Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,413,140 A→G Y38C (TAC→TGC)  yjfC → putative acid‑‑amine ligase YjfC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,413,1400AG100.0% 577.0 / NA 159Y38C (TAC→TGC) yjfCputative acid‑‑amine ligase YjfC
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (93/66);  total (93/66)

Only 100 of 173 total aligned reads displayed.

CCCGTGGGCATTGGGGAGGCTAATCATGCTGAGACACAACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCTGACGCAACTGGCGATCCCGCCGTTGTACT  >  NC_000913/4413003‑4413277
                                                                                                                                         |                                                                                                                                         
cccGTGGGCATTGGGGAGGCTAATCATGCTGAGACACAACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGcc                                                                                                                                         >  2:1134015/1‑140 (MQ=255)
    tGGGCATTGGGGAGGCTAATCATGCTGAGACACAACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGttt                                                                                                                                     <  1:143335/140‑1 (MQ=255)
        cATTGGGGAGGCTAATCATGCTGAGACACAACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTAct                                                                                                                                 <  1:487955/140‑1 (MQ=255)
           tGGGGAGGCTAATCATGCTGAGACACAACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTg                                                                                                                              >  1:1764413/1‑140 (MQ=255)
             gggAGGCTAATCATGCTGAGACACAACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTgcg                                                                                                                            <  1:1676644/140‑1 (MQ=255)
             gggAGGCTAATCATGCTGAGACACAACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTgcg                                                                                                                            <  1:1621708/140‑1 (MQ=255)
             gggAGGCTAATCATGCTGAGACACAACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTgcg                                                                                                                            <  1:734608/140‑1 (MQ=255)
                aGGCTAATCATGCTGAGACACAACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCa                                                                                                                         <  2:1583470/140‑1 (MQ=255)
                aGGCTAATCATGCTGAGACACAACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCa                                                                                                                         <  2:2013642/140‑1 (MQ=255)
                aGGCTAATCATGCTGAGACACAACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCa                                                                                                                         <  1:1068137/140‑1 (MQ=255)
                aGGCTAATCATGCTGAGACACAACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCa                                                                                                                         <  1:1171494/140‑1 (MQ=255)
                       tCATGCTGAGACACAACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGaa                                                                                                                  >  2:1983828/1‑140 (MQ=255)
                       tCATGCTGAGACACAACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGaa                                                                                                                  >  1:1232678/1‑140 (MQ=255)
                        cATGCTGAGACACAACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAag                                                                                                                 <  1:835395/140‑1 (MQ=255)
                            cTGAGACACAACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCa                                                                                                             >  1:1327028/1‑140 (MQ=255)
                               agaCACAACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGAt                                                                                                          >  1:2048259/1‑140 (MQ=255)
                                gaCACAACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATc                                                                                                         <  2:2146667/140‑1 (MQ=255)
                                    caACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGaaa                                                                                                     >  1:671301/1‑140 (MQ=255)
                                      aCGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGaaaaa                                                                                                   >  2:2203678/1‑140 (MQ=255)
                                      aCGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGaaaaa                                                                                                   >  2:650674/1‑140 (MQ=255)
                                        gTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAAcc                                                                                                 <  2:385877/140‑1 (MQ=255)
                                        gTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAAcc                                                                                                 <  2:1764413/140‑1 (MQ=255)
                                           ccTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGAc                                                                                              >  1:1470747/1‑140 (MQ=255)
                                             tgtgCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTg                                                                                            >  1:1540548/1‑140 (MQ=255)
                                              gtgCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGc                                                                                           <  1:1568069/140‑1 (MQ=255)
                                               tgCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCg                                                                                          >  2:884581/1‑140 (MQ=255)
                                               tgCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCg                                                                                          >  2:368439/1‑140 (MQ=255)
                                               tgCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCg                                                                                          >  1:2094083/1‑140 (MQ=255)
                                                  gACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGaa                                                                                       <  2:306312/140‑1 (MQ=255)
                                                   aCGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAAc                                                                                      >  2:237786/1‑140 (MQ=255)
                                                   aCGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAAc                                                                                      <  2:1336294/140‑1 (MQ=255)
                                                   aCGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAAc                                                                                      <  2:1876262/140‑1 (MQ=255)
                                                   aCGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAAc                                                                                      >  2:1874718/1‑140 (MQ=255)
                                                      ggATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGc                                                                                   >  1:372681/1‑140 (MQ=255)
                                                      ggATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGc                                                                                   >  2:1490760/1‑140 (MQ=255)
                                                           tGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAg                                                                              >  2:944093/1‑140 (MQ=255)
                                                               ccAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGAtgt                                                                          >  1:1116552/1‑140 (MQ=255)
                                                                 aGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAAc                                                                                      <  1:1965888/126‑1 (MQ=255)
                                                                 aGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAAc                                                                                      >  2:1965888/1‑126 (MQ=255)
                                                                 aGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGc                                                                        >  2:339485/1‑140 (MQ=255)
                                                                  gATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGaa                                                                                       <  2:494120/124‑1 (MQ=255)
                                                                  gATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGaa                                                                                       >  1:494120/1‑124 (MQ=255)
                                                                  gATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGcc                                                                       >  2:1713283/1‑140 (MQ=255)
                                                                  gATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGcc                                                                       >  1:962510/1‑140 (MQ=255)
                                                                  gATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGcc                                                                       >  2:206175/1‑140 (MQ=255)
                                                                  gATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGcc                                                                       >  1:1055306/1‑140 (MQ=255)
                                                                   aTCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAAc                                                                                      <  1:270517/124‑1 (MQ=255)
                                                                   aTCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGAtgtg                                                                         >  2:1597390/1‑137 (MQ=255)
                                                                   aTCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCt                                                                      >  2:2375664/1‑140 (MQ=255)
                                                                   aTCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCt                                                                      >  2:826162/1‑140 (MQ=255)
                                                                   aTCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCt                                                                      <  2:538191/140‑1 (MQ=255)
                                                                   aTCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCt                                                                      >  2:1361525/1‑140 (MQ=255)
                                                                   aTCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATCGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCt                                                                      >  1:1859368/1‑140 (MQ=255)
                                                                     cgccgcTTACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTg                                                                    <  1:1502279/140‑1 (MQ=255)
                                                                     cgccgcTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTg                                                                    <  2:1116552/140‑1 (MQ=255)
                                                                     cgccgcTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTg                                                                    <  1:24112/140‑1 (MQ=255)
                                                                     cgccgcTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTg                                                                    <  1:2203678/140‑1 (MQ=255)
                                                                     cgccgcTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTg                                                                    <  2:1327028/140‑1 (MQ=255)
                                                                     cgccgcTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTg                                                                    <  1:1415490/140‑1 (MQ=255)
                                                                     cgccgcTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTg                                                                    <  2:1540548/140‑1 (MQ=255)
                                                                     cgccgcTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTg                                                                    <  2:1474201/140‑1 (MQ=255)
                                                                       ccgcTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAg                                                                  >  2:1083542/1‑140 (MQ=255)
                                                                        cgcTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAAGTGCATCAGATGTGCCTTGAgg                                                                 >  2:2191418/1‑140 (MQ=255)
                                                                        cgcTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAgg                                                                 >  1:1102308/1‑140 (MQ=255)
                                                                             aCAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCt                                                                      <  1:1929546/130‑1 (MQ=255)
                                                                             aCAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTg                                                                    <  2:1401030/132‑1 (MQ=255)
                                                                             aCAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTg                                                                    >  1:445474/1‑132 (MQ=255)
                                                                              cAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGtggtgg                                                           >  2:129889/1‑140 (MQ=255)
                                                                               aaCGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGa                                                          <  2:1218457/140‑1 (MQ=255)
                                                                                  ggTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATcg                                                       >  1:1893376/1‑140 (MQ=255)
                                                                                   gTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATcgc                                                      <  1:1361525/140‑1 (MQ=255)
                                                                                   gTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATcgc                                                      <  2:2094083/140‑1 (MQ=255)
                                                                                    tttCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATcgcg                                                     <  1:237786/140‑1 (MQ=255)
                                                                                    tttCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATcgcg                                                     <  2:1232678/140‑1 (MQ=255)
                                                                                         aCTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTa                                                <  1:2316499/140‑1 (MQ=255)
                                                                                          cTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTaa                                               <  2:24514/140‑1 (MQ=255)
                                                                                            ttCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTaaaa                                             >  1:1051898/1‑140 (MQ=255)
                                                                                             tCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAg                                            <  2:1051898/140‑1 (MQ=255)
                                                                                             tCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAg                                            <  1:2191418/140‑1 (MQ=255)
                                                                                             tCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAg                                            >  2:1000944/1‑140 (MQ=255)
                                                                                                   catcGACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAag                                      >  1:30348/1‑140 (MQ=255)
                                                                                                       gACAATGAAATCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGAt                                  >  1:2052859/1‑140 (MQ=255)
                                                                                                               aaTCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCTGACGc                          >  2:474785/1‑140 (MQ=255)
                                                                                                                aTCTATTGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCTGACGCa                         >  1:1906828/1‑140 (MQ=255)
                                                                                                                      tGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCTGACGCAACTGGc                   >  1:158307/1‑140 (MQ=255)
                                                                                                                      tGGGATGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCTGACGCAACTGGc                   >  1:299263/1‑140 (MQ=255)
                                                                                                                          aTGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCTGACGCAACTGGCGATc               >  1:1874727/1‑140 (MQ=255)
                                                                                                                          aTGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCTGACGCAACTGGCGATc               >  1:1129442/1‑140 (MQ=255)
                                                                                                                          aTGAGAGTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCTGACGCAACTGGCGATc               >  1:1983897/1‑140 (MQ=255)
                                                                                                                             agagTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCTGACGCAACTGGCGATCccg            >  1:567781/1‑140 (MQ=255)
                                                                                                                             agagTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCTGACGCAACTGGCGATCccg            >  1:618994/1‑140 (MQ=255)
                                                                                                                             agagTCGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCTGACGCAACTGGCGATCccg            >  1:1275189/1‑140 (MQ=255)
                                                                                                                                  ggggCTTGCCGTTTTCCTCTGCGCCAGATTGAAGAGCAGATCGAAAACCCGACTGCGGAACTGCATCAGATGTGCCTGGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCTGACGCAACTGGCGATCCCGCCGtt       <  2:962510/139‑1 (MQ=255)
                                                                                                                                  ggggCTTGCCGTTTTCCTCTGCGCCAGATTGAAGAGCAGATCAAAAACCCGACTGCGGAACTGCATCAGATGTGCTTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCTGACGCAACTGGCGATCCCGCCGtt       <  2:1908381/139‑1 (MQ=255)
                                                                                                                                  cGGGCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCTGACGCAACTGGCGATCCCGCCGtt       >  1:95439/1‑140 (MQ=255)
                                                                                                                                   gggCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCTGACGCAACTGGCGATCCCGCCGTTg      >  1:1383888/1‑140 (MQ=255)
                                                                                                                                    ggCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCTGACGCAACTGGCGATCCCGCCGTTGt     >  1:2186925/1‑140 (MQ=255)
                                                                                                                                     gCTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCTGACGCAACTGGCGATCCCGCCGTTGTa    <  1:129889/140‑1 (MQ=255)
                                                                                                                                     gCTTGCCGTTTTACTCGGCGCAAGATTGAAGAGCAGATCAAAAACCCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGGGGACCGCGCGGTAAAAGATAAAGAGATCCTGACGCAACGGGCGATCCCGCCGTTGTa    <  2:1075433/140‑1 (MQ=255)
                                                                                                                                      cTTGCCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCTGACGCAACTGGCGATCCCGCCGTTGTAc   <  2:1543275/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                         
CCCGTGGGCATTGGGGAGGCTAATCATGCTGAGACACAACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTGACAACGGTTTCGACTTTCATATCATCGACAATGAAATCTATTGGGATGAGAGTCGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTGCGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTAAAAGATGAAGAGATCCTGACGCAACTGGCGATCCCGCCGTTGTACT  >  NC_000913/4413003‑4413277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A