Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F28 I1 R1	227	52.0	1764248	99.3%	1751898	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,273,541	A→G	L111L (TTA→CTA)	uvrA ←	excision nuclease subunit A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,273,541	0	A	G	100.0%	214.5 / NA	61	L111L (TTA→CTA)	uvrA	excision nuclease subunit A
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (31/30); total (31/30)

TTTAATGATTGGCGCGAGTAGCATCAGACGCTTGCCTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAACAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAGCCCCTCAATATGATCGACGTCCGGCTTTTCCATCAGT  >  NC_000913/4273404‑4273674

tttAATGATTGGCGCGAGTAGCATCAGACGCTTGCCTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCa                                                                                                                                     >  2:809008/1‑140 (MQ=255)

 ttAATGATTGGCGCGAGTAGCATCAGACGCTTGCCTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCaa                                                                                                                                    <  1:829327/140‑1 (MQ=255)

       aTTGGCGCGAGTAGCATCAGACGCTTGCCTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCaa                                                                                                                              <  2:129903/140‑1 (MQ=255)

          ggCGCGAGTAGCATCAGACGCTTGCCTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATa                                                                                                                           >  2:878706/1‑140 (MQ=255)

          ggCGCGAGTAGCATCAGACGCTTGCCTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATa                                                                                                                           >  1:60513/1‑140 (MQ=255)

          ggCGCGAGTAGCATCAGACGCTTGCCTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATa                                                                                                                           >  1:498633/1‑140 (MQ=255)

            cgcgAGTAGCATCAGACGCTTGCCTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGt                                                                                                                         >  2:652152/1‑140 (MQ=255)

            cgcgAGTAGCATCAGACGCTTGCCTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGt                                                                                                                         >  2:619539/1‑140 (MQ=255)

                aGTAGCATCAGACGCTTGCCTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTg                                                                                                                     >  2:562410/1‑140 (MQ=255)

                        cAGACGCTTGCCTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCgg                                                                                                             <  1:15702/140‑1 (MQ=255)

                             gCTTGCCTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGAtt                                                                                                        <  2:498633/140‑1 (MQ=255)

                               ttGCCTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGt                                                                                                      >  1:877431/1‑140 (MQ=255)

                               ttGCCTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGt                                                                                                      >  2:399/1‑140 (MQ=255)

                               ttGCCTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGt                                                                                                      >  1:745376/1‑140 (MQ=255)

                                tGCCTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTc                                                                                                     >  2:393842/1‑140 (MQ=255)

                                tGCCTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTc                                                                                                     >  2:447369/1‑140 (MQ=255)

                                 gCCTTCCGGCTGCGACAGCACGTTATCCCCCATCTGGCTCACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGTTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGAcc                                                                                                    <  2:143297/140‑1 (MQ=255)

                                 gCCTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTcc                                                                                                    <  1:652152/140‑1 (MQ=255)

                                  ccTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTccc                                                                                                   <  1:464057/140‑1 (MQ=255)

                                  ccTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTccc                                                                                                   <  1:132069/140‑1 (MQ=255)

                                    ttCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCa                                                                                                 <  1:809008/140‑1 (MQ=255)

                                       cGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCg                                                                                              >  1:199191/1‑140 (MQ=255)

                                                   cACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGt                                                                                  >  2:64862/1‑140 (MQ=255)

                                                   cACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGt                                                                                  >  1:649198/1‑140 (MQ=255)

                                                      gTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTAt                                                                               <  1:878706/140‑1 (MQ=255)

                                                          tCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATgaga                                                                           >  2:358878/1‑140 (MQ=255)

                                                               caTCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCg                                                                      >  2:768855/1‑140 (MQ=255)

                                                               caTCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCg                                                                      >  2:586525/1‑140 (MQ=255)

                                                                  cTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGAtt                                                                   >  2:150804/1‑140 (MQ=255)

                                                                    ggCTGATGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGGGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTc                                                                 >  1:868078/1‑140 (MQ=255)

                                                                     gCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCt                                                                >  2:630980/1‑140 (MQ=255)

                                                                      cTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTg                                                               <  1:116137/140‑1 (MQ=255)

                                                                               tGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTga                                                      <  1:150804/140‑1 (MQ=255)

                                                                                 cgccgcCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTgaga                                                    <  1:141261/140‑1 (MQ=255)

                                                                                 cgccgcCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTgaga                                                    <  1:705105/140‑1 (MQ=255)

                                                                                 cgccgcCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTgaga                                                    <  1:64862/140‑1 (MQ=255)

                                                                                    cgccAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATgg                                                 <  1:630980/140‑1 (MQ=255)

                                                                                     gccAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGc                                                >  2:764476/1‑140 (MQ=255)

                                                                                     gccAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGc                                                >  2:428505/1‑140 (MQ=255)

                                                                                      ccAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCa                                               <  1:428505/140‑1 (MQ=255)

                                                                                      ccAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCa                                               <  1:764476/140‑1 (MQ=255)

                                                                                             gACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGaaa                                        <  2:199191/140‑1 (MQ=255)

                                                                                              aCGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAg                                       <  1:619539/140‑1 (MQ=255)

                                                                                               cgtcgtGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAGc                                      >  1:115428/1‑140 (MQ=255)

                                                                                               cgtcgtGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAGc                                      <  1:399/140‑1 (MQ=255)

                                                                                                 tcgtGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAGccc                                    <  2:479070/140‑1 (MQ=255)

                                                                                                 tcgtGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAGccc                                    <  2:187808/140‑1 (MQ=255)

                                                                                                             cAGCGCGGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAGCCCCTCAATATGATc                        <  2:60513/140‑1 (MQ=255)

                                                                                                                cgcgGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAGccc                                    >  2:270545/1‑125 (MQ=255)

                                                                                                                cgcgGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAGccc                                    <  1:270545/125‑1 (MQ=255)

                                                                                                                cgcgGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAGCCCCTCa                                <  1:203617/129‑1 (MQ=255)

                                                                                                                cgcgGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAGCCCCTCa                                >  2:203617/1‑129 (MQ=255)

                                                                                                                cgcgGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAGCCCCTCa                                <  1:755498/129‑1 (MQ=255)

                                                                                                                cgcgGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAGCCCCTCa                                >  2:755498/1‑129 (MQ=255)

                                                                                                                cgcgGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAGCCCCTCAATATGATCGAc                     >  2:592488/1‑140 (MQ=255)

                                                                                                                cgcgGCTCGCCAACGCGGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAGCCCCTCAATATGATCGAc                     >  1:391840/1‑140 (MQ=255)

                                                                                                                cgcgGCTCGCCAACGCGGGCGAATAGCAAACACAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAGccc                                    >  2:398431/1‑125 (MQ=255)

                                                                                                                cgcgGCTCGCCAACGCGGGCGAATAGCAAACACAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAGccc                                    <  1:398431/125‑1 (MQ=255)

                                                                                                                               cgGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAGCCCCTCAATATGATCGACGTCCGGCTTTTCCAt      <  1:358878/140‑1 (MQ=255)

                                                                                                                               cgGGCGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAGCCCCTCAATATGATCGACGTCCGGCTTTTCCAt      <  1:586525/140‑1 (MQ=255)

                                                                                                                                   cGAATAGCAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAGCCCCTCAATATGATCGACGTCCGGCTTTTCCATCAGt  >  2:502517/1‑140 (MQ=255)

TTTAATGATTGGCGCGAGTAGCATCAGACGCTTGCCTTCCGGCTGCGACAGCACGTTATCCACCATCTGGCTGACGGTTTGCGCCGCCAGCGGGACGTCGTGGTCCGGACAGCGCGGCTCGCCAACGCGGGCGAATAACAAACGCAAATAGTCGTGGATTTCGGTGATTGTCCCCACCGTAGAACGCGGGTTATGAGACGTCGATTTCTGCTCAATTGAGATGGCAGGAGAAAGCCCCTCAATATGATCGACGTCCGGCTTTTCCATCAGT  >  NC_000913/4273404‑4273674

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A