Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F28 I1 R1
|
258 |
142.3 |
4824480 |
99.1% |
4781059 |
138.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,534,223 |
A→G |
intergenic (‑170/+207) |
topAI ← / ← yjhZ |
KpLE2 phage‑like element; toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/KpLE2 phage‑like element; putative acetyltransferase YjhZ |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,534,223 | 0 | A | G | 100.0%
| 722.0
/ NA
| 196 | intergenic (‑170/+207) | topAI/yjhZ | KpLE2 phage‑like element; toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/KpLE2 phage‑like element; putative acetyltransferase YjhZ |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (81/115); total (81/115) |
Only 100 of 197 total aligned reads displayed.
CGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATGTTGAAGTACGC > NC_000913/4534087‑4534357
|
tGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAg > 1:136765/1‑140 (MQ=255)
gCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGc > 1:634710/1‑140 (MQ=255)
gCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGc > 2:1246710/1‑140 (MQ=255)
gCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGc > 2:425895/1‑140 (MQ=255)
gCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGc > 1:1676314/1‑140 (MQ=255)
gCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGc < 2:1907688/140‑1 (MQ=255)
aaCACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGaa < 2:2086976/140‑1 (MQ=255)
cacacCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAata > 2:1346743/1‑140 (MQ=255)
cacCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATAtt < 1:1909592/140‑1 (MQ=255)
cacCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATAtt < 2:742109/140‑1 (MQ=255)
cacCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATAtt > 2:1818632/1‑140 (MQ=255)
acCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAGCTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTa > 2:257230/1‑140 (MQ=255)
acCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTa > 1:56453/1‑140 (MQ=255)
ccGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTaa < 2:720458/140‑1 (MQ=255)
ccGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTaa < 2:322243/140‑1 (MQ=255)
cgcgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCg < 1:2271525/131‑1 (MQ=255)
cgcgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAac > 1:1124256/1‑140 (MQ=255)
gcgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGaa < 1:1067230/132‑1 (MQ=255)
gcgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAaca < 1:976754/140‑1 (MQ=255)
cgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAacac < 1:1817885/140‑1 (MQ=255)
cgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAacac < 1:183414/140‑1 (MQ=255)
cgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAacac < 2:2054360/140‑1 (MQ=255)
cgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAacac < 2:48625/140‑1 (MQ=255)
ggTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACg < 2:784182/140‑1 (MQ=255)
ggTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACg < 2:881500/140‑1 (MQ=255)
ggTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACg < 1:1346743/140‑1 (MQ=255)
gtCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAata > 2:382756/1‑129 (MQ=255)
tCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGt < 1:1011724/140‑1 (MQ=255)
tCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGt < 2:2237956/140‑1 (MQ=255)
ccGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGaa > 1:1873438/1‑125 (MQ=255)
ccGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGaa < 2:1873438/125‑1 (MQ=255)
gCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTtat > 1:2081146/1‑140 (MQ=255)
aTTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATag < 2:28396/140‑1 (MQ=255)
aTTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATag < 2:1363053/140‑1 (MQ=255)
ttCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAacac > 1:1830574/1‑129 (MQ=255)
ttCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATagg < 2:519771/140‑1 (MQ=255)
ttCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATagg < 2:1624439/140‑1 (MQ=255)
ttCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATagg < 2:1460187/140‑1 (MQ=255)
tCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATagga < 2:1547853/140‑1 (MQ=255)
cGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATaggag > 1:1579379/1‑140 (MQ=255)
cGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATaggag < 2:1539656/140‑1 (MQ=255)
tttCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACATGTAGTTATAGGAGGGa < 2:1974175/140‑1 (MQ=255)
tttCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGa < 1:1290030/140‑1 (MQ=255)
cATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTc < 1:2339276/140‑1 (MQ=255)
cATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTc < 2:1849415/140‑1 (MQ=255)
aGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAg > 1:1780296/1‑140 (MQ=255)
tCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACATGTAGTTATAGGAGGGATATGTTTCAg < 2:1648440/129‑1 (MQ=255)
tCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAgtg > 1:99258/1‑140 (MQ=255)
tCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAgtg > 2:559944/1‑140 (MQ=255)
tCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAgtg > 1:260489/1‑140 (MQ=255)
tCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAgtg > 2:2187137/1‑140 (MQ=255)
tCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAgtg > 1:1950190/1‑140 (MQ=255)
cGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGtgtg > 2:591263/1‑140 (MQ=255)
cGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGtgtg < 2:1767054/140‑1 (MQ=255)
ccTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGaaa < 2:1127542/130‑1 (MQ=255)
ccTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATg > 1:1148892/1‑140 (MQ=255)
ccTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATg > 1:1855699/1‑140 (MQ=255)
cTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGt < 2:2081146/140‑1 (MQ=255)
aaaGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACtt < 2:1080904/140‑1 (MQ=255)
gggAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAAtt < 1:460200/140‑1 (MQ=255)
gggAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAAtt < 1:1794841/140‑1 (MQ=255)
cTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATg < 1:1242364/140‑1 (MQ=255)
cTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATg < 1:2252288/140‑1 (MQ=255)
tGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATg < 2:2394947/139‑1 (MQ=255)
tGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATg > 1:2394947/1‑139 (MQ=255)
gATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGcc < 1:791475/140‑1 (MQ=255)
gATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGcc < 1:330915/140‑1 (MQ=255)
aTTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCa < 1:361101/140‑1 (MQ=255)
aTTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCa < 2:1124256/140‑1 (MQ=255)
gatgatTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCAtt < 2:1780296/140‑1 (MQ=255)
tgatTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTa < 1:737121/140‑1 (MQ=255)
gatTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTAc > 1:778594/1‑140 (MQ=255)
gatTACATTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTAc > 1:1997049/1‑140 (MQ=255)
aTTCTCCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGaaa < 1:2148342/140‑1 (MQ=255)
tctcCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAg > 2:2406275/1‑140 (MQ=255)
tcCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAg < 2:1367986/138‑1 (MQ=255)
tcCAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGc > 1:379359/1‑140 (MQ=255)
cAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAg > 2:2292469/1‑140 (MQ=255)
cAGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAg > 1:508262/1‑140 (MQ=255)
aGCATCAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGa < 2:778594/140‑1 (MQ=255)
cAAAGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGaca < 1:1432937/140‑1 (MQ=255)
aaGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACt > 2:844720/1‑140 (MQ=255)
aaGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACt > 2:1302393/1‑140 (MQ=255)
aaGCCTCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACt > 1:927122/1‑140 (MQ=255)
tCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGa > 1:615405/1‑140 (MQ=255)
tCGGGTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGa < 2:615405/140‑1 (MQ=255)
gggTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAAt < 1:2129518/140‑1 (MQ=255)
gggTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAAt < 1:425895/140‑1 (MQ=255)
gggTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAAt < 2:19950/140‑1 (MQ=255)
gggTTGAGCTGAAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAAt > 1:999943/1‑140 (MQ=255)
gttgagctgaAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGc < 1:1267167/140‑1 (MQ=255)
tgagctgaAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGAAGAATGCAt < 2:2277218/140‑1 (MQ=255)
gagctgaAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAATGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATg < 2:1676314/140‑1 (MQ=255)
agctgaAAGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACTCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATGt > 2:2130852/4‑140 (MQ=255)
aaaGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATGTTGAAg > 1:664964/1‑140 (MQ=255)
aaaGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATGTTGAAg < 2:664964/140‑1 (MQ=255)
aaaGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATGTTGAAg < 2:1809769/140‑1 (MQ=255)
aaaGGTATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATGTTGAAg < 1:548680/140‑1 (MQ=255)
tATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATGTTGAAGTACGc > 1:2068156/1‑140 (MQ=255)
tATTTGCGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATGTTGAAGTACGc < 1:1545337/140‑1 (MQ=255)
|
CGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATGTTGAAGTACGC > NC_000913/4534087‑4534357
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
