Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,223,381 G→A A83V (GCA→GTA)  iclR ← DNA‑binding transcriptional repressor IclR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,223,3810GA100.0% 586.7 / NA 169A83V (GCA→GTA) iclRDNA‑binding transcriptional repressor IclR
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (79/90);  total (79/90)

Only 100 of 170 total aligned reads displayed.

CGCTTTGATCAAGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGG  >  NC_000913/4223244‑4223516
                                                                                                                                         |                                                                                                                                       
cGCTTTGATCAAGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTAcc                                                                                                                                       >  1:929890/1‑140 (MQ=255)
 gCTTTGATCAAGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTAccc                                                                                                                                      >  2:2203926/1‑140 (MQ=255)
  cTTTGACCAAGCCCCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCa                                                                                                                                     <  1:1859687/140‑1 (MQ=255)
      gATCAAGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGt                                                                                                                                 <  2:1024260/140‑1 (MQ=255)
           aGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGt                                                                                                                                 >  1:738924/1‑135 (MQ=255)
           aGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGt                                                                                                                                 <  2:738924/135‑1 (MQ=255)
           aGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCa                                                                                                                             <  2:322451/139‑1 (MQ=255)
           aGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCa                                                                                                                             >  1:322451/1‑139 (MQ=255)
             cACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGtt                                                                                                                          >  2:423469/1‑140 (MQ=255)
             cACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGtt                                                                                                                          >  2:1539765/1‑140 (MQ=255)
              aCCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTc                                                                                                                         <  1:423469/140‑1 (MQ=255)
                cGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGc                                                                                                                       >  2:853735/1‑140 (MQ=255)
                 gCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGcc                                                                                                                      >  1:989778/1‑140 (MQ=255)
                 gCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGcc                                                                                                                      >  1:1820762/1‑140 (MQ=255)
                  ccATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCa                                                                                                                     >  1:1002935/1‑140 (MQ=255)
                  ccATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCa                                                                                                                     >  1:49869/1‑140 (MQ=255)
                         gACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGAc                                                                                                              <  2:394173/140‑1 (MQ=255)
                         gACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGAc                                                                                                              <  1:853735/140‑1 (MQ=255)
                          aCCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACg                                                                                                             >  1:1827567/1‑140 (MQ=255)
                             gTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCAc                                                                                                          >  2:267477/1‑140 (MQ=255)
                              tttCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACg                                                                                                         <  2:929890/140‑1 (MQ=255)
                               ttCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGa                                                                                                        <  1:1385210/140‑1 (MQ=255)
                               ttCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGa                                                                                                        >  2:2158484/1‑140 (MQ=255)
                               ttCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTACCAGTTCGCCAACCTGACGCACGa                                                                                                        >  1:24098/1‑140 (MQ=255)
                                 cGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGaaa                                                                                                      <  2:1378260/140‑1 (MQ=255)
                                 cGCCAGACTCCTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGaaa                                                                                                      >  2:1921216/1‑140 (MQ=255)
                                   ccAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAAcc                                                                                                    <  2:1820762/140‑1 (MQ=255)
                                      gACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCctg                                                                                                 <  1:443068/140‑1 (MQ=255)
                                         tctTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCctgctg                                                                                              <  1:1142377/140‑1 (MQ=255)
                                           ttCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGC‑GCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTg                                                                                           >  2:689228/1‑140 (MQ=255)
                                              cATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCa                                                                                         <  2:2090064/140‑1 (MQ=255)
                                              cATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCa                                                                                         <  1:606904/140‑1 (MQ=255)
                                              cATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCa                                                                                         <  2:2319699/140‑1 (MQ=255)
                                                 tAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGTTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCg                                                                                      <  1:698911/140‑1 (MQ=255)
                                                     ttGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGt                                                                                     >  1:1936793/1‑137 (MQ=255)
                                                     ttGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGt                                                                                     <  2:1936793/137‑1 (MQ=255)
                                                       gcgcAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTa                                                                                >  2:2043428/1‑140 (MQ=255)
                                                        cgcAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCGTGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAGACCCTGCTGTTGCATCGTGGTTAg                                                                               <  2:24098/140‑1 (MQ=255)
                                                         gcAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGc                                                                              <  1:2194096/140‑1 (MQ=255)
                                                         gcAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGc                                                                              <  1:1950272/140‑1 (MQ=255)
                                                         gcAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGc                                                                              >  1:871055/1‑140 (MQ=255)
                                                         gcAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGc                                                                              <  1:2325352/140‑1 (MQ=255)
                                                          cAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCa                                                                             >  1:689746/1‑140 (MQ=255)
                                                                 gggTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTg                                                                      <  2:123553/140‑1 (MQ=255)
                                                                 gggTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTg                                                                      <  1:2203926/140‑1 (MQ=255)
                                                                       aCAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTggg                                                                    >  2:1101721/1‑136 (MQ=255)
                                                                       aCAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTggg                                                                    <  1:1101721/136‑1 (MQ=255)
                                                                       aCAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTg                                                                      >  1:679057/1‑134 (MQ=255)
                                                                       aCAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTg                                                                      <  2:679057/134‑1 (MQ=255)
                                                                       aCAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCg                                                                 >  2:2108273/1‑139 (MQ=255)
                                                                       aCAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGt                                                                >  2:503604/1‑140 (MQ=255)
                                                                       aCAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGt                                                                >  2:14118/1‑140 (MQ=255)
                                                                       aCAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGt                                                                >  2:2057714/1‑140 (MQ=255)
                                                                       aCAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGt                                                                >  1:1010131/1‑140 (MQ=255)
                                                                       aCAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAACAGGCGGTGGGTCGt                                                                >  2:1978284/1‑140 (MQ=255)
                                                                         aaTCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTgg                                                              >  2:1406462/1‑140 (MQ=255)
                                                                           tCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGaa                                                            >  2:1296165/1‑140 (MQ=255)
                                                                           tCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGaa                                                            <  1:1306900/140‑1 (MQ=255)
                                                                           tCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGaa                                                            >  1:350890/1‑140 (MQ=255)
                                                                            cGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAAt                                                           >  2:2178125/1‑140 (MQ=255)
                                                                                 aCAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGt                                                      <  1:2099882/140‑1 (MQ=255)
                                                                                  cAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTa                                                     <  1:1762734/140‑1 (MQ=255)
                                                                                    aaTTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAAc                                                   <  1:2386417/140‑1 (MQ=255)
                                                                                     aTTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAAcc                                                  >  2:1266001/1‑140 (MQ=255)
                                                                                          ggCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCt                                             <  2:668608/140‑1 (MQ=255)
                                                                                           gCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCtt                                            >  2:1750754/1‑140 (MQ=255)
                                                                                             tctGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCttgt                                          <  1:498431/140‑1 (MQ=255)
                                                                                                 gagaAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTgcg                                      <  1:1882724/140‑1 (MQ=255)
                                                                                                  agaAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTgcgc                                     <  2:2266915/140‑1 (MQ=255)
                                                                                                      aGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTgcgc                                     >  2:1231452/1‑136 (MQ=255)
                                                                                                      aGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTgcgc                                     <  1:1231452/136‑1 (MQ=255)
                                                                                                      aGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGt                                 >  2:1803173/1‑140 (MQ=255)
                                                                                                         tgctgcCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTcc                              <  1:1601615/140‑1 (MQ=255)
                                                                                                           ctgcCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGt                            >  2:1336235/1‑140 (MQ=255)
                                                                                                           ctgcCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGt                            >  2:2361763/1‑140 (MQ=255)
                                                                                                             gcCGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGa                          <  1:1802863/140‑1 (MQ=255)
                                                                                                              ccGACCATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAg                         <  2:1312610/140‑1 (MQ=255)
                                                                                                                   cATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCca                    <  1:1336235/140‑1 (MQ=255)
                                                                                                                   cATAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCca                    <  1:564022/140‑1 (MQ=255)
                                                                                                                     tAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCcaca                  <  2:1010131/140‑1 (MQ=255)
                                                                                                                     tAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCcaca                  <  2:1881738/140‑1 (MQ=255)
                                                                                                                     tAAAGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCcaca                  <  1:1539765/140‑1 (MQ=255)
                                                                                                                      aaaGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCacac                 <  1:1252405/140‑1 (MQ=255)
                                                                                                                      aaaGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCacac                 <  1:666766/140‑1 (MQ=255)
                                                                                                                       aaGGCATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACt                <  2:871055/140‑1 (MQ=255)
                                                                                                                           cATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCa            <  1:1296165/140‑1 (MQ=255)
                                                                                                                           cATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCa            >  2:48493/1‑140 (MQ=255)
                                                                                                                           cATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCa            >  1:2047826/1‑140 (MQ=255)
                                                                                                                           cATGTGCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCa            <  1:2010018/140‑1 (MQ=255)
                                                                                                                             tgtgCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCa            <  2:1576040/138‑1 (MQ=255)
                                                                                                                             tgtgCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCa            >  1:1576040/1‑138 (MQ=255)
                                                                                                                             tgtgCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCAtt          >  2:975909/1‑140 (MQ=255)
                                                                                                                             tgtgCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCAtt          >  1:2130858/1‑140 (MQ=255)
                                                                                                                             tgtgCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCAtt          >  1:696813/1‑140 (MQ=255)
                                                                                                                              gtgCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGt                        >  1:142596/1‑125 (MQ=255)
                                                                                                                              gtgCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGt                        <  2:142596/125‑1 (MQ=255)
                                                                                                                              gtgCGCCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTg         >  2:615664/1‑140 (MQ=255)
                                                                                                                                 cgcCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCa            <  2:585778/134‑1 (MQ=255)
                                                                                                                                 cgcCGATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGAt      >  1:2242838/1‑140 (MQ=255)
                                                                                                                                     gATTACCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTCAGTGCCACACTGCCATTGGATTCgg  >  2:2168634/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
CGCTTTGATCAAGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGG  >  NC_000913/4223244‑4223516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A