Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,271,898	G→A	A658A (GCC→GCT)	uvrA ←	excision nuclease subunit A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,271,898	0	G	A	100.0%	404.3 / NA	113	A658A (GCC→GCT)	uvrA	excision nuclease subunit A
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (56/57); total (56/57)

Only 100 of 113 total aligned reads displayed.

AGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGGGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAGCGTCAGCGTCACGTCCTTCAGGTTGTTGCCGCGTGCGCCTGTCAGCTTC  >  NC_000913/4271762‑4272033

aGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCa                                                                                                                                      <  2:434545/140‑1 (MQ=255)

aGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCa                                                                                                                                      <  1:1052923/140‑1 (MQ=255)

aGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCa                                                                                                                                      <  1:1958910/140‑1 (MQ=255)

  gTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAAt                                                                                                                                    >  1:73178/1‑140 (MQ=255)

   tCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGAT‑‑GGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCgg                                                                                                                                 <  2:1602818/140‑1 (MQ=255)

    cGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCg                                                                                                                                  >  2:366983/1‑140 (MQ=255)

     gCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCgg                                                                                                                                 <  2:1580625/140‑1 (MQ=255)

      ccGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGTCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCggg                                                                                                                                >  1:1148144/1‑140 (MQ=255)

      ccGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAAt                                                                                                                                    <  1:887464/136‑1 (MQ=255)

      ccGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAAt                                                                                                                                    >  2:887464/1‑136 (MQ=255)

      ccGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCggg                                                                                                                                <  1:1454641/140‑1 (MQ=255)

      ccGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCggg                                                                                                                                >  2:1454641/1‑140 (MQ=255)

      ccGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCggg                                                                                                                                >  2:1507729/1‑140 (MQ=255)

       cGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGa                                                                                                                               <  2:853747/140‑1 (MQ=255)

       cGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGa                                                                                                                               >  1:2385826/1‑140 (MQ=255)

       cGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGa                                                                                                                               >  1:845697/1‑140 (MQ=255)

        gggTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGaa                                                                                                                              <  1:397926/140‑1 (MQ=255)

          gTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACa                                                                                                                            <  2:2300170/140‑1 (MQ=255)

            tAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAgt                                                                                                                          <  2:1720475/140‑1 (MQ=255)

             aGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAgtg                                                                                                                         <  1:573131/140‑1 (MQ=255)

             aGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAgtg                                                                                                                         >  2:1262970/1‑140 (MQ=255)

             aGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAgtg                                                                                                                         <  2:1914541/140‑1 (MQ=255)

                  gTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCg                                                                                                                    <  1:1416823/140‑1 (MQ=255)

                    ggAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAgtg                                                                                                                         <  1:1995315/133‑1 (MQ=255)

                    ggAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAgtg                                                                                                                         >  1:551667/1‑133 (MQ=255)

                    ggAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAgtg                                                                                                                         >  2:1995315/1‑133 (MQ=255)

                    ggAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAgtg                                                                                                                         <  2:551667/133‑1 (MQ=255)

                    ggAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGtt                                                                                                                  >  2:1581500/1‑140 (MQ=255)

                        tACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAgtg                                                                                                                         <  1:2146656/129‑1 (MQ=255)

                        tACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAgtg                                                                                                                         >  2:2146656/1‑129 (MQ=255)

                        tACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATc                                                                                                              >  1:552298/1‑140 (MQ=255)

                           gACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGc                                                                                                           <  2:1965179/140‑1 (MQ=255)

                             ccAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAgtg                                                                                                                         >  1:997328/1‑124 (MQ=255)

                             ccAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGt                                                                                                         >  2:1107111/1‑140 (MQ=255)

                               aaTTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCg                                                                                                       >  1:606347/1‑140 (MQ=255)

                                aTTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGa                                                                                                      >  2:1084925/1‑140 (MQ=255)

                                aTTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGa                                                                                                      >  2:2359489/1‑140 (MQ=255)

                                aTTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGa                                                                                                      >  1:1073849/1‑140 (MQ=255)

                                aTTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGa                                                                                                      >  1:1061612/1‑140 (MQ=255)

                                aTTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGa                                                                                                      >  1:2053465/1‑140 (MQ=255)

                                     gCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTAc                                                                                                 <  2:543095/140‑1 (MQ=255)

                                      cTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTAcc                                                                                                >  1:1423097/1‑140 (MQ=255)

                                         tGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGa                                                                                             <  2:2080260/140‑1 (MQ=255)

                                           gTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAAc                                                                                           <  2:2385826/140‑1 (MQ=255)

                                           gTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAAc                                                                                           >  1:1619186/1‑140 (MQ=255)

                                           gTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAAc                                                                                           >  2:2279816/1‑140 (MQ=255)

                                           gTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAAc                                                                                           >  2:754221/1‑140 (MQ=255)

                                                   cGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAAcc                                                                                   >  2:272675/1‑140 (MQ=255)

                                                     aTCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAAcccc                                                                                 >  1:1710020/1‑140 (MQ=255)

                                                      tCACTTTATCGAAATGCTCCAGTCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCg                                                                                <  2:1148144/140‑1 (MQ=255)

                                                      tCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCg                                                                                <  1:2370897/140‑1 (MQ=255)

                                                          tttATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGa                                                                            >  2:1588736/1‑140 (MQ=255)

                                                          tttATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGa                                                                            <  1:1107111/140‑1 (MQ=255)

                                                          tttATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGa                                                                            <  1:2359489/140‑1 (MQ=255)

                                                          tttATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGa                                                                            <  1:1084925/140‑1 (MQ=255)

                                                          tttATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGa                                                                            <  1:928547/140‑1 (MQ=255)

                                                          tttATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGa                                                                            <  1:664474/140‑1 (MQ=255)

                                                          tttATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGa                                                                            <  1:272675/140‑1 (MQ=255)

                                                          tttATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGa                                                                            <  1:1588736/140‑1 (MQ=255)

                                                            tATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATg                                                                          <  2:1073849/140‑1 (MQ=255)

                                                               cGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAg                                                                       >  1:193046/1‑140 (MQ=255)

                                                                    tGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTaaa                                                                  >  1:646783/1‑140 (MQ=255)

                                                                    tGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTaaa                                                                  >  1:141396/1‑140 (MQ=255)

                                                                      cTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAACCCCCGGTGATGCAGGTAAACa                                                                <  2:1710020/140‑1 (MQ=255)

                                                                      cTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACa                                                                <  1:1581500/140‑1 (MQ=255)

                                                                      cTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACa                                                                <  2:606347/140‑1 (MQ=255)

                                                                       tCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAg                                                               <  1:366983/140‑1 (MQ=255)

                                                                         cAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGAc                                                             <  2:193046/140‑1 (MQ=255)

                                                                            ccccTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCa                                                          >  2:740621/1‑140 (MQ=255)

                                                                            ccccTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCa                                                          >  1:2228419/1‑140 (MQ=255)

                                                                             cccTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCa                                                          >  1:2029444/1‑139 (MQ=255)

                                                                             cccTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCa                                                          <  2:2029444/139‑1 (MQ=255)

                                                                              ccTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCAcc                                                        >  1:2068258/1‑140 (MQ=255)

                                                                                tGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCa                                                                        <  2:1189949/122‑1 (MQ=255)

                                                                                tGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCa                                                                        >  1:1189949/1‑122 (MQ=255)

                                                                                tGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCgg                                                      >  1:284422/1‑140 (MQ=255)

                                                                                       cgcgATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGcagcgtc                                               >  1:1325165/1‑140 (MQ=255)

                                                                                        gcgATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACa                                                                >  1:847574/1‑122 (MQ=255)

                                                                                        gcgATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACa                                                                <  2:847574/122‑1 (MQ=255)

                                                                                              cGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAgcgtcagcgtca                                        <  2:845697/140‑1 (MQ=255)

                                                                                                gTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAGCGTCAGCGTCACg                                      <  2:646783/140‑1 (MQ=255)

                                                                                                 tGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAGCGTCAGCGTCACGt                                     >  1:1298987/1‑140 (MQ=255)

                                                                                                     ggTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAGCGTCAGCGTCACGTCCtt                                 <  2:1423097/140‑1 (MQ=255)

                                                                                                      gTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAGCGTCAGCGTCACGTCCTTc                                >  1:1094300/1‑140 (MQ=255)

                                                                                                           gCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAgcgtcagcgtca                                        <  2:845332/127‑1 (MQ=255)

                                                                                                           gCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAgcgtcagcgtca                                        >  1:845332/1‑127 (MQ=255)

                                                                                                           gCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAGCGTCAGCGTCACGTCCTTCAGgtt                           >  2:423166/1‑140 (MQ=255)

                                                                                                           gCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAGCGTCAGCGTCACGTCCTTCAGgtt                           >  1:169149/1‑140 (MQ=255)

                                                                                                           gCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAGCGTCAGCGTCACGTCCTTCAGgtt                           >  2:1601297/1‑140 (MQ=255)

                                                                                                           gCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAGCGTCAGCGTCACGTCCTTCAGgtt                           >  1:1330405/1‑140 (MQ=255)

                                                                                                           gCGATGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAGCGTCAGCGTCACGTCCTTCAGgtt                           >  1:947189/1‑140 (MQ=255)

                                                                                                               tGGTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAGCGTCAGCGTCACGTCCTTCAGGttgttg                       <  2:552298/140‑1 (MQ=255)

                                                                                                                ggTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAGCGTCAGCGTCACGTCCTTCAGGTTGTTGc                      >  1:494712/1‑140 (MQ=255)

                                                                                                                ggTCGCCCCATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAGCGTCAGCGTCACGTCCTTCAGGTTGTTGc                      >  2:1125311/1‑140 (MQ=255)

                                                                                                                      cccATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAGCGTCAGCGTCACGTCCTTCAGGTTGTTGCCGCGTg                <  2:2068258/140‑1 (MQ=255)

                                                                                                                       ccATTCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAGCGTCAGCGTCACGTCCTTCAGGTTGTTGCCGCGTgc               <  2:1298987/140‑1 (MQ=255)

                                                                                                                           tCAACTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAGCGTCAGCGTCACGTCCTTCAGGTTGTTGCCGCGTGCGCCt           >  1:318418/1‑140 (MQ=255)

                                                                                                                              aCTGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAGCGTCAGCGTCACGTCCTTCAGGTTGTTGCCGCGTGCGCCTGTc        >  1:1640811/1‑140 (MQ=255)

                                                                                                                                tGGCGTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAGCGTCAGCGTCACGTCCTTCAGGTTGTTGCCGCGTGCGCCTGTCAg      >  1:1355279/1‑140 (MQ=255)

                                                                                                                                    gTTGAGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAGCGTCAGCGTCACGTCCTTCAGGTTGTTGCCGCGTGCGCCTGTCAGCTTc  >  1:2060805/1‑140 (MQ=255)

AGGTCGCCGGGTTAGAACGTGGAGTACGACCAATTGGGCTTTGGTCGATATCGATCACTTTATCGAAATGCTCCAGCCCCTGAATATCGCGATACGGTGCTGGTTCGGCGATGGTCGCCCCATTCAACTGGCGTTGGGCAATCGGGAACAGTGTGTCGTTAATCAGCGTCGATTTACCGGAACCTGAAACCCCGGTGATGCAGGTAAACAGACCCACCGGCAGCGTCAGCGTCACGTCCTTCAGGTTGTTGCCGCGTGCGCCTGTCAGCTTC  >  NC_000913/4271762‑4272033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A