Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,967,388	T→C	G324G (GGT→GGC)	rho →	transcription termination factor Rho

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,967,388	0	T	C	100.0%	523.4 / NA	144	G324G (GGT→GGC)	rho	transcription termination factor Rho
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (56/88); total (56/88)

Only 100 of 144 total aligned reads displayed.

CCGGCGTCAGGTAAAGTGTTGACCGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGTTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATCGACTACAACCGTTCTGGTACCCGTAAAGAAGAG  >  NC_000913/3967251‑3967523

ccGGCGTCAGGTAAAGTGTTGACCGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTc                                                                                                                                       >  2:1902861/1‑140 (MQ=255)

   gCGTCAGGTAAAGTGTTGACCGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTaa                                                                                                                                    >  1:316055/1‑140 (MQ=255)

   gCGTCAGGTAAAGTGTTGACCGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTaa                                                                                                                                    >  1:1471925/1‑140 (MQ=255)

    cGTCAGGTAAAGTGTTGACCGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTaaa                                                                                                                                   <  1:438548/140‑1 (MQ=255)

        aGGTAAAGTGTTGACCGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATgg                                                                                                                               <  1:52511/140‑1 (MQ=255)

        aGGTAAAGTGTTGACCGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATgg                                                                                                                               >  1:1831898/1‑140 (MQ=255)

         ggTAAAGTGTTGACCGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGa                                                                                                                              <  1:2296743/140‑1 (MQ=255)

         ggTAAAGTGTTGACCGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGa                                                                                                                              <  2:827292/140‑1 (MQ=255)

         ggTAAAGTGTTGACCGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGa                                                                                                                              <  1:990799/140‑1 (MQ=255)

             aaGTGTTGACCGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGaa                                                                                                                          <  2:2326314/140‑1 (MQ=255)

               gtgtTGACCGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGt                                                                                                                        <  1:1962803/140‑1 (MQ=255)

               gtgtTGACCGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGt                                                                                                                        <  1:173497/140‑1 (MQ=255)

                tgtTGACCGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGtt                                                                                                                       >  1:2322372/1‑140 (MQ=255)

                  ttGACCGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTAt                                                                                                                     <  2:1804539/140‑1 (MQ=255)

                   tGACCGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATc                                                                                                                    >  2:903810/1‑140 (MQ=255)

                    gACCGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCt                                                                                                                   >  1:495479/1‑140 (MQ=255)

                    gACCGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCt                                                                                                                   >  1:592491/1‑140 (MQ=255)

                    gACCGGTGGTGTGGACGCCAACGCCCTGCATCGTCCGAAACG‑‑‑CTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACg                                                                                                                >  1:691041/1‑140 (MQ=255)

                     aCCGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTa                                                                                                                  >  2:390596/1‑140 (MQ=255)

                       cGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACg                                                                                                                <  1:815770/140‑1 (MQ=255)

                       cGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACg                                                                                                                <  1:1432333/140‑1 (MQ=255)

                        ggtggtGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGa                                                                                                               <  1:1902861/140‑1 (MQ=255)

                        ggtggtGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGa                                                                                                               <  2:2011428/140‑1 (MQ=255)

                         gtggtgTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGaa                                                                                                              <  2:149684/140‑1 (MQ=255)

                         gtggtgTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGaa                                                                                                              >  1:1600107/1‑140 (MQ=255)

                          tggtgTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAag                                                                                                             >  1:738706/1‑140 (MQ=255)

                          tggtgTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAag                                                                                                             >  2:1061417/1‑140 (MQ=255)

                            gtgtGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAagag                                                                                                           <  1:1636986/140‑1 (MQ=255)

                              gtgGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGtt                                                                                                         <  2:26630/140‑1 (MQ=255)

                                ggATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTa                                                                                                       <  1:390596/140‑1 (MQ=255)

                                 gATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTaa                                                                                                      <  2:168613/140‑1 (MQ=255)

                                   tGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAg                                                                                                    >  2:1758203/1‑140 (MQ=255)

                                    gCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACg                                                                                                                >  1:993147/1‑127 (MQ=255)

                                    gCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGaa                                                                                                              >  1:383602/1‑129 (MQ=255)

                                       aaCGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGATCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTAc                                                                                                >  1:524577/1‑140 (MQ=255)

                                        aCGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACa                                                                                               <  1:1015817/140‑1 (MQ=255)

                                          gCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCTTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAgg                                                                                             <  1:1162655/140‑1 (MQ=255)

                                          gCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAgg                                                                                             <  1:151358/140‑1 (MQ=255)

                                          gCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAgg                                                                                             <  2:738706/140‑1 (MQ=255)

                                          gCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAgg                                                                                             <  1:133207/140‑1 (MQ=255)

                                          gCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAgg                                                                                             <  1:616941/140‑1 (MQ=255)

                                          gCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAgg                                                                                             <  2:363376/140‑1 (MQ=255)

                                            ccTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCa                                                                                           <  1:1061417/140‑1 (MQ=255)

                                            ccTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCa                                                                                           <  2:1855745/140‑1 (MQ=255)

                                             cTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCaa                                                                                          >  2:101433/1‑140 (MQ=255)

                                               gCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGATCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACa                                                                                        <  2:524577/140‑1 (MQ=255)

                                                  tCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATgg                                                                                     <  2:2216063/140‑1 (MQ=255)

                                                    gTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATATCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGaa                                                                                   <  1:87827/140‑1 (MQ=255)

                                                    gTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGaa                                                                                   <  2:316055/140‑1 (MQ=255)

                                                     tCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATgg                                                                                     <  2:2270396/137‑1 (MQ=255)

                                                     tCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATgg                                                                                     >  1:2270396/1‑137 (MQ=255)

                                                     tCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAAc                                                                                  >  2:384656/1‑140 (MQ=255)

                                                     tCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAAc                                                                                  >  2:1450000/1‑140 (MQ=255)

                                                     tCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAAc                                                                                  <  1:1736138/140‑1 (MQ=255)

                                                     tCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAAc                                                                                  >  1:613338/1‑140 (MQ=255)

                                                         aaaCGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCa                                                                              <  1:1783191/140‑1 (MQ=255)

                                                          aaCGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCAc                                                                             >  2:500106/1‑140 (MQ=255)

                                                           aCGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCAcc                                                                            <  2:1340000/140‑1 (MQ=255)

                                                            cGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACct                                                                           <  1:728146/140‑1 (MQ=255)

                                                            cGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACct                                                                           <  2:613338/140‑1 (MQ=255)

                                                             gCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACctc                                                                          <  1:591122/140‑1 (MQ=255)

                                                              cttcttTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACctct                                                                         <  1:101433/140‑1 (MQ=255)

                                                               ttcttTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACctctc                                                                        >  2:639794/1‑140 (MQ=255)

                                                                         cggcgCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACct                                                                           >  1:2037764/1‑127 (MQ=255)

                                                                         cggcgCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATc                                                              >  2:2083282/1‑140 (MQ=255)

                                                                          ggcgCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCg                                                             <  2:775822/140‑1 (MQ=255)

                                                                            cgcgTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCt                                                           >  1:1325559/1‑140 (MQ=255)

                                                                                tAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGaaa                                                       >  1:1435720/1‑140 (MQ=255)

                                                                                tAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGaaa                                                       >  1:2091691/1‑140 (MQ=255)

                                                                                 aaCGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGaaaa                                                      >  1:2005921/1‑140 (MQ=255)

                                                                                  aCGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGaaaac                                                     <  2:699958/140‑2 (MQ=255)

                                                                                      ggAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAAcgcg                                                 <  2:2005921/140‑1 (MQ=255)

                                                                                         agagGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCt                                              >  1:1614904/1‑140 (MQ=255)

                                                                                          gagGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCtt                                             <  1:1450000/140‑1 (MQ=255)

                                                                                             ggcggcAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTccc                                          >  2:2107051/1‑140 (MQ=255)

                                                                                             ggcggcAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTccc                                          >  2:2062283/1‑140 (MQ=255)

                                                                                             ggcggcAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTccc                                          >  1:332392/1‑140 (MQ=255)

                                                                                             ggcggcAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCG‑AAGATCGCTGAAAAACGCGTCTTCCCg                                         >  2:1603226/1‑140 (MQ=255)

                                                                                               cggcAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCgg                                        >  2:685201/1‑140 (MQ=255)

                                                                                               cggcAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCgg                                        >  2:1300968/1‑140 (MQ=255)

                                                                                                  cAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTa                                     <  1:39007/140‑1 (MQ=255)

                                                                                                           cATTATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATCGACTACa                            <  2:1493263/140‑1 (MQ=255)

                                                                                                             ttATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATCGACTACAAc                          <  1:310962/140‑1 (MQ=255)

                                                                                                             ttATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGCTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATCGACTACAAc                          <  2:2091691/140‑1 (MQ=255)

                                                                                                              tATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATc                                   >  1:1431524/1‑130 (MQ=255)

                                                                                                              tATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATc                                   <  2:1431524/130‑1 (MQ=255)

                                                                                                              tATCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATCGACTACAAcc                         >  1:2089963/1‑140 (MQ=255)

                                                                                                               aTCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATCGACTACAACCg                        >  1:1740661/1‑140 (MQ=255)

                                                                                                               aTCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATCGACTACAACCg                        >  2:742539/1‑140 (MQ=255)

                                                                                                                tCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATCGACTACAACCGt                       >  1:431383/1‑140 (MQ=255)

                                                                                                                tCGCGACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATCGACTACAACCGt                       <  2:332392/140‑1 (MQ=255)

                                                                                                                   cgACGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATCGACTACAACCGTTCt                    >  2:207531/1‑140 (MQ=255)

                                                                                                                      cGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATCGACTACAACCGTTCTGGt                 <  1:742539/140‑1 (MQ=255)

                                                                                                                      cGGCGCTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATCGACTACAACCGTTCTGGt                 <  2:1170139/140‑1 (MQ=255)

                                                                                                                        gcgcTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATCGACTACAACCGTTCTGGTAc               >  1:1822932/1‑140 (MQ=255)

                                                                                                                        gcgcTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATCGACTACAACCGTTCTGGTAc               <  1:685201/140‑1 (MQ=255)

                                                                                                                        gcgcTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATCGACTACAACCGTTCTGGTAc               <  1:1925559/140‑1 (MQ=255)

                                                                                                                           cTTATCGATACCGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATCGACTACAACCGTTCTGGTACCCg            <  2:1600107/140‑1 (MQ=255)

                                                                                                                                     ccGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATCGACTACAACCGTTCTGGTACCCGTAAAGAagag  <  1:207531/140‑1 (MQ=255)

                                                                                                                                     ccGGCTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATCGACTACAACCGTTCTGGTACCCGTAAAGAagag  <  1:1147288/140‑1 (MQ=255)

CCGGCGTCAGGTAAAGTGTTGACCGGTGGTGTGGATGCCAACGCCCTGCATCGTCCGAAACGCTTCTTTGGTGCGGCGCGTAACGTGGAAGAGGGCGGCAGCCTGACCATTATCGCGACGGCGCTTATCGATACCGGTTCTAAAATGGACGAAGTTATCTACGAAGAGTTTAAAGGTACAGGCAACATGGAACTGCACCTCTCTCGTAAGATCGCTGAAAAACGCGTCTTCCCGGCTATCGACTACAACCGTTCTGGTACCCGTAAAGAAGAG  >  NC_000913/3967251‑3967523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A