Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	258	142.3	4824480	99.1%	4781059	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,556,939	T→C	G9G (GGT→GGC)	idlP →	iraD leader peptide

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,556,939	0	T	C	100.0%	477.4 / NA	132	G9G (GGT→GGC)	idlP	iraD leader peptide
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (65/67); total (65/67)

Only 100 of 138 total aligned reads displayed.

TTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGTGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCGCTGCGTAAATCGGTATGCAGC  >  NC_000913/4556802‑4557073

tttCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGgcgc                                                                                                                                      >  1:652043/1‑140 (MQ=255)

   ccTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCg                                                                                                                                   <  1:821087/140‑1 (MQ=255)

   ccTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCg                                                                                                                                   <  2:729316/140‑1 (MQ=255)

      gAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGgtg                                                                                                                                >  1:544419/1‑140 (MQ=255)

        aaaGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGtt                                                                                                                              <  2:334616/140‑1 (MQ=255)

        aaaGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGtt                                                                                                                              <  1:1457399/140‑1 (MQ=255)

              aGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGc                                                                                                                        <  2:575699/140‑1 (MQ=255)

              aGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGc                                                                                                                        <  2:1637110/140‑1 (MQ=255)

              aGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGc                                                                                                                        <  2:1868031/140‑1 (MQ=255)

               gTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCa                                                                                                                       <  1:2314774/140‑1 (MQ=255)

                     atTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGc                                                                                                                 >  2:2403729/1‑140 (MQ=255)

                     atTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGc                                                                                                                 >  2:1894578/1‑140 (MQ=255)

                      ttCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGAAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAG‑GGCGCCCGGTGTTCAGGGCAAGCCGCat                                                                                                               >  2:2188294/1‑140 (MQ=255)

                       tCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCat                                                                                                               >  2:1982208/1‑140 (MQ=255)

                       tCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCat                                                                                                               <  1:1893012/140‑1 (MQ=255)

                         aTAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCatat                                                                                                             <  1:496250/140‑1 (MQ=255)

                          tAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATg                                                                                                            >  2:1257063/1‑140 (MQ=255)

                             gCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTg                                                                                                         >  1:61106/1‑140 (MQ=255)

                                aGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTa                                                                                                      <  1:1440286/140‑1 (MQ=255)

                                aGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTa                                                                                                      <  2:346712/140‑1 (MQ=255)

                                aGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTa                                                                                                      <  2:1662413/140‑1 (MQ=255)

                                aGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTa                                                                                                      <  2:431168/140‑1 (MQ=255)

                                aGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTa                                                                                                      <  1:2299462/140‑1 (MQ=255)

                                 gTAAGGTTTTATAC‑TTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTa                                                                                                      <  1:2027909/138‑1 (MQ=255)

                                         ttATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTa                                                                                                      <  1:991867/131‑1 (MQ=255)

                                         ttATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAgg                                                                                             <  1:2052994/140‑1 (MQ=255)

                                          tataCTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGa                                                                                            <  1:1257063/140‑1 (MQ=255)

                                           ataCTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTa                                                                                                      <  2:172166/129‑1 (MQ=255)

                                           ataCTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAg                                                                                           >  1:779572/1‑140 (MQ=255)

                                           ataCTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAg                                                                                           >  1:1682251/1‑140 (MQ=255)

                                           ataCTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAg                                                                                           >  1:248064/1‑140 (MQ=255)

                                                ttGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTgcgc                                                                                      >  1:222625/1‑140 (MQ=255)

                                                ttGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTgcgc                                                                                      >  2:2029151/1‑140 (MQ=255)

                                                 tGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCa                                                                                     >  1:917838/1‑140 (MQ=255)

                                                 tGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGGGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCa                                                                                     >  1:908698/1‑140 (MQ=255)

                                                         ggATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCaaaa                                                                                  <  1:628844/135‑1 (MQ=255)

                                                         ggATTCAGGCCCGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCaaaa                                                                                  >  2:628844/1‑135 (MQ=255)

                                                           aTTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCg                                                                           >  1:331289/1‑140 (MQ=255)

                                                           aTTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCg                                                                           <  1:2403729/140‑1 (MQ=255)

                                                               aGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACaa                                                                       <  2:1401554/140‑1 (MQ=255)

                                                               aGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACaa                                                                       <  2:779572/140‑1 (MQ=255)

                                                               aGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACaa                                                                       <  1:1745016/140‑1 (MQ=255)

                                                                ggCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAAt                                                                      >  2:2331218/1‑140 (MQ=255)

                                                                ggCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAAt                                                                      >  2:565750/1‑140 (MQ=255)

                                                                 gCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAAt                                                                      <  2:1853326/139‑1 (MQ=255)

                                                                    tGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACt                                                                  <  2:1682251/140‑1 (MQ=255)

                                                                    tGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACt                                                                  <  1:1982208/140‑1 (MQ=255)

                                                                     gTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACtt                                                                 <  1:2171920/140‑1 (MQ=255)

                                                                      tctcAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGTGACAATCACTTc                                                                >  2:734681/1‑140 (MQ=255)

                                                                      tctcAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTc                                                                >  2:1787202/1‑140 (MQ=255)

                                                                      tctcAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTc                                                                >  2:240941/1‑140 (MQ=255)

                                                                      tctcAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTc                                                                >  1:1721760/1‑140 (MQ=255)

                                                                      tctcAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTc                                                                >  1:1629592/1‑140 (MQ=255)

                                                                      tctcAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCCAAACGTCAGGAGTGCGCAAAATGATGCGAc                                                                         <  1:2390783/131‑1 (MQ=255)

                                                                      tctcAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCCAAACGTCAGGAGTGCGCAAAATGATGCGAc                                                                         >  2:2390783/1‑131 (MQ=255)

                                                                       ctcAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCa                                                               <  2:948804/140‑1 (MQ=255)

                                                                        tcAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAg                                                              <  2:537039/140‑1 (MQ=255)

                                                                        tcAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAg                                                              <  2:61106/140‑1 (MQ=255)

                                                                                aCATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGtttt                                                      >  2:1553054/1‑140 (MQ=255)

                                                                                aCATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGtttt                                                      >  2:558079/1‑140 (MQ=255)

                                                                                aCATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGtttt                                                      >  1:829366/1‑140 (MQ=255)

                                                                                aCATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGtttt                                                      >  2:1751416/1‑140 (MQ=255)

                                                                                aCATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGtttt                                                      >  1:1380272/1‑140 (MQ=255)

                                                                                aCATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGtttt                                                      >  2:1981002/1‑140 (MQ=255)

                                                                                    ggATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAg                                                              >  1:127204/1‑128 (MQ=255)

                                                                                     gATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTg                                                 <  2:908698/140‑1 (MQ=255)

                                                                                      aTGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGa                                                >  2:10398/1‑140 (MQ=255)

                                                                                      aTGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGa                                                >  1:852141/1‑140 (MQ=255)

                                                                                          aaTGAACAAAGGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAAtt                                            >  2:1244026/1‑140 (MQ=255)

                                                                                          aaTGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAAtt                                            >  1:2188747/1‑140 (MQ=255)

                                                                                           aTGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAAttt                                           <  1:1787202/140‑1 (MQ=255)

                                                                                            tGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTc                                          >  2:2301449/1‑140 (MQ=255)

                                                                                              aaCAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAg                                        <  1:1553054/140‑1 (MQ=255)

                                                                                              aaCAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAg                                        >  1:1069248/1‑140 (MQ=255)

                                                                                              aaCAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAg                                        >  1:186173/1‑140 (MQ=255)

                                                                                               aCAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAgg                                       <  1:344197/140‑1 (MQ=255)

                                                                                                cAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGc                                      >  1:228781/1‑140 (MQ=255)

                                                                                                   aaGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAAt                                   >  2:56649/1‑140 (MQ=255)

                                                                                                           ggCTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTc                           >  1:1037644/1‑140 (MQ=255)

                                                                                                             cTATGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCAt                         >  2:1554258/1‑140 (MQ=255)

                                                                                                               aTGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCg                       <  1:10398/140‑1 (MQ=255)

                                                                                                               aTGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCg                       <  2:1069248/140‑1 (MQ=255)

                                                                                                               aTGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCg                       <  2:186173/140‑1 (MQ=255)

                                                                                                                tGGAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCGc                      >  1:1912295/1‑140 (MQ=255)

                                                                                                                 ggAAAATGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCGCt                     <  2:2347623/140‑1 (MQ=255)

                                                                                                                    aaaTGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCGCTGCg                  <  1:56649/140‑1 (MQ=255)

                                                                                                                      aTGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCGCTGCGTa                >  1:820167/1‑140 (MQ=255)

                                                                                                                      aTGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCGCTGCGTa                <  1:240267/140‑1 (MQ=255)

                                                                                                                       tGAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCGCTGCGTaa               >  1:48238/1‑140 (MQ=255)

                                                                                                                        gAGCATCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCGCTGCGTaaa              <  1:558079/140‑1 (MQ=255)

                                                                                                                            aTCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCGCTGCGTAAATCgg          >  2:920144/1‑140 (MQ=255)

                                                                                                                             tCAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCGCTGCGTAAATCGGt         <  1:2301449/140‑1 (MQ=255)

                                                                                                                              cAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCGCTGCGTAAATCGGTa        <  2:829366/140‑1 (MQ=255)

                                                                                                                              cAATACAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCGCTGCGTAAATCGGTa        <  2:248064/140‑1 (MQ=255)

                                                                                                                                  aCAGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCGCTGCGTAAATCGGTATGCa    <  1:2318605/140‑1 (MQ=255)

                                                                                                                                    aGTGGCGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCGCTGCGTAAATCGGTATGCAGc  >  2:1358026/1‑140 (MQ=255)

                                                                                                                                      tggcgCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACTATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCGCTGCGTAAATCg           <  2:2153464/129‑1 (MQ=255)

                                                                                                                                      tggcgCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCGCTGCGTa                >  1:777837/1‑124 (MQ=255)

                                                                                                                                      tggcgCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCGCTGCGTAAATCGGt         <  2:49264/131‑1 (MQ=255)

                                                                                                                                      tggcgCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGACAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCGCTGCGTAAATCg           >  1:2153464/1‑129 (MQ=255)

TTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTATGGAAAATGAGCATCAATACAGTGGTGCCCGGTGTTCAGGGCAAGCCGCATATGTTGCTAAACGTCAGGAGTGCGCAAAATGATGCGACAATCACTTCAGGCTGTTTTACCTGAAATTTCAGGCAATAAAACGTCATCGCTGCGTAAATCGGTATGCAGC  >  NC_000913/4556802‑4557073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A