Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 159 82.1 2830106 99.3% 2810295 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 53,858 A→G V282A (GTG→GCG)  surA ← peptidyl‑prolyl cis‑trans isomerase SurA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_00091353,8580AG100.0% 300.0 / NA 81V282A (GTG→GCG) surApeptidyl‑prolyl cis‑trans isomerase SurA
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (43/38);  total (43/38)

ACTCTTTCGCTGCGGCAGCAAAAGTCGTTTTACCACTCTTGATATCAGCAGCAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCACCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGCCTGGGCGAAGATCCCGGGCAACTCCTG  >  NC_000913/53721‑53994
                                                                                                                                         |                                                                                                                                        
aCTCTTTCGCTGCGGCAGCAAAAGTCGTTTTACCACTCTTGATATCAGCAGCAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGcc                                                                                                                                        >  2:107356/1‑140 (MQ=255)
aCTCTTTCGCTGCGGCAGCAAAAGTCGTTTTACCACTCTTGATATCAGCAGCAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGcc                                                                                                                                        >  2:120670/1‑140 (MQ=255)
 ctctTTCGCTGCGGCAGCAAAAGTCGTTTTACCACTCTTGATATCAGCAGCAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCg                                                                                                                                       <  2:983282/140‑1 (MQ=255)
   ctTTCGCTGCGGCAGCAAAAGTCGTTTTACCACTCTTGATATCAGCAGCAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCgag                                                                                                                                     <  2:923150/140‑1 (MQ=255)
      tCGCTGCGGCAGCAAAAGTCGTTTTACCACTCTTGATATCAGCAGCAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGGTCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGata                                                                                                                                  >  2:1231802/1‑140 (MQ=255)
           gCGGCAGCAAAAGTCGTTTTACCACTCTTGATATCAGCAGCAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATAttttt                                                                                                                             >  1:252385/1‑140 (MQ=255)
              gcagcaAAAGTCGTTTTACCACTCTTGATATCAGCAGCAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCt                                                                                                                          >  2:538268/1‑140 (MQ=255)
                      aGTCGTTTTACCACTCTTGATATCAGCAGCAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTcgccgc                                                                                                                  >  2:1238402/1‑140 (MQ=255)
                          gTTTTACCACTCTTGATATCAGCAGCAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAg                                                                                                              >  1:1008368/1‑140 (MQ=255)
                          gTTTTACCACTCTTGATATCAGCAGCAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAg                                                                                                              <  1:418026/140‑1 (MQ=255)
                             ttACCACTCTTGATATCAGCAGCAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTc                                                                                                           >  2:355957/1‑140 (MQ=255)
                                      ttGATATCAGCAGCAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACttt                                                                                                  <  2:1008368/140‑1 (MQ=255)
                                      ttGATATCAGCAGCAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACttt                                                                                                  <  1:538268/140‑1 (MQ=255)
                                        gATATCAGCAGCAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCa                                                                                                <  1:854317/140‑1 (MQ=255)
                                         atatCAGCAGCAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAg                                                                                               >  1:749317/1‑140 (MQ=255)
                                              agcagcAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAatat                                                                                          >  2:192493/1‑140 (MQ=255)
                                              agcagcAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAatat                                                                                          >  1:81785/1‑140 (MQ=255)
                                              agcagcAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAatat                                                                                          >  2:1379054/1‑140 (MQ=255)
                                              agcagcAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAatat                                                                                          >  1:1273956/1‑140 (MQ=255)
                                              agcagcAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAatat                                                                                          >  1:162018/1‑140 (MQ=255)
                                                cagcaATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATgg                                                                                        >  2:448620/1‑140 (MQ=255)
                                                cagcaATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATgg                                                                                        >  2:1245895/1‑140 (MQ=255)
                                                cagcaATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATgg                                                                                        >  1:178622/1‑140 (MQ=255)
                                                   caATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAg                                                                                     <  1:448620/140‑1 (MQ=255)
                                                          ttCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGcc                                                                                   <  2:1185144/135‑1 (MQ=255)
                                                          ttCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGcc                                                                                   >  1:1185144/1‑135 (MQ=255)
                                                          ttCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCaa                                                                                 >  1:655906/1‑137 (MQ=255)
                                                          ttCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCaa                                                                                 <  2:655906/137‑1 (MQ=255)
                                                          ttCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGc                                                                              >  2:462269/1‑140 (MQ=255)
                                                               gTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGaa                                                                         <  2:622360/140‑1 (MQ=255)
                                                                    acacGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAAt                                                                    <  1:25663/140‑1 (MQ=255)
                                                                    acacGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAAt                                                                    <  1:1245895/140‑1 (MQ=255)
                                                                    acacGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAAt                                                                    <  2:1225869/140‑1 (MQ=255)
                                                                    acacGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAAt                                                                    <  1:459113/140‑1 (MQ=255)
                                                                         ggCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGc                                                               <  1:748463/140‑1 (MQ=255)
                                                                               ttCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCcaacaa                                                         <  2:316892/140‑1 (MQ=255)
                                                                               ttCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCcaacaa                                                         <  1:462269/140‑1 (MQ=255)
                                                                                    cagtcaTGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCg                                                    >  2:854509/1‑140 (MQ=255)
                                                                                    cagtcaTGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCg                                                    >  2:802327/1‑140 (MQ=255)
                                                                                    cagtcaTGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCg                                                    >  2:164534/1‑140 (MQ=255)
                                                                                    cagtcaTGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCg                                                    >  2:1044283/1‑140 (MQ=255)
                                                                                    cagtcaTGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCg                                                    >  1:884865/1‑140 (MQ=255)
                                                                                         aTGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCttt                                               >  2:770585/1‑140 (MQ=255)
                                                                                         aTGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCttt                                               >  2:426486/1‑140 (MQ=255)
                                                                                            aTCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTttctt                                            >  1:1064877/1‑140 (MQ=255)
                                                                                              cGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTcg                                          <  2:749317/140‑1 (MQ=255)
                                                                                              cGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTcg                                          <  2:884865/140‑1 (MQ=255)
                                                                                                gCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTcgcg                                        <  1:661348/140‑1 (MQ=255)
                                                                                                 cGACGGTTTCAGCAGAATATGGCGAGCTTGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCgg                                       >  2:642527/1‑140 (MQ=255)
                                                                                                 cGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTcgcg                                        >  1:128774/1‑139 (MQ=255)
                                                                                                 cGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTcgcg                                        <  2:128774/139‑1 (MQ=255)
                                                                                                 cGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCgg                                       >  2:247778/1‑140 (MQ=255)
                                                                                                 cGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCgg                                       <  2:369507/140‑1 (MQ=255)
                                                                                                  gACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGt                                      <  2:1064877/140‑1 (MQ=255)
                                                                                                    cGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGc                                    >  2:1023819/1‑140 (MQ=255)
                                                                                                     ggTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCt                                   >  1:1368178/1‑140 (MQ=255)
                                                                                                            gcagAATATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGcc                            <  1:1238402/140‑1 (MQ=255)
                                                                                                                aaTATGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGCCTggg                        >  2:338725/1‑140 (MQ=255)
                                                                                                                  tatGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCTGTGCTTAATGCCTGGGCg                      >  2:100903/1‑140 (MQ=255)
                                                                                                                  tatGGCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGCCTGGGCg                      >  1:707550/1‑140 (MQ=255)
                                                                                                                     ggCGAGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGCCTGGGCGAAg                   >  1:667723/1‑140 (MQ=255)
                                                                                                                         aGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGc                             <  1:1039592/126‑1 (MQ=255)
                                                                                                                         aGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGc                             >  2:1039592/1‑126 (MQ=255)
                                                                                                                         aGCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGCCTGGGCGAAGATcc               <  1:1231802/140‑1 (MQ=255)
                                                                                                                          gCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGcc                            >  1:510629/1‑126 (MQ=255)
                                                                                                                          gCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGcc                            <  1:192198/126‑1 (MQ=255)
                                                                                                                          gCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGcc                            <  2:510629/126‑1 (MQ=255)
                                                                                                                          gCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGcc                            >  2:192198/1‑126 (MQ=255)
                                                                                                                          gCATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGCCTGGGCGAAGATccc              >  2:136499/1‑140 (MQ=255)
                                                                                                                           cATGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGCCTGGGCGAAGATCCCg             >  1:665267/1‑140 (MQ=255)
                                                                                                                             tGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGCCTGGGCGAAGATCCCggg           <  1:1379054/140‑1 (MQ=255)
                                                                                                                             tGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGCCTGGGCGAAGATCCCggg           <  1:136499/140‑1 (MQ=255)
                                                                                                                             tGAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGCCTGGGCGAAGATCCCggg           <  1:107356/140‑1 (MQ=255)
                                                                                                                              gAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGCCTGGGCGAAGATCCCGGGc          <  1:770585/140‑1 (MQ=255)
                                                                                                                              gAACTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGCCTGGGCGAAGATCCCGGGc          <  2:1368178/140‑1 (MQ=255)
                                                                                                                                aCTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGCCTGGGCGAAGATCCCGGGCaa        <  2:162018/140‑1 (MQ=255)
                                                                                                                                aCTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGCCTGGGCGAAGATCCCGGGCaa        <  2:707550/140‑1 (MQ=255)
                                                                                                                                aCTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGCCTGGGCGAAGATCCCGGGCaa        <  1:802327/140‑1 (MQ=255)
                                                                                                                                aCTTCGGTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGCCTGGGCGAAGATCCCGGGCaa        <  1:1326410/140‑1 (MQ=255)
                                                                                                                                     ggTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGCCTGGGCGAAGATCCCGGGCAACTCCt   <  1:192493/140‑1 (MQ=255)
                                                                                                                                      gTCGCCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGCCTGGGCGAAGATCCCGGGCAACTCCTg  >  2:94997/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                        
ACTCTTTCGCTGCGGCAGCAAAAGTCGTTTTACCACTCTTGATATCAGCAGCAATCTGTTCCAGTTTCACACGGGCCTGTTCGTCAGTCATGATCGGCGACGGTTTCAGCAGAATATGGCGAGCATGAACTTCGGTCACCGAGATATTTTTGCTTTCGCCGCGCAGGTCGTTAACTTTCAGAATATGGAAGCCAACGCCGGAACGAATCGGGCCAACAATGTCGCCTTTCTTCGCGGTGCTTAATGCCTGGGCGAAGATCCCGGGCAACTCCTG  >  NC_000913/53721‑53994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A