Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,443,061	A→G	N227S (AAC→AGC)	tamA →	translocation and assembly module subunit TamA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,443,061	0	A	G	100.0%	615.9 / NA	168	N227S (AAC→AGC)	tamA	translocation and assembly module subunit TamA
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (91/77); total (91/77)

Only 100 of 169 total aligned reads displayed.

ATTATAACAGTGGCGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAACCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGT  >  NC_000913/4442926‑4443196

aTTATAACAGTGGCGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGccgc                                                                                                                                     >  2:1342589/1‑140 (MQ=255)

  tataACAGTGGCGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGccgccg                                                                                                                                   >  2:2394785/1‑140 (MQ=255)

  tataACAGTGGCGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGccgccg                                                                                                                                   >  1:701137/1‑140 (MQ=255)

       cAGTGGCGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACttt                                                                                                                              >  2:1784416/1‑140 (MQ=255)

       cAGTGGCGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACttt                                                                                                                              >  2:1080859/1‑140 (MQ=255)

          tGGCGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTg                                                                                                                           >  1:2258853/1‑140 (MQ=255)

          tGGCGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTg                                                                                                                           >  2:1473551/1‑140 (MQ=255)

          tGGCGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTg                                                                                                                           >  1:1618322/1‑140 (MQ=255)

          tGGCGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTg                                                                                                                           >  2:2111539/1‑140 (MQ=255)

          tGGCGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTg                                                                                                                           >  2:2260985/1‑140 (MQ=255)

          tGGCGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTg                                                                                                                           >  1:1145203/1‑140 (MQ=255)

          tGGCGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTg                                                                                                                           >  1:681526/1‑140 (MQ=255)

          tGGCGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTg                                                                                                                           >  2:726430/1‑140 (MQ=255)

          tGGCGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTg                                                                                                                           >  1:2329124/1‑140 (MQ=255)

            gCGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCt                                                                                                                         <  2:2370260/140‑1 (MQ=255)

            gCGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCt                                                                                                                         >  1:1265635/1‑140 (MQ=255)

            gCGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCt                                                                                                                         >  1:1538109/1‑140 (MQ=255)

             cGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTa                                                                                                                        <  1:1342589/140‑1 (MQ=255)

             cGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTa                                                                                                                        <  2:1265635/140‑1 (MQ=255)

               aaCGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTa                                                                                                                        <  1:2356090/138‑1 (MQ=255)

               aaCGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTAcc                                                                                                                      >  1:1629317/1‑140 (MQ=255)

               aaCGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTAcc                                                                                                                      >  1:1332355/1‑140 (MQ=255)

                aCGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCg                                                                                                                     <  1:270598/140‑1 (MQ=255)

                 cGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCgg                                                                                                                    <  2:730747/140‑1 (MQ=255)

                  gTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGc                                                                                                                   <  2:1428173/140‑1 (MQ=255)

                    tACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCt                                                                                                                         >  2:2210037/1‑132 (MQ=255)

                    tACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCt                                                                                                                         <  1:2210037/132‑1 (MQ=255)

                    tACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTg                                                                                                                 >  1:760526/1‑140 (MQ=255)

                     aCCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTgg                                                                                                                >  2:153058/1‑140 (MQ=255)

                      ccGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGt                                                                                                               >  2:803844/1‑140 (MQ=255)

                       cGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGtt                                                                                                              <  2:1209395/140‑1 (MQ=255)

                       cGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGtt                                                                                                              >  2:892278/1‑140 (MQ=255)

                          tttGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTaa                                                                                                           <  2:1618322/140‑1 (MQ=255)

                          tttGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTaa                                                                                                           <  2:517066/140‑1 (MQ=255)

                            tGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACt                                                                                                         >  1:1035759/1‑140 (MQ=255)

                            tGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACt                                                                                                         >  1:420762/1‑140 (MQ=255)

                              ggCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCg                                                                                                       >  1:345410/1‑140 (MQ=255)

                              ggCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCg                                                                                                       >  2:2347628/1‑140 (MQ=255)

                                cATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCggt                                                                                                     >  1:1706012/1‑140 (MQ=255)

                                    tgACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCggtggtg                                                                                                 >  2:1874711/1‑140 (MQ=255)

                                      aCCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCggtggtggt                                                                                               <  2:1780506/140‑1 (MQ=255)

                                       ccTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGgtggtggtg                                                                                              <  2:539416/140‑1 (MQ=255)

                                        cTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGtggtggtgg                                                                                             <  2:1035759/140‑1 (MQ=255)

                                        cTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGtggtggtgg                                                                                             <  2:2256649/140‑1 (MQ=255)

                                             aaGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCca                                                                                        <  1:1132942/140‑1 (MQ=255)

                                             aaGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCca                                                                                        <  2:1145203/140‑1 (MQ=255)

                                             aaGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCca                                                                                        <  1:952338/140‑1 (MQ=255)

                                               ggATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCcaca                                                                                      <  2:1527515/140‑1 (MQ=255)

                                                gATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACaa                                                                                     >  2:1117736/1‑140 (MQ=255)

                                                 aTCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAAt                                                                                    >  1:1581640/1‑140 (MQ=255)

                                                  tCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTGCGAATGGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAAtt                                                                                   >  2:1648270/1‑140 (MQ=255)

                                                  tCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGGAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAAtt                                                                                   >  2:1952570/1‑140 (MQ=255)

                                                  tCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAAtt                                                                                   >  2:2355074/1‑140 (MQ=255)

                                                     caAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGa                                                                                >  1:2272381/1‑140 (MQ=255)

                                                           cgcgATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTc                                                                                          >  1:2383529/1‑124 (MQ=255)

                                                           cgcgATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAgc                                                                          >  1:193941/1‑140 (MQ=255)

                                                             cgATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCcaca                                                                                      <  1:1081739/126‑1 (MQ=255)

                                                             cgATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAgcgc                                                                        >  2:1093252/1‑140 (MQ=255)

                                                             cgATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAgcgc                                                                        >  1:2063605/1‑140 (MQ=255)

                                                              gATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAgcgcg                                                                       <  1:803844/140‑1 (MQ=255)

                                                                tGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGcgcgcg                                                                     >  1:1012413/1‑140 (MQ=255)

                                                                tGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGcgcgcg                                                                     <  1:532159/140‑1 (MQ=255)

                                                                tGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGcgcgcg                                                                     <  2:1100899/140‑1 (MQ=255)

                                                                    tACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGTGCGcgaaac                                                                 <  1:2099070/140‑1 (MQ=255)

                                                                     aCCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGcgaaacg                                                                <  1:852211/140‑1 (MQ=255)

                                                                     aCCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGcgaaacg                                                                <  1:1786960/140‑1 (MQ=255)

                                                                      ccTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGcgaaacga                                                               <  2:1663548/140‑1 (MQ=255)

                                                                        tGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGcgaaacgaaa                                                             >  1:1751198/1‑140 (MQ=255)

                                                                        tGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGcgaaacgaaa                                                             >  1:2038930/1‑140 (MQ=255)

                                                                          cAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGt                                                           >  2:1894962/1‑140 (MQ=255)

                                                                            aaaTCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTAt                                                         <  2:1581640/140‑1 (MQ=255)

                                                                            aaaTCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTAt                                                         <  1:1769109/140‑1 (MQ=255)

                                                                                cTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTAcc                                                     <  2:681526/140‑1 (MQ=255)

                                                                                 tGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCa                                                    >  1:1724214/1‑140 (MQ=255)

                                                                                 tGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGGGGCTCCACAATTTGGTAAAGGGCGCGAAACGAAAGGATTACCa                                                    >  2:1685232/1‑140 (MQ=255)

                                                                                   gTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGcgaaacgaa                                                              <  1:1709316/128‑1 (MQ=255)

                                                                                   gTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGcgaaacgaa                                                              >  2:1709316/1‑128 (MQ=255)

                                                                                     gCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGa                                                <  1:1097418/140‑1 (MQ=255)

                                                                                     gCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGa                                                <  2:2216328/140‑1 (MQ=255)

                                                                                                 gggCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGttt                                    >  1:2228013/1‑140 (MQ=255)

                                                                                                   gctaTGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCg                                          <  2:1483975/129‑1 (MQ=255)

                                                                                                   gCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCg                                          >  1:1483975/1‑132 (MQ=255)

                                                                                                   gCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTcg                                  >  1:1985707/1‑140 (MQ=255)

                                                                                                       tGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTcgccgc                              <  2:1332355/140‑1 (MQ=255)

                                                                                                       tGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTcgccgc                              <  2:1012413/140‑1 (MQ=255)

                                                                                                       tGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTcgccgc                              >  1:1392146/1‑140 (MQ=255)

                                                                                                       tGAGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTcgccgc                              <  1:1109154/140‑1 (MQ=255)

                                                                                                         aGTACGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGa                            <  1:1093252/140‑1 (MQ=255)

                                                                                                            aCGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACa                         <  2:2063723/140‑1 (MQ=255)

                                                                                                            aCGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACa                         <  1:2149907/140‑1 (MQ=255)

                                                                                                            aCGAATCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACa                         <  2:1278415/140‑1 (MQ=255)

                                                                                                                aTCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGaaa                     >  1:1436648/1‑140 (MQ=255)

                                                                                                                 tCGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGACTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGaaaa                    <  1:2111539/140‑1 (MQ=255)

                                                                                                                  cGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAac                   <  2:1809403/140‑1 (MQ=255)

                                                                                                                  cGAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAac                   <  2:2063605/140‑1 (MQ=255)

                                                                                                                   gAAAGATCTGGCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAaca                  >  1:1901303/1‑140 (MQ=255)

                                                                                                                             gCAGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAAc        <  2:345410/140‑1 (MQ=255)

                                                                                                                               aGAACTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCg      <  2:604985/140‑1 (MQ=255)

                                                                                                                                   cTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCggg    >  1:1436051/1‑138 (MQ=255)

                                                                                                                                   cTGAGCCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGt  <  1:1894962/140‑1 (MQ=255)

ATTATAACAGTGGCGAACGTTACCGCTTTGGGCATGTGACCTTTGAAGGATCACAAATCCGCGATGAATACCTGCAAAATCTGGTGCCGTTTAAAGAGGGCGATGAGTACGAATCGAAAGATCTGGCAGAACTGAACCGCCGACTTTCTGCTACCGGCTGGTTTAACTCGGTGGTGGTGGCTCCACAATTTGATAAAGCGCGCGAAACGAAAGTATTACCATTGACGGGCGTGGTTTCGCCGCGAACAGAAAACACCATCGAAACCGGGGT  >  NC_000913/4442926‑4443196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A