Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,905,125	A→G	I158T (ATC→ACC)	bglF ←	beta‑glucoside specific PTS enzyme II/BglG kinase/BglG phosphatase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,905,125	0	A	G	100.0%	431.1 / NA	119	I158T (ATC→ACC)	bglF	beta‑glucoside specific PTS enzyme II/BglG kinase/BglG phosphatase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (56/63); total (56/63)

Only 100 of 120 total aligned reads displayed.

GAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATACCTTTCAAGATCCCGGTTGCCGCCATCAAA  >  NC_000913/3904989‑3905259

gAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTa                                                                                                                                     >  1:904405/1‑140 (MQ=255)

gAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTa                                                                                                                                     <  2:1467732/140‑1 (MQ=255)

gAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTa                                                                                                                                     <  2:412113/140‑1 (MQ=255)

 aaaTCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTAt                                                                                                                                    >  2:982267/1‑140 (MQ=255)

 aaaTCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTAt                                                                                                                                    >  2:1917564/1‑140 (MQ=255)

   aTCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCg                                                                                                                                  >  1:2332428/1‑140 (MQ=255)

     ccAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCggg                                                                                                                                <  2:1634631/140‑1 (MQ=255)

      cAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGga                                                                                                                               <  1:662620/140‑1 (MQ=255)

      cAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGga                                                                                                                               <  1:1917564/140‑1 (MQ=255)

      cAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGga                                                                                                                               >  2:1015983/1‑140 (MQ=255)

          cccAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGgaagaa                                                                                                                           >  1:86478/1‑140 (MQ=255)

                   tCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACaa                                                                                                                  <  2:334201/140‑1 (MQ=255)

                      gCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGc                                                                                                               <  1:2127663/140‑1 (MQ=255)

                       cTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACa                                                                                                                   <  1:918018/135‑1 (MQ=255)

                       cTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACa                                                                                                                   >  2:918018/1‑135 (MQ=255)

                       cTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCa                                                                                                              >  1:568461/1‑140 (MQ=255)

                            tGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACt                                                                                                         <  1:2015988/140‑1 (MQ=255)

                                cGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCGCCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGgcg                                                                                                     <  2:1688428/140‑1 (MQ=255)

                                cGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGgcg                                                                                                     <  1:982267/140‑1 (MQ=255)

                                 gTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGgcgc                                                                                                    >  1:15769/1‑140 (MQ=255)

                                  ttCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAAc                                                                                                                    <  1:87009/123‑1 (MQ=255)

                                  ttCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCt                                                                                                   >  1:1628437/1‑140 (MQ=255)

                                      cGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAAt                                                                                               <  2:904405/140‑1 (MQ=255)

                                       gAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATa                                                                                              <  2:777539/140‑1 (MQ=255)

                                           gCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAt                                                                                          <  1:261796/140‑1 (MQ=255)

                                           gCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAt                                                                                          <  2:1117382/140‑1 (MQ=255)

                                            cAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAAtt                                                                                         >  1:1166266/1‑140 (MQ=255)

                                             aGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTa                                                                                        >  2:340616/1‑140 (MQ=255)

                                              gTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTaa                                                                                       <  1:1271787/140‑1 (MQ=255)

                                              gTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTaa                                                                                       <  1:1265440/140‑1 (MQ=255)

                                              gTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTaa                                                                                       <  2:568461/140‑1 (MQ=255)

                                               tCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGACGCTGAATAAAATTaaa                                                                                      >  2:1126551/1‑140 (MQ=255)

                                                      tAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTAc                                                                               >  1:575022/1‑140 (MQ=255)

                                                       aaTGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTAcc                                                                              >  1:147881/1‑140 (MQ=255)

                                                        aTGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCa                                                                             <  2:1087155/140‑1 (MQ=255)

                                                        aTGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCa                                                                             >  1:856003/1‑140 (MQ=255)

                                                         tGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCAc                                                                            >  2:1577609/1‑140 (MQ=255)

                                                          ggATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACt                                                                           <  2:666043/140‑1 (MQ=255)

                                                             tGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAAt                                                                                     >  2:2301115/1‑127 (MQ=255)

                                                             tGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAAt                                                                                     <  1:2301115/127‑1 (MQ=255)

                                                             tGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAg                                                                                  <  2:1850638/130‑1 (MQ=255)

                                                             tGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTg                                                                        >  1:1807735/1‑140 (MQ=255)

                                                                aCTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCa                                                                             <  1:649458/132‑1 (MQ=255)

                                                                aCTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCa                                                                             >  2:649458/1‑132 (MQ=255)

                                                                    aCGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGgtc                                                                 <  2:86478/140‑1 (MQ=255)

                                                                      gCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTa                                                                                <  1:799447/123‑1 (MQ=255)

                                                                      gCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGCTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTa                                                                                >  2:799447/1‑123 (MQ=255)

                                                                       cTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGgtcgtc                                                              >  2:1699344/1‑140 (MQ=255)

                                                                         ccaccaATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCa                                                            >  2:618382/1‑140 (MQ=255)

                                                                          caccaATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCAc                                                           >  2:2098259/1‑140 (MQ=255)

                                                                          caccaATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCAc                                                           >  1:38855/1‑140 (MQ=255)

                                                                          caccaATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCAc                                                           >  2:270264/1‑140 (MQ=255)

                                                                          caccaATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCAc                                                           >  2:1689209/1‑140 (MQ=255)

                                                                              aaTCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGaa                                                       <  1:983702/140‑1 (MQ=255)

                                                                                tCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGaaaa                                                     <  1:1680301/140‑1 (MQ=255)

                                                                                tCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGaaaa                                                     <  1:270264/140‑1 (MQ=255)

                                                                                  aCCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGgtc                                                                 >  1:1222225/1‑126 (MQ=255)

                                                                                  aCCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGgtc                                                                 <  2:1222225/126‑1 (MQ=255)

                                                                                  aCCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGt                                                   <  1:1689209/140‑1 (MQ=255)

                                                                                  aCCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGt                                                   <  2:2262231/140‑1 (MQ=255)

                                                                                  aCCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGt                                                   >  1:1212233/1‑140 (MQ=255)

                                                                                    cATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGa                                                 >  2:1986856/1‑140 (MQ=255)

                                                                                      tGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAgc                                               >  1:1709438/1‑140 (MQ=255)

                                                                                       ggCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAgcg                                              >  1:1089573/1‑140 (MQ=255)

                                                                                       ggCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAgcg                                              >  2:907112/1‑140 (MQ=255)

                                                                                         cAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGcc                                            <  2:1807735/140‑1 (MQ=255)

                                                                                           gTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCag                                          <  2:1999871/140‑1 (MQ=255)

                                                                                            tAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCaga                                         >  1:194110/1‑140 (MQ=255)

                                                                                            tAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCaga                                         >  1:1098676/1‑140 (MQ=255)

                                                                                              aaTGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGc                                       >  1:390515/1‑140 (MQ=255)

                                                                                              aaTGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGc                                       <  2:1089573/140‑1 (MQ=255)

                                                                                                  gATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGATCGTCCACTGAAAAGTGAGCGCCAGAGCCAGc                                   >  2:1568094/1‑140 (MQ=255)

                                                                                                   aTTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCa                                  <  1:2171390/140‑1 (MQ=255)

                                                                                                   aTTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCa                                  <  2:194110/140‑1 (MQ=255)

                                                                                                   aTTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCa                                  <  1:1015983/140‑1 (MQ=255)

                                                                                                   aTTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCa                                  >  1:2268176/1‑140 (MQ=255)

                                                                                                   aTTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCa                                  >  1:1362439/1‑140 (MQ=255)

                                                                                                   aTTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCa                                  <  1:1577609/140‑1 (MQ=255)

                                                                                                      aCCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCaga                                         <  1:56456/130‑1 (MQ=255)

                                                                                                      aCCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCaga                                         >  2:56456/1‑130 (MQ=255)

                                                                                                      aCCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATa                                <  2:2082102/139‑1 (MQ=255)

                                                                                                      aCCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATa                                >  1:1858666/1‑139 (MQ=255)

                                                                                                        cgccgAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATACCt                             >  2:167935/1‑140 (MQ=255)

                                                                                                         gccgAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATACCtt                            <  1:971566/140‑1 (MQ=255)

                                                                                                          ccgAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATACCttt                           <  2:2262794/140‑1 (MQ=255)

                                                                                                            gAAGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATACCTTTCa                         >  2:900435/1‑140 (MQ=255)

                                                                                                             aaGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACGACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATACCTTTCaa                        >  2:1132265/1‑140 (MQ=255)

                                                                                                             aaGCGTTTCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCa                                  <  2:2353778/130‑1 (MQ=255)

                                                                                                                  tttCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATACCTTTCAAGATcc                   >  2:725121/1‑140 (MQ=255)

                                                                                                                    tCCCCGCGGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATACCTTTCAAGATCCCg                 >  1:1740199/1‑140 (MQ=255)

                                                                                                                         gcgGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATACCTTTCAAGATCCCGGTTgc            <  2:1212233/140‑1 (MQ=255)

                                                                                                                         gcgGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATACCTTTCAAGATCCCGGTTgc            <  2:1454657/140‑1 (MQ=255)

                                                                                                                         gcgGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATACCTTTCAAGATCCCGGTTgc            <  2:856003/140‑1 (MQ=255)

                                                                                                                          cgGTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATACCTTTCAAGATCCCGGTTgcc           <  1:1081922/140‑1 (MQ=255)

                                                                                                                           ggTGTATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATACCTTTCAAGATCCCGGTTgccg          <  1:1900583/140‑1 (MQ=255)

                                                                                                                             tgtATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATACCTTTCAAGATCCCGGTTgccgcc        >  1:301082/1‑140 (MQ=255)

                                                                                                                             tgtATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTA‑CACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATACCTTTCAAGATCCCGGTTGCCGCCa       >  2:1933377/1‑140 (MQ=255)

                                                                                                                              gtATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATACCTTTCAAGATCCCGGTTGCCGCCa       <  1:1477508/140‑1 (MQ=255)

                                                                                                                              gtATCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATACCTTTCAAGATCCCGGTTGCCGCCa       <  2:1609483/140‑1 (MQ=255)

                                                                                                                                aTCCCAGGGTTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATACCTTTCAAGATCCCGGTTGCCGCCATc     <  2:1362439/140‑1 (MQ=255)

GAAATCCAGCCCCAGCGCATCCGCTTTTTGCCCGTTCTCGAAAGCAGTCAGAATTAATGGATGCACTAACGCTCCACCAATCACCATGGCAGTAAATGGATTACCGCCGAAGCGTTTCCCCGCGGTGTATCCCAGGATTATCGGGAAGAACCAAAACAAGGCATCACTGGCGCTGAATAAAATTAAATAAGTACCACTTTGTTCGGTCGTCCACTGAAAAGTGAGCGCCAGAGCCAGCATACCTTTCAAGATCCCGGTTGCCGCCATCAAA  >  NC_000913/3904989‑3905259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A