Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,955,352	T→C	S8P (TCC→CCC)	ilvA →	threonine deaminase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,955,352	0	T	C	100.0%	306.0 / NA	86	S8P (TCC→CCC)	ilvA	threonine deaminase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (41/45); total (41/45)

GGACGCCGAAAAATCGTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGTCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCG  >  NC_000913/3955216‑3955485

ggACGCCGAAAAATCGTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCg                                                                                                                                    <  1:1667631/140‑1 (MQ=255)

 gACGCCGAAAAATCGTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCg                                                                                                                                    >  2:1187714/1‑139 (MQ=255)

 gACGCCGAAAAATCGTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCg                                                                                                                                    <  1:1187714/139‑1 (MQ=255)

  aCGCCGAAAAATCGTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGTGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGt                                                                                                                                  <  1:1885937/140‑1 (MQ=255)

  aCGCCGAAAAATCGTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGt                                                                                                                                  <  2:574980/140‑1 (MQ=255)

   cGCCGAAAAATCGTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTg                                                                                                                                 <  1:398520/140‑1 (MQ=255)

     ccGAAAAATCGTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCt                                                                                                                               <  1:2367544/140‑1 (MQ=255)

      cGAAAAATCGTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCg                                                                                                                                    >  2:240557/1‑134 (MQ=255)

      cGAAAAATCGTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCg                                                                                                                                    <  1:240557/134‑1 (MQ=255)

      cGAAAAATCGTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTg                                                                                                                                 <  1:1175384/137‑1 (MQ=255)

      cGAAAAATCGTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTg                                                                                                                                 >  2:1175384/1‑137 (MQ=255)

      cGAAAAATCGTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTc                                                                                                                              >  2:1771509/1‑140 (MQ=255)

      cGAAAAATCGTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTc                                                                                                                              >  1:340237/1‑140 (MQ=255)

      cGAAAAATCGTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTc                                                                                                                              >  2:1786820/1‑140 (MQ=255)

       gAAAAATCGTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTcc                                                                                                                             >  2:2078088/1‑140 (MQ=255)

         aaaaTCGTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCgg                                                                                                                           <  2:121356/140‑1 (MQ=255)

             tCGTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAgg                                                                                                                       <  1:1291319/140‑1 (MQ=255)

             tCGTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAgg                                                                                                                       <  1:431102/140‑1 (MQ=255)

               gTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTg                                                                                                                     <  2:340237/140‑1 (MQ=255)

                 gAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGcc                                                                                                                   <  2:1626755/140‑1 (MQ=255)

                 gAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGcc                                                                                                                   <  1:205212/140‑1 (MQ=255)

                  aaCGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCg                                                                                                                  >  1:968088/1‑140 (MQ=255)

                       cAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAg                                                                                                                        <  1:1910595/129‑1 (MQ=255)

                       cAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAg                                                                                                                        >  2:1910595/1‑129 (MQ=255)

                         ggTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATAttt                                                                                                           <  1:1938524/140‑1 (MQ=255)

                         ggTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATAttt                                                                                                           <  1:2381291/140‑1 (MQ=255)

                              ccTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAagag                                                                                                      <  1:1786820/140‑1 (MQ=255)

                               cTTTGTCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGc                                                                                                     <  2:169985/140‑1 (MQ=255)

                                 ttGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAg                                                                                                   >  1:61321/1‑140 (MQ=255)

                                 ttGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAg                                                                                                   >  1:198788/1‑140 (MQ=255)

                                    cccTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGtgc                                                                                                >  1:179068/1‑140 (MQ=255)

                                       tGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGtgctgc                                                                                             >  2:609339/1‑140 (MQ=255)

                                       tGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGAGCCGAATATTTAAGAGCAGtgctgc                                                                                             >  2:1297930/1‑140 (MQ=255)

                                         cGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTgcgc                                                                                           >  2:783935/1‑140 (MQ=255)

                                         cGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTgcgc                                                                                           >  2:884621/1‑140 (MQ=255)

                                              ttATGCCAGCCTGGCAACCAGCGCCGGCAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGcc                                                                                      <  2:2219245/140‑1 (MQ=255)

                                              ttATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGT‑‑GCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCgg                                                                                    <  1:1523159/140‑1 (MQ=255)

                                               tATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCg                                                                                     <  2:386074/140‑1 (MQ=255)

                                                    cAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTa                                                                                <  2:914503/140‑1 (MQ=255)

                                                      gCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACg                                                                              >  2:1088967/1‑140 (MQ=255)

                                                       ccTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTa                                                                                >  2:216495/1‑137 (MQ=255)

                                                       ccTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTa                                                                                <  1:216495/137‑1 (MQ=255)

                                                       ccTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGa                                                                             >  2:206894/1‑140 (MQ=255)

                                                        cTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAg                                                                            >  1:1102628/1‑140 (MQ=255)

                                                         tGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAgg                                                                           <  1:609339/140‑1 (MQ=255)

                                                           gCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAggcg                                                                         >  1:833070/1‑140 (MQ=255)

                                                             aaCCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAggcggc                                                                       <  1:1609619/140‑1 (MQ=255)

                                                              aCCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGgcggcg                                                                      <  2:1674332/140‑1 (MQ=255)

                                                              aCCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGgcggcg                                                                      <  2:905250/140‑1 (MQ=255)

                                                                    gcCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGtt                                                                >  2:1771316/1‑140 (MQ=255)

                                                                         cAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTAcgcc                                                           <  2:1102628/140‑1 (MQ=255)

                                                                               cgcgGTGCGCGATAAATCGAAACTGGGGTGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACa                                                     >  2:1183169/1‑140 (MQ=255)

                                                                                    tGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACaaaaaa                                                >  2:1001132/1‑140 (MQ=255)

                                                                                    tGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACaaaaaa                                                >  1:641063/1‑140 (MQ=255)

                                                                                    tGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACaaaaaa                                                <  1:1944823/140‑1 (MQ=255)

                                                                                              aTCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACt                                      >  1:1116859/1‑140 (MQ=255)

                                                                                                   aaCTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTgtcgt                                 <  1:1088967/140‑1 (MQ=255)

                                                                                                   aaCTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTgtcgt                                 <  2:61321/140‑1 (MQ=255)

                                                                                                   aaCTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTgtcgt                                 <  2:198788/140‑1 (MQ=255)

                                                                                                             ttAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGa                       >  2:619456/1‑140 (MQ=255)

                                                                                                             ttAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGa                       <  1:1771509/140‑1 (MQ=255)

                                                                                                             ttAATAATGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGa                       <  1:2169831/140‑1 (MQ=255)

                                                                                                                ataatGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATaa                    >  2:678303/1‑140 (MQ=255)

                                                                                                                  aatGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACg                  <  1:619456/140‑1 (MQ=255)

                                                                                                                   atGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGt                 <  2:968088/140‑1 (MQ=255)

                                                                                                                    tGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTgtcgt                                 >  2:1601346/1‑123 (MQ=255)

                                                                                                                    tGGCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTgtcgt                                 <  1:1601346/123‑1 (MQ=255)

                                                                                                                     ggCTGACTCGCAGCCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCa               <  2:833070/140‑1 (MQ=255)

                                                                                                                     ggCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCa               <  1:2208746/140‑1 (MQ=255)

                                                                                                                     ggCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCa               >  2:1044909/1‑140 (MQ=255)

                                                                                                                     ggCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCa               >  2:333577/1‑140 (MQ=255)

                                                                                                                     ggCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCa               >  1:2277650/1‑140 (MQ=255)

                                                                                                                     ggCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCa               >  2:2077602/1‑140 (MQ=255)

                                                                                                                      gCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGt                 >  2:2176279/1‑137 (MQ=255)

                                                                                                                      gCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGt                 <  1:2176279/137‑1 (MQ=255)

                                                                                                                      gCTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCAt              >  2:1808072/1‑140 (MQ=255)

                                                                                                                       cTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTcgcg                             <  1:1275809/124‑1 (MQ=255)

                                                                                                                       cTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTcgcg                             >  2:1275809/1‑124 (MQ=255)

                                                                                                                       cTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCAtt             >  1:964685/1‑140 (MQ=255)

                                                                                                                       cTGACTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCAtt             >  2:1750296/1‑140 (MQ=255)

                                                                                                                          aCTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTg          >  1:1600954/1‑140 (MQ=255)

                                                                                                                          aCTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTg          >  2:613145/1‑140 (MQ=255)

                                                                                                                           cTCGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTgg         >  1:2116409/1‑140 (MQ=255)

                                                                                                                             cGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACGAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTg       <  1:1297930/140‑1 (MQ=255)

                                                                                                                             cGCAACCCCTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTg       <  1:333577/140‑1 (MQ=255)

                                                                                                                                  ccccTGCCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAgcg  <  1:1183169/140‑1 (MQ=255)

GGACGCCGAAAAATCGTGAACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAATGGCTGACTCGCAACCCCTGTCCGGTGCTCCGGAAGGTGCCGAATATTTAAGAGCAGTGCTGCGCGCGCCGGTTTACGAGGCGGCGCAGGTTACGCCGCTACAAAAAATGGAAAAACTGTCGTCGCGTCTTGATAACGTCATTCTGGTGAAGCG  >  NC_000913/3955216‑3955485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A