Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	159	82.1	2830106	99.3%	2810295	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,893,082	G→A	P106P (CCG→CCA)	yidZ →	putative LysR‑type transcriptional regulator YidZ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,893,082	0	G	A	100.0%	292.3 / NA	82	P106P (CCG→CCA)	yidZ	putative LysR‑type transcriptional regulator YidZ
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (40/42); total (40/42)

GGTCTGTCGCCCACACCGCTGATGGTCAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCGCTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGATGCCATTACTCGTGGTGAAGTGGATATC  >  NC_000913/3892945‑3893208

ggTCTGTCGCCCACACCGCTGATGGTCAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACt                                                                                                                              >  2:471306/1‑140 (MQ=255)

ggTCTGTCGCCCACACCGCTGATGGTCAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACt                                                                                                                              <  1:261414/140‑1 (MQ=255)

   cTGTCGCCCACACCGCTGATGGTCAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACtgat                                                                                                                           <  2:128708/140‑1 (MQ=255)

    tGTCGCCCACACCGCTGATGGTCAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACtgatg                                                                                                                          <  1:32807/140‑1 (MQ=255)

    tGTCGCCCACACCGCTGATGGTCAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACtgatg                                                                                                                          <  2:1181298/140‑1 (MQ=255)

     gTCGCCCACACCGCTGATGGTCAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACtgatga                                                                                                                         <  1:14013/140‑1 (MQ=255)

     gTCGCCCACACCGCTGATGGTCAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACtgatga                                                                                                                         <  2:1359408/140‑1 (MQ=255)

          ccACACCGCTGATGGTCAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATc                                                                                                                    <  1:935966/140‑1 (MQ=255)

           cacaCCGCTGATGGTCAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGTTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCa                                                                                                                   <  1:1176781/140‑1 (MQ=255)

            acacCGCTGATGGTCAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATc                                                                                                                    >  2:911108/1‑138 (MQ=255)

            acacCGCTGATGGTCAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATc                                                                                                                    <  1:911108/138‑1 (MQ=255)

            acacCGCTGATGGTCAGCATGGAGCAAAATCTGGCAGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCAt                                                                                                                  <  1:1304420/140‑1 (MQ=255)

                  cTGATGGTCAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTaa                                                                                                            >  2:304052/1‑140 (MQ=255)

                  cTGATGGTCAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTaa                                                                                                            >  1:294788/1‑140 (MQ=255)

                      tGGTCAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATgcg                                                                                                        <  2:943109/140‑1 (MQ=255)

                       ggTCAGCATGGAGGAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATgcgc                                                                                                       <  1:455286/140‑1 (MQ=255)

                       ggTCAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATgcgc                                                                                                       <  2:278960/140‑1 (MQ=255)

                        gTCAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTgatgatgat                                                                                                                     >  2:298116/1‑125 (MQ=255)

                        gTCAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTgatgatgat                                                                                                                     <  1:298116/125‑1 (MQ=255)

                          cAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGt                                                                                                    >  2:779910/1‑140 (MQ=255)

                          cAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGt                                                                                                    <  2:1160151/140‑1 (MQ=255)

                             cATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGa                                                                                                 <  1:779910/140‑1 (MQ=255)

                              aTGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGaa                                                                                                <  2:301421/140‑1 (MQ=255)

                               tGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGaaa                                                                                               <  2:980246/140‑1 (MQ=255)

                               tGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGaaa                                                                                               >  2:1354108/1‑140 (MQ=255)

                                ggAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAAc                                                                                              >  1:276849/1‑140 (MQ=255)

                                  aGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATgc                                                                                                         <  1:1013900/127‑1 (MQ=255)

                                  aGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATgc                                                                                                         >  2:1013900/1‑127 (MQ=255)

                                  aGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAg                                                                                            >  1:554815/1‑140 (MQ=255)

                                  aGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAg                                                                                            >  1:392014/1‑140 (MQ=255)

                                  aGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAg                                                                                            <  1:768945/140‑1 (MQ=255)

                                  aGCAAAAACTGGCGGAAAGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGGGTGAAGTTTCAGCTGGCGGCGGATTCACCACTGATGATTATCATGCTTAATGCGCTGTCGAAACAg                                                                                            >  2:144988/1‑140 (MQ=255)

                                   gCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGa                                                                                           >  2:760689/1‑140 (MQ=255)

                                       aaTCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTa                                                                                       >  2:1088323/1‑140 (MQ=255)

                                        aTCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTAc                                                                                      <  2:554815/140‑1 (MQ=255)

                                               ggAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGtt                                                                               <  1:1294234/140‑1 (MQ=255)

                                                         cAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGc                                                                     <  2:1387656/140‑1 (MQ=255)

                                                          aaaTGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCg                                                                    <  1:471306/140‑1 (MQ=255)

                                                              gAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCa                                                                <  2:276849/140‑1 (MQ=255)

                                                               aGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCAt                                                               >  2:1063543/1‑140 (MQ=255)

                                                                 cAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCa                                                             >  1:246799/1‑140 (MQ=255)

                                                                 cAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCa                                                             <  2:798623/140‑1 (MQ=255)

                                                                 cAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCa                                                             <  1:681661/140‑1 (MQ=255)

                                                                  aaCCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCaa                                                            <  1:35475/140‑1 (MQ=255)

                                                                    ccTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAAt                                                          >  1:1389619/1‑140 (MQ=255)

                                                                    ccTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAAt                                                          >  2:504933/1‑140 (MQ=255)

                                                                      tgctgctgGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTa                                                        >  2:473327/1‑140 (MQ=255)

                                                                      tgctgctgGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTa                                                        <  2:62983/140‑1 (MQ=255)

                                                                        ctgctgGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACg                                                      >  2:491695/1‑140 (MQ=255)

                                                                             ggATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACt                                                 >  1:1375520/1‑140 (MQ=255)

                                                                                tAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTggg                                              >  1:1022584/1‑140 (MQ=255)

                                                                                   aCCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGAtt                                           >  1:543358/1‑140 (MQ=255)

                                                                                     cGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTAc                                         <  2:869787/140‑1 (MQ=255)

                                                                                        accaccAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTggg                                              <  2:559847/132‑1 (MQ=255)

                                                                                        accaccAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTggg                                              >  1:559847/1‑132 (MQ=255)

                                                                                        accaccAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGAt                                      >  2:1368379/1‑140 (MQ=255)

                                                                                        accaccAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGAt                                      <  1:473327/140‑1 (MQ=255)

                                                                                        accaccAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGAt                                      >  2:427432/1‑140 (MQ=255)

                                                                                              aGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTa                                <  1:1368379/140‑1 (MQ=255)

                                                                                                acacCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGa                              <  2:543358/140‑1 (MQ=255)

                                                                                                 cacCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGAt                             <  1:1088323/140‑1 (MQ=255)

                                                                                                  acCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGATg                            >  1:1306759/1‑140 (MQ=255)

                                                                                                    cgcgcgGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGa                              <  1:1334341/136‑1 (MQ=255)

                                                                                                    cgcgcgGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGa                              >  2:1334341/1‑136 (MQ=255)

                                                                                                    cgcgcgGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGATGcc                          >  1:13366/1‑140 (MQ=255)

                                                                                                      cgcgGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGa                              <  1:645931/134‑1 (MQ=255)

                                                                                                      cgcgGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGa                              >  2:645931/1‑134 (MQ=255)

                                                                                                      cgcgGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGATGCCAt                        >  2:653189/1‑140 (MQ=255)

                                                                                                      cgcgGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGATGCCAt                        >  1:92352/1‑140 (MQ=255)

                                                                                                      cgcgGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGATGCCAt                        >  2:800500/1‑140 (MQ=255)

                                                                                                      cgcgGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGATGCCAt                        >  1:1275864/1‑140 (MQ=255)

                                                                                                      cgcgGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGATGCCAt                        >  1:1186408/1‑140 (MQ=255)

                                                                                                      cgcgGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGACTCCTTAGATGCCAt                        >  1:1398194/1‑140 (MQ=255)

                                                                                                       gcgGCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGATGCCAtt                       >  2:982477/1‑140 (MQ=255)

                                                                                                         ggCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGATGCCATTAc                     <  2:110474/140‑1 (MQ=255)

                                                                                                         ggCCTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGATGCCATTAc                     <  2:246799/140‑1 (MQ=255)

                                                                                                           ccTGAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGATGCCATTACTc                   >  1:93860/1‑140 (MQ=255)

                                                                                                              gAAGTTTGAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAGATTACGTAACTGGGATTACGATTCCTTAGATGCCATTACTCgtg                <  2:392014/140‑1 (MQ=255)

                                                                                                                     gAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGATGCCATTAc                     >  1:130743/1‑128 (MQ=255)

                                                                                                                     gAGCTGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGATGCCATTAc                     <  2:130743/128‑1 (MQ=255)

                                                                                                                         tGGCGGCGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGATGCCATTACTCGTGGTGAAGTGGat     <  2:1306759/140‑1 (MQ=255)

                                                                                                                          ggcggcGGAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGATGCCATTACTCGTGGTGAAGTGGata    >  2:384460/1‑140 (MQ=255)

                                                                                                                            cggcggAATCACCACTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGATGCCATTACTCGTGGTGAAGTGGATATc  >  1:222179/1‑140 (MQ=255)

GGTCTGTCGCCCACACCGCTGATGGTCAGCATGGAGCAAAATCTGGCGGAGTGGATGCAAATGAGCAACCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGCTGGCGGCGGAATCACCGCTGATGATGATCATGCTTAATGCGCTGTCGAAACAGATCTACCAACGTTACCCGCAGGCGACCATCAAATTACGTAACTGGGATTACGATTCCTTAGATGCCATTACTCGTGGTGAAGTGGATATC  >  NC_000913/3892945‑3893208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A