Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,911,408	C→G	V40L (GTG→CTG)	pstS ←	phosphate ABC transporter periplasmic binding protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,911,408	0	C	G	100.0%	498.6 / NA	137	V40L (GTG→CTG)	pstS	phosphate ABC transporter periplasmic binding protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (78/59); total (78/59)

Only 100 of 138 total aligned reads displayed.

GACAGCGGCGCGTCAGAGGCACC‑AAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGTCTCCTGGGAGGA  >  NC_000913/3911272‑3911542

gACAGCGGCGCGTCAGAGGCACC‑AAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCgg                                                                                                                                     >  1:911170/1‑140 (MQ=255)

   aGCGGCGCGTCAGAGGCACC‑AAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGgcgc                                                                                                                                  <  1:1203088/140‑1 (MQ=255)

     cggcgCGTCAGAGGCACC‑AAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAg                                                                                                                                >  2:88398/1‑140 (MQ=255)

     cggcgCGTCAGAGGCACC‑AAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAg                                                                                                                                >  1:176110/1‑140 (MQ=255)

       gcgcGTCAGAGGCACC‑AAAATCAACGGTATTAGCGATAATCTGTTTTACGCCTCCGGAAGAACCGATACCCTGGTAGTTAACTTTATTGCCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAggg                                                                                                                              <  2:751611/140‑1 (MQ=255)

       gcgcGTCAGAGGCACC‑AAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAggg                                                                                                                              <  2:783013/140‑1 (MQ=255)

       gcgcGTCAGAGGCACC‑AAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAggg                                                                                                                              <  2:253141/140‑1 (MQ=255)

       gcgcGTCAGAGGCACC‑AAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAggg                                                                                                                              <  2:1698963/140‑1 (MQ=255)

       gcgcGTCAGAGGCACC‑AAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTCGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAggg                                                                                                                              <  2:2189875/140‑1 (MQ=255)

        cgcgTCAGAGGCACCAAAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAggg                                                                                                                              <  1:833937/140‑1 (MQ=255)

         gcgTCAGAGGCACC‑AAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGaa                                                                                                                            <  1:1052479/140‑1 (MQ=255)

                 ggCACC‑AAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTtgcac                                                                                                                    <  1:166547/140‑1 (MQ=255)

                     cc‑AAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTtgcacctgc                                                                                                                >  2:78695/1‑140 (MQ=255)

                     cc‑AAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTtgcacctgc                                                                                                                >  2:1755032/1‑140 (MQ=255)

                     cc‑AAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTtgcacctgc                                                                                                                <  2:1558894/140‑1 (MQ=255)

                      c‑AAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTtgcacctgca                                                                                                               <  2:911170/140‑1 (MQ=255)

                      c‑AAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTtgcacctgca                                                                                                               <  1:155203/140‑1 (MQ=255)

                         aaaTCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTtgcacctgcacc                                                                                                             <  2:482209/140‑1 (MQ=255)

                             cAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTc                                                                                                         >  2:1258543/1‑140 (MQ=255)

                               aCGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAg                                                                                                       >  1:1625070/1‑140 (MQ=255)

                                      tAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGgcttgct                                                                                                <  2:1987742/140‑1 (MQ=255)

                                        gCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTc                                                                                              >  2:647042/1‑140 (MQ=255)

                                             aaTCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGgcttgct                                                                                                <  1:610030/133‑1 (MQ=255)

                                             aaTCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCaa                                                                                         >  1:2184992/1‑140 (MQ=255)

                                             aaTCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCaa                                                                                         >  2:1638256/1‑140 (MQ=255)

                                                 tGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAacac                                                                                     >  2:1455170/1‑140 (MQ=255)

                                                  gTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAAcaca                                                                                    >  1:1045770/1‑140 (MQ=255)

                                                   ttttACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACag                                                                                   >  1:208914/1‑140 (MQ=255)

                                                    tttACGCCACCGGTAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACaga                                                                                  >  2:774546/1‑140 (MQ=255)

                                                    tttACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACaga                                                                                  >  1:2065811/1‑140 (MQ=255)

                                                      tACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAgaga                                                                                >  1:2028573/1‑140 (MQ=255)

                                                         gCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAg                                                                             <  1:1455170/140‑1 (MQ=255)

                                                           cACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCa                                                                           >  1:1866430/1‑140 (MQ=255)

                                                            aCCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCAc                                                                          <  1:481097/140‑1 (MQ=255)

                                                             ccGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAacac                                                                                     <  1:1071797/128‑1 (MQ=255)

                                                             ccGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAacac                                                                                     >  2:1071797/1‑128 (MQ=255)

                                                             ccGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACt                                                                         >  2:1970977/1‑140 (MQ=255)

                                                             ccGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACt                                                                         >  1:126998/1‑140 (MQ=255)

                                                              cGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTc                                                                        <  1:88398/140‑1 (MQ=255)

                                                                     aCCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATa                                                                 >  1:1651594/1‑140 (MQ=255)

                                                                       cGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCGCt                                                                         <  2:711962/130‑1 (MQ=255)

                                                                       cGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACt                                                                         >  1:711962/1‑130 (MQ=255)

                                                                        gATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCa                                                                           >  2:794246/1‑127 (MQ=255)

                                                                        gATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCa                                                                           <  1:794246/127‑1 (MQ=255)

                                                                        gATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGAGAAgg                                                              >  2:2215633/1‑140 (MQ=255)

                                                                          tACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATa                                                                 <  2:205100/135‑1 (MQ=255)

                                                                          tACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTc                                                            <  1:78695/140‑1 (MQ=255)

                                                                          tACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTc                                                            <  1:2400814/140‑1 (MQ=255)

                                                                            cccTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTcgc                                                          <  2:573740/140‑1 (MQ=255)

                                                                              cTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCgcgg                                                        >  1:2402007/1‑140 (MQ=255)

                                                                               tGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTc                                                                        >  2:1566776/1‑123 (MQ=255)

                                                                                 gTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGa                                                     >  2:722781/1‑140 (MQ=255)

                                                                                 gTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGa                                                     >  1:652659/1‑140 (MQ=255)

                                                                                 gTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGa                                                     >  2:1207055/1‑140 (MQ=255)

                                                                                  tAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGac                                                    <  2:460931/140‑1 (MQ=255)

                                                                                       aaCTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTcgc                                                          <  2:2095956/129‑1 (MQ=255)

                                                                                       aaCTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAg                                               >  1:265181/1‑140 (MQ=255)

                                                                                       aaCTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAg                                               >  1:260462/1‑140 (MQ=255)

                                                                                       aaCTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGACGACAACAg                                               >  1:228627/1‑140 (MQ=255)

                                                                                           ttattaCCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGc                                           >  2:479413/1‑140 (MQ=255)

                                                                                           ttattaCCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGc                                           >  1:941869/1‑140 (MQ=255)

                                                                                           ttattaCCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGc                                           >  2:1726526/1‑140 (MQ=255)

                                                                                            tattaCCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCg                                          >  2:1343524/1‑140 (MQ=255)

                                                                                              ttaCCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTg                                            >  2:139185/1‑136 (MQ=255)

                                                                                              ttaCCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTg                                            <  1:139185/136‑1 (MQ=255)

                                                                                              ttaCCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGAc                                        >  2:1046767/1‑140 (MQ=255)

                                                                                                    gTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACggtggt                                  <  2:670797/140‑1 (MQ=255)

                                                                                                         tttctGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCa                             <  2:1045770/140‑1 (MQ=255)

                                                                                                          ttctGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCAt                            <  1:1580086/140‑1 (MQ=255)

                                                                                                            ctGGTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATaa                          <  2:1759876/140‑1 (MQ=255)

                                                                                                               gTAAGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACtt                       >  1:667192/1‑140 (MQ=255)

                                                                                                                 aaGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTc                     <  1:294187/140‑1 (MQ=255)

                                                                                                                  aGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATaa                          >  2:1286405/1‑134 (MQ=255)

                                                                                                                  aGTGTCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATaa                          <  1:1286405/134‑1 (MQ=255)

                                                                                                                      tCAGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAAt                <  1:1755032/140‑1 (MQ=255)

                                                                                                                        aGCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGt              >  2:637406/1‑140 (MQ=255)

                                                                                                                         gCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTTAt                   >  1:1817935/1‑134 (MQ=255)

                                                                                                                         gCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGtc             >  2:1961781/1‑140 (MQ=255)

                                                                                                                         gCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGtc             >  1:115817/1‑140 (MQ=255)

                                                                                                                         gCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGtc             >  1:666563/1‑140 (MQ=255)

                                                                                                                         gCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGtc             >  1:1584309/1‑140 (MQ=255)

                                                                                                                         gCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGt              >  1:638276/1‑139 (MQ=255)

                                                                                                                         gCCCATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGt              <  2:638276/139‑1 (MQ=255)

                                                                                                                          cccATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACGCAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGt              >  1:2107230/1‑138 (MQ=255)

                                                                                                                          cccATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGtct            >  1:589491/1‑140 (MQ=255)

                                                                                                                          cccATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGt              <  2:2107230/138‑1 (MQ=255)

                                                                                                                            cATTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGTCTcc          <  2:1866430/140‑1 (MQ=255)

                                                                                                                             aTTTGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGTCTCCt         >  2:2364428/1‑140 (MQ=255)

                                                                                                                              tttGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACttt                      >  1:2396780/1‑126 (MQ=255)

                                                                                                                              tttGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACttt                      <  2:2396780/126‑1 (MQ=255)

                                                                                                                              tttGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGTCTCCTg        >  2:1416543/1‑140 (MQ=255)

                                                                                                                              tttGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGTCTCCTg        >  1:1946695/1‑140 (MQ=255)

                                                                                                                              tttGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGTCTCCTg        >  2:2125818/1‑140 (MQ=255)

                                                                                                                              tttGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGGCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGTCTCCTg        >  1:484880/1‑140 (MQ=255)

                                                                                                                              tttGGCATACAGCGGCGCAGGGAAGGATGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTc                     >  1:2289786/1‑127 (MQ=255)

                                                                                                                              tttGGCATACAGCGGCGCAGGGAAGGATGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTc                     <  2:2289786/127‑1 (MQ=255)

                                                                                                                                tGGCATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGTCTCCTggg      <  1:2160350/140‑1 (MQ=255)

                                                                                                                                   cATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGTCTCCTGggagg   <  2:176110/140‑1 (MQ=255)

                                                                                                                                   cATACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGTCTCCTGggagg   <  1:722781/140‑1 (MQ=255)

                                                                                                                                    aTACAGCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGTCTCCTGggagga  >  1:1164060/1‑140 (MQ=255)

GACAGCGGCGCGTCAGAGGCACC‑AAAATCAACGGTATTAGCGATAATCTGTTTTACGCCACCGGAAGAACCGATACCCTGGTAGTTAACTTTATTACCGGTTTCTTTCTGGTAAGTGTCAGCCCATTTGGCATACACCGGCGCAGGGAAGGTTGCACCTGCACCTGTCAGGCTTGCTTCTGCAAACACAGAGAAAGCACTCATCGATAAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGTCTCCTGGGAGGA  >  NC_000913/3911272‑3911542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A