Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,435,385 T→A D394V (GAT→GTT)  cpdB ← 2'3' cyclic nucleotide phosphodiesterase/3' nucleotidase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,435,3850TA100.0% 713.8 / NA 203D394V (GAT→GTT) cpdB2'3' cyclic nucleotide phosphodiesterase/3' nucleotidase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (95/108);  total (95/108)

Only 100 of 204 total aligned reads displayed.

AGAGATAAAGATCGGCGGCATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGATCGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGCTGACGAACTGGC  >  NC_000913/4435248‑4435520
                                                                                                                                         |                                                                                                                                       
agagATAAAGATCGGCGGCATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACg                                                                                                                                       >  1:925782/1‑140 (MQ=255)
 gagaTAAAGATCGGCGGCATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGc                                                                                                                                      >  1:104797/1‑140 (MQ=255)
 gagaTAAAGATCGGCGGCATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGc                                                                                                                                      <  2:12767/140‑1 (MQ=255)
  agaTAAAGATCGGCGGCATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGcc                                                                                                                                     <  1:1987609/140‑1 (MQ=255)
   gaTAAAGATCGGCGGCATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGccc                                                                                                                                    >  2:1160224/1‑140 (MQ=255)
    aTAAAGATCGGCGGCATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCt                                                                                                                                   >  1:95841/1‑140 (MQ=255)
    aTAAAGATCGGCGGCATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCt                                                                                                                                   <  2:506990/140‑1 (MQ=255)
    aTAAAGATCGGCGGCATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCt                                                                                                                                   >  2:1898435/1‑140 (MQ=255)
    aTAAAGATCGGCGGCATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCt                                                                                                                                   <  1:1347108/140‑1 (MQ=255)
       aaGATCGGCGGCATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGaa                                                                                                                                >  1:415893/1‑140 (MQ=255)
        aGATCGGCGGCATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAAt                                                                                                                               >  1:1374637/1‑140 (MQ=255)
           tCGGCGGCATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTa                                                                                                                            <  1:537200/140‑1 (MQ=255)
            cggcggCATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGcc                                                                                                                                     <  1:584072/130‑1 (MQ=255)
            cggcggCATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTaa                                                                                                                           >  1:1194277/1‑140 (MQ=255)
            cggcggCATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTaa                                                                                                                           >  2:834210/1‑140 (MQ=255)
             ggcggcATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAAt                                                                                                                          >  2:2014553/1‑140 (MQ=255)
              gcggcATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGc                                                                                                                                      >  1:654194/1‑127 (MQ=255)
              gcggcATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATg                                                                                                                         >  1:1973893/1‑140 (MQ=255)
              gcggcATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATg                                                                                                                         >  1:335753/1‑140 (MQ=255)
               cggcATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGc                                                                                                                        <  1:1160224/140‑1 (MQ=255)
               cggcATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGc                                                                                                                        >  1:1961205/1‑140 (MQ=255)
               cgacATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGc                                                                                                                        <  2:710115/137‑1 (MQ=255)
                     tACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACa                                                                                                                  <  2:48038/140‑1 (MQ=255)
                             gTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTc                                                                                                                      <  2:1560265/128‑1 (MQ=255)
                             gTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTc                                                                                                                      >  1:1560265/1‑128 (MQ=255)
                              tCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCtttt                                                                                                         >  2:1535251/1‑140 (MQ=255)
                                  cTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTgcg                                                                                                     >  1:283155/1‑140 (MQ=255)
                                  cTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTgcg                                                                                                     <  1:93330/140‑1 (MQ=255)
                                  cTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTgcg                                                                                                     <  2:1191310/140‑1 (MQ=255)
                                  cTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTgcg                                                                                                     <  2:196159/140‑1 (MQ=255)
                                    ggCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGcgcg                                                                                                   <  2:1132428/140‑1 (MQ=255)
                                    ggCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGcgcg                                                                                                   <  2:927049/140‑1 (MQ=255)
                                    ggCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGcgcg                                                                                                   <  1:1541855/140‑1 (MQ=255)
                                    ggCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGcgcg                                                                                                   >  2:384126/1‑140 (MQ=255)
                                                 cTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCt                                                                                      >  2:1823252/1‑140 (MQ=255)
                                                  tCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTg                                                                                     <  1:1457789/140‑1 (MQ=255)
                                                  tCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTg                                                                                     <  1:1173774/140‑1 (MQ=255)
                                                  tCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTg                                                                                     <  2:1194277/140‑1 (MQ=255)
                                                           cTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCgg                                                                            >  1:1797875/1‑140 (MQ=255)
                                                            ttGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGa                                                                           <  2:1448054/140‑1 (MQ=255)
                                                             tGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGAt                                                                          <  1:1765646/140‑1 (MQ=255)
                                                             tGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGAt                                                                          <  1:1683792/140‑1 (MQ=255)
                                                              gCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATc                                                                         >  2:1243264/1‑140 (MQ=255)
                                                              gCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATc                                                                         >  2:1699316/1‑140 (MQ=255)
                                                              gCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATc                                                                         >  1:818404/1‑140 (MQ=255)
                                                              gCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATc                                                                         >  1:1698243/1‑140 (MQ=255)
                                                              gCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATc                                                                         >  1:2348899/1‑140 (MQ=255)
                                                              gCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGACAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATc                                                                         >  2:2398393/1‑140 (MQ=255)
                                                               ccGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCg                                                                        >  2:1197086/1‑140 (MQ=255)
                                                               ccGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCg                                                                        >  2:2179185/1‑140 (MQ=255)
                                                                   gTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCt                                                                    >  1:404024/1‑140 (MQ=255)
                                                                       tttttGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCAc                                                                <  1:1327367/140‑1 (MQ=255)
                                                                       tttttGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCAc                                                                <  2:1615227/140‑1 (MQ=255)
                                                                         tttGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCa                                                              <  1:2315437/140‑1 (MQ=255)
                                                                            gCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAgcg                                                           <  1:1279519/140‑1 (MQ=255)
                                                                             cGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAgcgc                                                          >  2:1673654/1‑140 (MQ=255)
                                                                             cGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAgcgc                                                          <  1:1197086/140‑1 (MQ=255)
                                                                             cGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAgcgc                                                          <  2:104797/140‑1 (MQ=255)
                                                                              gACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGcc                                                         >  1:1864238/1‑140 (MQ=255)
                                                                              gACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGACAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGcc                                                         >  1:906715/1‑140 (MQ=255)
                                                                               accaccGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCa                                                        <  1:1535251/140‑1 (MQ=255)
                                                                               accaccGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCa                                                        <  2:283155/140‑1 (MQ=255)
                                                                                ccaccGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAg                                                       <  1:1898435/140‑1 (MQ=255)
                                                                                ccaccGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAg                                                       <  2:682091/140‑1 (MQ=255)
                                                                                 caccGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGa                                                      <  2:942321/140‑1 (MQ=255)
                                                                                 caccGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGa                                                      <  2:424666/140‑1 (MQ=255)
                                                                                 caccGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCAACAGCGCCAGa                                                      <  2:913789/140‑1 (MQ=255)
                                                                                 caccGACTTTAAACGGTGCGGCAGCTGAAAGCACCGACAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGa                                                      <  1:2398393/140‑1 (MQ=255)
                                                                                  accGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGAt                                                     <  1:1941030/140‑1 (MQ=255)
                                                                                  accGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGAt                                                     <  2:1926937/140‑1 (MQ=255)
                                                                                  accGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGAt                                                     <  1:1144178/140‑1 (MQ=255)
                                                                                  accGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGAt                                                     >  2:1874895/1‑140 (MQ=255)
                                                                                   ccGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATa                                                    <  2:2363499/140‑1 (MQ=255)
                                                                                    cGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAg                                                   >  2:146954/1‑140 (MQ=255)
                                                                                    cGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAg                                                   <  1:1007228/140‑1 (MQ=255)
                                                                                     gACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGc                                                  <  1:1243264/140‑1 (MQ=255)
                                                                                     gACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGc                                                  <  1:2141381/140‑1 (MQ=255)
                                                                                     gACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGc                                                  <  1:2179185/140‑1 (MQ=255)
                                                                                     gACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGc                                                  <  2:409580/140‑1 (MQ=255)
                                                                                      aCTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCt                                                 <  2:1943554/140‑1 (MQ=255)
                                                                                      aCTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCt                                                 >  2:771862/1‑140 (MQ=255)
                                                                                      aCTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCt                                                 <  1:850382/140‑1 (MQ=255)
                                                                                      aCTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCt                                                 <  2:335753/140‑1 (MQ=255)
                                                                                            aaCGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAg                                                             >  1:2383749/1‑122 (MQ=255)
                                                                                            aaCGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAg                                                             <  2:2383749/122‑1 (MQ=255)
                                                                                            aaCGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACat                                           >  1:1700084/1‑140 (MQ=255)
                                                                                              cGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACatat                                         >  1:434107/1‑140 (MQ=255)
                                                                                                 tGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGTCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGt                                      >  1:382666/1‑140 (MQ=255)
                                                                                                 tGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGt                                      >  1:696978/1‑140 (MQ=255)
                                                                                                 tGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGt                                      >  1:502810/1‑140 (MQ=255)
                                                                                                 tGCGGAAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCtataa                                             <  1:1590968/133‑2 (MQ=255)
                                                                                                  gCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCta                                                <  1:1116910/129‑1 (MQ=255)
                                                                                                           gAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGAttt                            <  1:1673654/140‑1 (MQ=255)
                                                                                                           gAAAGCACCGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGAttt                            <  1:2068384/140‑1 (MQ=255)
                                                                                                                   cGGCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTg                    >  1:73998/1‑140 (MQ=255)
                                                                                                                     gCAGTTTTGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGc                  <  2:1330725/140‑1 (MQ=255)
                                                                                                                         ttttGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGc              <  1:1510575/140‑1 (MQ=255)
                                                                                                                          tttGCCAGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGCt             >  2:592519/1‑140 (MQ=255)
                                                                                                                                aGATCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGCTGACGaa       <  2:2318956/140‑1 (MQ=255)
                                                                                                                                   tCCGGAACGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGCTGACGAACTg    <  2:247056/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
AGAGATAAAGATCGGCGGCATTACGGAAGGTCAACTGGCCTTTTTCCACCTCCACATAGCTTGCCGGGTCATTTTTGCGACCACCGACTTTAAACGGTGCGGCAGCTGAAAGCACCGGCAGTTTTGCCAGATCCGGATCGCCCTGAATGTAATGCTCGACATACGCTTTTTGCGCGTTGTTCACCACCTGCACGGTCGGATCGTCCTGCACCAGCGCCAGATAGCTATACATATTGTCGGCAGATTTACCGATTGGCTTGCTGACGAACTGGC  >  NC_000913/4435248‑4435520

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A