGACGCTTGGCGATAAAGAACGCCACTTCGCCCGGCAAACGAATGTCGTTTTCGTCGGCCTTTTTCATCAGGATCGCCACACGGGTTTCCAGCTCTGGCGGTTCGATCGCCACAGTCAGTCCCCAACCGAAGCGGGATTTCAAACGATCCTCAACGCCGTTGATCTCTTTCGGATAGCGATCCGAGGTGAGAATGATCTGTTGATTACCTTCCA  >  NC_000913/3882686‑3882957

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A