Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,300,614 C→T G139G (GGG→GGA)  mdtP ← putative multidrug efflux pump outer membrane channel

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,300,6140CT97.8% 475.4 / ‑0.6 139G139G (GGG→GGA) mdtPputative multidrug efflux pump outer membrane channel
Reads supporting (aligned to +/- strand):  ref base C (2/1);  new base T (55/81);  total (57/82)
Fisher's exact test for biased strand distribution p-value = 5.68e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.02e-01

Only 100 of 144 total aligned reads displayed.

ATAGCTCTACTGCTGCGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGCCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACT  >  NC_000913/4300478‑4300750
                                                                                                                                        |                                                                                                                                        
   gCTCTACTGCTGCGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCTATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGgtccgtcc                                                                                                                                    <  2:2095396/140‑1 (MQ=255)
   gCTCTACTGCTGCGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGgtccgtcc                                                                                                                                    <  1:1956312/140‑1 (MQ=255)
   gCTCTACTGCTGCGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGgtccgtcc                                                                                                                                    >  1:1875141/1‑140 (MQ=255)
   gCTCTACTGCTGCGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGgtccgtcc                                                                                                                                    <  2:775756/140‑1 (MQ=255)
        aCTGCTGCGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATAcc                                                                                                                               <  1:1782605/140‑1 (MQ=255)
        aCTGCTGCGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATAcc                                                                                                                               <  2:32488/140‑1 (MQ=255)
        aCTGCTGCGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATAcc                                                                                                                               >  2:360072/1‑140 (MQ=255)
        aCTGCTGCGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATAcc                                                                                                                               <  2:2173503/140‑1 (MQ=255)
        aCTGCTGCGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATAcc                                                                                                                               >  2:46706/1‑140 (MQ=255)
        aCTGCTGCGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATAcc                                                                                                                               <  2:1875141/140‑1 (MQ=255)
        aCTGCTGCGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATAcc                                                                                                                               <  1:1296372/140‑1 (MQ=255)
        aCTGCTGCGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATAcc                                                                                                                               >  2:1365291/1‑140 (MQ=255)
        aCTGCTGCGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATAcc                                                                                                                               <  2:1687694/140‑1 (MQ=255)
           gctgcGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATCTACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAg                                                                                                                            >  2:2149985/1‑140 (MQ=255)
            ctgcGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGt                                                                                                                           >  2:725452/1‑140 (MQ=255)
             tgcGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTg                                                                                                                          <  1:484923/140‑1 (MQ=255)
             tgcGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTg                                                                                                                          <  1:586112/140‑1 (MQ=255)
             tgcGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTg                                                                                                                          <  1:963922/140‑1 (MQ=255)
              gcGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGc                                                                                                                         >  2:736037/1‑140 (MQ=255)
               cGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCt                                                                                                                        <  2:1214578/140‑1 (MQ=255)
               cGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCt                                                                                                                        <  2:1174422/140‑1 (MQ=255)
               cGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCt                                                                                                                        >  1:1143487/1‑140 (MQ=255)
               cGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCt                                                                                                                        >  1:1174422/1‑140 (MQ=255)
               cGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCt                                                                                                                        >  2:1829443/1‑140 (MQ=255)
                   ttCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGgcg                                                                                                                    <  1:1695380/140‑1 (MQ=255)
                    tCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGgcgc                                                                                                                   <  2:590172/140‑1 (MQ=255)
                    tCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGgcgc                                                                                                                   <  1:1829443/140‑1 (MQ=255)
                    tCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGgcgc                                                                                                                   <  2:916169/140‑1 (MQ=255)
                    tCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGgcgc                                                                                                                   <  2:295464/140‑1 (MQ=255)
                    acTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGgcgc                                                                                                                   <  1:1350348/139‑1 (MQ=255)
                     cTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCa                                                                                                                  <  2:970606/140‑1 (MQ=255)
                      tGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCAt                                                                                                                 <  2:1905187/140‑1 (MQ=255)
                       gCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATc                                                                                                                <  1:725452/140‑1 (MQ=255)
                         cAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCTATACCCAGTGCTGGCGCATCCa                                                                                                              <  2:289302/140‑1 (MQ=255)
                         cAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCa                                                                                                              <  1:1122763/140‑1 (MQ=255)
                          aGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCAt                                                                                                             <  2:2327399/140‑1 (MQ=255)
                            cgcgGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCa                                                                                                                  >  2:1142358/1‑133 (MQ=255)
                            cgcgGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCa                                                                                                                  <  1:1142358/133‑1 (MQ=255)
                                gCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATa                                                                                                       <  2:1918822/140‑1 (MQ=255)
                                 cATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATaa                                                                                                      <  2:772749/140‑1 (MQ=255)
                                      tGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCt                                                                                                 >  2:668175/1‑140 (MQ=255)
                                          cgcCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTaaa                                                                                             >  2:499950/1‑140 (MQ=255)
                                           gcCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTaaaa                                                                                            >  2:46118/1‑140 (MQ=255)
                                                tGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCg                                                                                       <  1:2382801/140‑1 (MQ=255)
                                                 ggcggcggcAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGt                                                                                      <  1:736037/140‑1 (MQ=255)
                                                  gcggcggcAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGtt                                                                                     <  1:1240141/140‑1 (MQ=255)
                                                        gcAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCga                                                                               <  1:2179979/140‑1 (MQ=255)
                                                           aCCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGac                                                                            >  1:1025537/1‑140 (MQ=255)
                                                              gCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACg                                                                         >  2:1587926/1‑140 (MQ=255)
                                                                tGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGtt                                                                       <  1:1232412/140‑1 (MQ=255)
                                                                tGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGtt                                                                       <  1:46118/140‑1 (MQ=255)
                                                                      aTGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGt                                                                 <  2:1118490/140‑1 (MQ=255)
                                                                      aTGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCCTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGt                                                                 >  1:153013/1‑140 (MQ=255)
                                                                         cacaCCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGa                                                              >  1:1812095/1‑140 (MQ=255)
                                                                         cacaCCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGa                                                              <  2:1287752/140‑1 (MQ=255)
                                                                           cacCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGc                                                            <  2:1104597/140‑1 (MQ=255)
                                                                           cacCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGc                                                            <  1:390484/140‑1 (MQ=255)
                                                                           cacCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGc                                                            <  2:1033364/140‑1 (MQ=255)
                                                                           cacCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGc                                                            <  1:2149985/140‑1 (MQ=255)
                                                                           cacCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGc                                                            <  1:153220/140‑1 (MQ=255)
                                                                           cacCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGc                                                            <  1:1875040/140‑1 (MQ=255)
                                                                           cacCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGc                                                            <  1:668175/140‑1 (MQ=255)
                                                                               ccACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATcc                                                        >  1:474043/1‑140 (MQ=255)
                                                                                 acaAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCt                                                      >  2:331781/1‑140 (MQ=255)
                                                                                 acaAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGCCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCt                                                      >  1:564100/1‑140 (MQ=255)
                                                                                        aaGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAGGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTg                                               <  1:877269/140‑1 (MQ=255)
                                                                                        aaGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAGGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTg                                               >  2:877269/1‑140 (MQ=255)
                                                                                        aaGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTg                                               >  1:2025218/1‑140 (MQ=255)
                                                                                        aaGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTg                                               <  1:2026619/140‑1 (MQ=255)
                                                                                        aaGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTg                                               >  2:2026619/1‑140 (MQ=255)
                                                                                        aaGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTg                                               >  1:1247878/1‑140 (MQ=255)
                                                                                        aaGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTg                                               >  1:527431/1‑140 (MQ=255)
                                                                                        aaGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTg                                               <  2:1210722/140‑1 (MQ=255)
                                                                                          gATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCg                                             >  1:296103/1‑140 (MQ=255)
                                                                                           aTCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGa                                            <  2:582659/140‑1 (MQ=255)
                                                                                            tCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGAc                                           <  2:527431/140‑1 (MQ=255)
                                                                                            tCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGAc                                           <  2:1247878/140‑1 (MQ=255)
                                                                                               aGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTg                                        <  1:1042562/140‑1 (MQ=255)
                                                                                               aGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTg                                        <  1:46706/140‑1 (MQ=255)
                                                                                               aGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTg                                        >  1:606528/1‑140 (MQ=255)
                                                                                                 tCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTa                                      >  1:889205/1‑140 (MQ=255)
                                                                                                  ccGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTaa                                     <  1:1829508/140‑1 (MQ=255)
                                                                                                  ccGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTaa                                     <  2:83544/140‑1 (MQ=255)
                                                                                                    ggCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTg                                               <  2:229925/128‑1 (MQ=255)
                                                                                                    ggCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAAtt                                   >  1:1953006/1‑140 (MQ=255)
                                                                                                     gCAAACAAACCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATtg                                  >  2:1829660/1‑140 (MQ=255)
                                                                                                           aaacCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAAcc                            >  2:1022908/1‑140 (MQ=255)
                                                                                                             acCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCgg                          >  1:937092/1‑140 (MQ=255)
                                                                                                             acCTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCgg                          >  1:1242199/1‑140 (MQ=255)
                                                                                                              ccTACTGTGGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGc                         <  1:331781/140‑1 (MQ=255)
                                                                                                                     tgGCTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAAc                  >  1:299829/1‑140 (MQ=255)
                                                                                                                        cTTCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTT‑AAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAAt              <  2:129253/140‑1 (MQ=255)
                                                                                                                         ttCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAAt              <  2:2050917/140‑1 (MQ=255)
                                                                                                                         ttCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAAt              <  2:150489/140‑1 (MQ=255)
                                                                                                                          tCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGGATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGGTGGGACCTGTAATTGTGAACCGGGATCTAACAAATc             >  2:2392747/1‑140 (MQ=255)
                                                                                                                          tCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATc             >  2:188145/1‑140 (MQ=255)
                                                                                                                          tCCGTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATc             >  1:222137/1‑140 (MQ=255)
                                                                                                                             gTATAGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGc          >  2:2314071/1‑140 (MQ=255)
                                                                                                                              tataGTACGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGcc         <  2:1146917/140‑1 (MQ=255)
                                                                                                                                     cGGTCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACt  <  2:222137/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
ATAGCTCTACTGCTGCGGTTTCTGCCAGCGCGGCATTATGCGCGCCAATGGCGGCGGCAACCGCTGAGCGATGCACACCCCACAAATCAAGATCCAGTCCGGCAAACAAACCTACTGTGGCTTCCGTATAGTACGGCCCGTCCATACCCAGTGCTGGCGCATCCATTGAATAAGGGCTTAAAAAGCCGTTCGCCGAGACACGTTGGCGGTTGAGCATCCCTAACGCTGCGACCTGTAATTGTGAACCGGCATCTAACAAATCGGCCTGGGACT  >  NC_000913/4300478‑4300750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A