Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F28 I1 R1
|
258 |
142.3 |
4824480 |
99.1% |
4781059 |
138.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,534,210 |
T→C |
intergenic (‑157/+220) |
topAI ← / ← yjhZ |
KpLE2 phage‑like element; toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/KpLE2 phage‑like element; putative acetyltransferase YjhZ |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,534,210 | 0 | T | C | 100.0%
| 780.6
/ NA
| 212 | intergenic (‑157/+220) | topAI/yjhZ | KpLE2 phage‑like element; toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/KpLE2 phage‑like element; putative acetyltransferase YjhZ |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (102/110); total (102/110) |
Only 100 of 221 total aligned reads displayed.
ATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATG > NC_000913/4534074‑4534346
|
atcatGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgttgagctga < 1:1441386/140‑1 (MQ=255)
atcatGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgttgagctga > 1:1261334/1‑140 (MQ=255)
catGTGCAAAACGTGCAAACACTCCGCAGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGaaa < 2:1818195/140‑1 (MQ=255)
atGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAg > 1:2222347/1‑140 (MQ=255)
atGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAg > 1:1624439/1‑140 (MQ=255)
atGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAg > 1:784182/1‑140 (MQ=255)
atGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAg > 2:1011724/1‑140 (MQ=255)
atGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCACTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAg > 2:1267167/1‑140 (MQ=255)
tgtgCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAgg > 2:1552556/1‑140 (MQ=255)
tgCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTa > 2:1190098/1‑140 (MQ=255)
cAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTAtt > 2:677655/1‑140 (MQ=255)
aaaCGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAgg > 1:1098519/1‑134 (MQ=255)
aaCGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTAtttgc > 1:1974175/1‑138 (MQ=255)
aaCGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTAtttgc > 2:688361/1‑138 (MQ=255)
cGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCgg > 2:1909592/1‑140 (MQ=255)
tGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAg > 1:136765/1‑140 (MQ=255)
tGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAg < 2:1280881/140‑1 (MQ=255)
gCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGc > 2:1246710/1‑140 (MQ=255)
gCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGc > 1:1676314/1‑140 (MQ=255)
gCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGc > 2:425895/1‑140 (MQ=255)
aaCACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGaa < 2:2086976/140‑1 (MQ=255)
cacCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATAtt < 2:742109/140‑1 (MQ=255)
ccGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTaa < 2:322243/140‑1 (MQ=255)
ccGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTaa > 1:48625/1‑140 (MQ=255)
cgcgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCg > 2:2271525/1‑131 (MQ=255)
cgcgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCg < 1:2271525/131‑1 (MQ=255)
gcgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGaa < 1:1067230/132‑1 (MQ=255)
gcgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGaa > 2:1067230/1‑132 (MQ=255)
gcgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAaca < 1:2128924/140‑1 (MQ=255)
gcgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAaca < 1:1869288/140‑1 (MQ=255)
gcgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAaca < 1:976754/140‑1 (MQ=255)
cgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAacac < 1:1817885/140‑1 (MQ=255)
cgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAacac < 1:183414/140‑1 (MQ=255)
cgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAacac < 2:1782947/140‑1 (MQ=255)
cgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAacac < 2:48625/140‑1 (MQ=255)
cgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAacac < 1:1929657/140‑1 (MQ=255)
cgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAacac < 2:2054360/140‑1 (MQ=255)
ggTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACg < 1:1552556/140‑1 (MQ=255)
ggTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACg < 1:643426/140‑1 (MQ=255)
ggTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACg < 2:784182/140‑1 (MQ=255)
gtCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAata > 2:382756/1‑129 (MQ=255)
gtCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAacac < 1:516223/136‑1 (MQ=255)
tCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGt < 1:1011724/140‑1 (MQ=255)
ccGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGaa < 2:1873438/125‑1 (MQ=255)
gCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTtat > 1:2081146/1‑140 (MQ=255)
aTTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATag < 2:1363053/140‑1 (MQ=255)
ttCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAacac > 1:1830574/1‑129 (MQ=255)
ttCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAacac < 2:1830574/129‑1 (MQ=255)
ttCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATagg < 2:1460187/140‑1 (MQ=255)
ttCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATagg < 2:1624439/140‑1 (MQ=255)
ttCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATagg < 2:519771/140‑1 (MQ=255)
ttCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATagg < 1:2012524/140‑1 (MQ=255)
tCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATagga < 1:1190098/140‑1 (MQ=255)
cGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATaggag < 2:1539656/140‑1 (MQ=255)
tttCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACATGTAGTTATAGGAGGGa < 2:1974175/140‑1 (MQ=255)
cATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTc < 2:1849415/140‑1 (MQ=255)
cATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTc < 1:1350795/140‑1 (MQ=255)
cATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTc > 2:217452/1‑140 (MQ=255)
aTCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGaaa < 2:2222347/140‑1 (MQ=255)
aGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAg > 1:1780296/1‑140 (MQ=255)
tCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACATGTAGTTATAGGAGGGATATGTTTCAg < 2:1648440/129‑1 (MQ=255)
tCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAgtg > 1:260489/1‑140 (MQ=255)
tCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAgtg > 2:559944/1‑140 (MQ=255)
tCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAgtg > 1:1337141/1‑140 (MQ=255)
tCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAgtg > 2:1094848/1‑140 (MQ=255)
cGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGtgtg > 2:591263/1‑140 (MQ=255)
cGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGtgtg < 2:1767054/140‑1 (MQ=255)
gCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGAt < 2:260489/140‑1 (MQ=255)
gCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGAt < 2:2074046/140‑1 (MQ=255)
ccTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGaaa > 1:1127542/1‑130 (MQ=255)
ccTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATg < 1:62374/140‑1 (MQ=255)
gggAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAAtt < 1:1794841/140‑1 (MQ=255)
gggAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAAtt < 1:460200/140‑1 (MQ=255)
aaCTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGaa < 1:127599/140‑1 (MQ=255)
tGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATg > 1:2394947/1‑139 (MQ=255)
gATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGcc > 1:151317/1‑140 (MQ=255)
gATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGcc < 1:330915/140‑1 (MQ=255)
aTTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCa < 1:559944/140‑1 (MQ=255)
aTTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCa < 2:1124256/140‑1 (MQ=255)
aTCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAAcc > 1:599158/1‑140 (MQ=255)
aTCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAAcc > 2:2320586/1‑140 (MQ=255)
tgatTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTa < 1:737121/140‑1 (MQ=255)
gatTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTAc > 1:778594/1‑140 (MQ=255)
aTTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGaaa < 1:2148342/140‑1 (MQ=255)
tcCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAg < 2:1367986/138‑1 (MQ=255)
tcCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGc > 1:379359/1‑140 (MQ=255)
cAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAg > 2:2292469/1‑140 (MQ=255)
aGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGa < 2:778594/140‑1 (MQ=255)
aaGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACt > 2:844720/1‑140 (MQ=255)
aaGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACt > 1:927122/1‑140 (MQ=255)
aaGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAG‑AAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTg > 2:244381/1‑140 (MQ=255)
tCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGaca > 1:2289761/1‑133 (MQ=255)
tCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGa > 1:1877843/1‑140 (MQ=255)
tCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGa < 2:615405/140‑1 (MQ=255)
tCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGa < 2:1337141/140‑1 (MQ=255)
gggTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAAt < 1:425895/140‑1 (MQ=255)
gggTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAAt > 1:993101/1‑140 (MQ=255)
gggTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAAt < 2:19950/140‑1 (MQ=255)
gttgagctgaAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGc < 2:2399451/140‑1 (MQ=255)
gagctgaAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAATGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATg < 2:1676314/140‑1 (MQ=255)
|
ATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATG > NC_000913/4534074‑4534346
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
