Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 159 82.1 2830106 99.3% 2810295 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 206,530 A→G M469V (ATG→GTG)  dnaE → DNA polymerase III subunit alpha

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913206,5300AG100.0% 332.8 / NA 90M469V (ATG→GTG) dnaEDNA polymerase III subunit alpha
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (51/39);  total (51/39)

GTCGTGATGCGGTATCGCAGATCATCACCTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGATGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCGTAACGCCGGTAAGCACGCCGGT  >  NC_000913/206393‑206664
                                                                                                                                         |                                                                                                                                      
gTCGTGATGCGGTATCGCAGATCATCACCTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTg                                                                                                                                      >  1:818814/1‑140 (MQ=255)
 tCGTGATGCGGTATCGCAGATCATCACCTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGa                                                                                                                                     >  2:4187/1‑140 (MQ=255)
    tGATGCGGTATCGCAGATCATCACCTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGc                                                                                                                                  >  1:165367/1‑140 (MQ=255)
    tGATGCGGTATCGCAGATCATCACCTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGc                                                                                                                                  >  2:856920/1‑140 (MQ=255)
    tGATGCGGTATCGCAGATCATCACCTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGc                                                                                                                                  >  1:1306686/1‑140 (MQ=255)
    tGATGCGGTATCGCAGATCATCACCTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGc                                                                                                                                  <  1:1260841/140‑1 (MQ=255)
     gATGCGGTATCGCAGATCATCACCTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCt                                                                                                                                 >  2:820527/1‑140 (MQ=255)
     gATGCGGTATCGCAGATCATCACCTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCt                                                                                                                                 >  2:736400/1‑140 (MQ=255)
      aTGCGGTATCGCAGATCATCACCTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTg                                                                                                                                >  2:79839/1‑140 (MQ=255)
           gTATCGCAGATCATCACCTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGaa                                                                                                                           >  2:278001/1‑140 (MQ=255)
           gTATCGCAGATCATCACCTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGaa                                                                                                                           >  1:1282837/1‑140 (MQ=255)
            tATCGCAGATCATCACCTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGaaa                                                                                                                          <  2:165367/140‑1 (MQ=255)
                 cAGATCATCACCTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGtt                                                                                                                     >  2:987705/1‑140 (MQ=255)
                    atcatcACCTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGa                                                                                                                  >  2:724091/1‑140 (MQ=255)
                      catcaCCTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAag                                                                                                                >  2:1051536/1‑140 (MQ=255)
                       atcaCCTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAagc                                                                                                               <  1:1080240/140‑1 (MQ=255)
                        tcaCCTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAagcc                                                                                                              <  1:1351044/140‑1 (MQ=255)
                         caCCTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAagccg                                                                                                             >  2:1003208/1‑140 (MQ=255)
                         caCCTTCGGTACAATGGCGGCGAAAGCGGAGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGAATCTCGAAACTGATCCCGCCCGATCCGGGGGGGACGCTGGCGAAAGCGTTTGAagccg                                                                                                             >  1:1071173/1‑140 (MQ=255)
                            cTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAagccgagc                                                                                                          >  1:731272/1‑140 (MQ=255)
                             ttCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAagccgagcc                                                                                                         >  1:76268/1‑140 (MQ=255)
                              tCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAagccgagccg                                                                                                        >  1:1202192/1‑140 (MQ=255)
                               cGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGc                                                                                                       >  1:279114/1‑140 (MQ=255)
                                ggTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCTAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCa                                                                                                      >  1:773412/1‑140 (MQ=255)
                                ggTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCa                                                                                                      >  1:1089716/1‑140 (MQ=255)
                                ggTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCa                                                                                                      >  1:1119498/1‑140 (MQ=255)
                                   aCAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCt                                                                                                   <  2:201755/140‑1 (MQ=255)
                                     aaTGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGc                                                                                                 <  1:278001/140‑1 (MQ=255)
                                     aaTGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGc                                                                                                 <  2:818814/140‑1 (MQ=255)
                                      aTGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGcc                                                                                                >  2:58846/1‑140 (MQ=255)
                                       tGGCGGCGAAAGGGGTGCCCCGCGACGTAGGCCGCGTGCTGGGGCATCTGTACGGGTTTGTCGATCGTATCTCGAACCTGACCCCGCCCGTTCGGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCg                                                                                               <  2:1071173/140‑1 (MQ=255)
                                       tGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCg                                                                                               <  1:4187/140‑1 (MQ=255)
                                       tGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCg                                                                                               <  1:26881/140‑1 (MQ=255)
                                       tGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCg                                                                                               >  1:882555/1‑140 (MQ=255)
                                          cggcgAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGaa                                                                                            >  2:734887/1‑140 (MQ=255)
                                          cggcgAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGGGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGaa                                                                                            >  2:611064/1‑140 (MQ=255)
                                            gcgAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAAt                                                                                          >  1:55306/1‑140 (MQ=255)
                                            gcgAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAAt                                                                                          >  1:260748/1‑140 (MQ=255)
                                            gcgAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAAt                                                                                          >  1:1255895/1‑140 (MQ=255)
                                               aaaGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTa                                                                                       <  2:731272/140‑1 (MQ=255)
                                                 aGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACg                                                                                     <  2:76268/140‑1 (MQ=255)
                                                   cGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGaa                                                                                   >  1:893869/1‑140 (MQ=255)
                                                    ggTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAg                                                                                  <  1:734887/140‑1 (MQ=255)
                                                    ggTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAg                                                                                  <  2:1202192/140‑1 (MQ=255)
                                                           cgcgACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATga                                                                           <  2:55306/140‑1 (MQ=255)
                                                           cgcgACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATga                                                                           <  2:893869/140‑1 (MQ=255)
                                                           cgcgACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATga                                                                           <  1:151142/140‑1 (MQ=255)
                                                                 gTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGt                                                                     >  1:319924/1‑140 (MQ=255)
                                                                   aGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAGCTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTa                                                                   <  2:929475/140‑1 (MQ=255)
                                                                       cgcgTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGgc                                                               <  2:802293/140‑1 (MQ=255)
                                                                       cgcgTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGgc                                                               <  2:1306686/140‑1 (MQ=255)
                                                                        gcgTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGgcg                                                              <  2:436796/140‑1 (MQ=255)
                                                                        gcgTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGgcg                                                              <  2:410039/140‑1 (MQ=255)
                                                                        gcgTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGgcg                                                              <  2:882555/140‑1 (MQ=255)
                                                                          gTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCt                                                            <  2:1255895/140‑1 (MQ=255)
                                                                                    aTCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATg                                                  >  1:214144/1‑140 (MQ=255)
                                                                                     tCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCt                                                            <  2:909400/129‑1 (MQ=255)
                                                                                     tCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCt                                                            >  1:909400/1‑129 (MQ=255)
                                                                                     tCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATgg                                                 >  1:1409836/1‑140 (MQ=255)
                                                                                         tACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGgcgcg                                             <  2:1089716/140‑1 (MQ=255)
                                                                                         tACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGgcgcg                                             <  1:856920/140‑1 (MQ=255)
                                                                                           cGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCa                                           >  2:1258513/1‑140 (MQ=255)
                                                                                           cGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCa                                           <  2:1409836/140‑1 (MQ=255)
                                                                                             gCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCaaa                                         <  1:950992/140‑1 (MQ=255)
                                                                                              cTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAAc                                        <  2:279114/140‑1 (MQ=255)
                                                                                               tttGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACt                                       <  1:1262347/140‑1 (MQ=255)
                                                                                                ttGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTg                                      >  1:156345/1‑140 (MQ=255)
                                                                                                  gTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGa                                    <  1:309455/140‑1 (MQ=255)
                                                                                                   tCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGaa                                   >  2:1123166/1‑140 (MQ=255)
                                                                                                          tATCTCGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCa                            >  1:1266423/1‑140 (MQ=255)
                                                                                                             ctcGAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCAccc                         >  1:673133/1‑140 (MQ=255)
                                                                                                                gAAACTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCGTa                      <  1:1123166/140‑1 (MQ=255)
                                                                                                                 aaaCTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAggg                                >  1:1046969/1‑129 (MQ=255)
                                                                                                                 aaaCTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAggg                                <  2:1046969/129‑1 (MQ=255)
                                                                                                                 aaaCTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCGTaa                     >  2:670035/1‑140 (MQ=255)
                                                                                                                 aaaCTGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCGTaa                     >  1:1122652/1‑140 (MQ=255)
                                                                                                                     tGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCGTAACGcc                 >  2:487018/1‑140 (MQ=255)
                                                                                                                     tGATCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCGTAACGcc                 >  1:911364/1‑140 (MQ=255)
                                                                                                                       aTCCCGCCCGATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCGTAACGCCgg               >  1:773928/1‑140 (MQ=255)
                                                                                                                            gcccgATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCGTAACGCCGGTAAGc          >  2:499375/1‑140 (MQ=255)
                                                                                                                            gcccgATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCGTAACGCCGGTAAGc          >  2:1049697/1‑140 (MQ=255)
                                                                                                                            gcccgATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCGTAACGCCGGTAAGc          >  1:1074309/1‑140 (MQ=255)
                                                                                                                             cccgATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCg                        <  1:397973/125‑1 (MQ=255)
                                                                                                                             cccgATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCg                        >  2:397973/1‑125 (MQ=255)
                                                                                                                             cccgATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCGTAACGCCGGTAAGCa         <  1:820527/140‑1 (MQ=255)
                                                                                                                              ccgATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCGTAACGCCGGTAAGCAc        >  1:1275785/1‑140 (MQ=255)
                                                                                                                                gATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCGTAACGCCGGTAAGCACGc      <  2:1119498/140‑1 (MQ=255)
                                                                                                                                gATCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCGTAACGCCGGTAAGCACGc      <  1:487018/140‑1 (MQ=255)
                                                                                                                                 aTCCGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCAGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCGTAACGCCGGTAAGCACGcc     >  2:1261820/1‑140 (MQ=255)
                                                                                                                                   ccGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCGTAACGCCGGTAAGCACGCCgg   <  1:987705/140‑1 (MQ=255)
                                                                                                                                    cGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCGTAACGCCGGTAAGCACGCCggt  <  2:908351/140‑1 (MQ=255)
                                                                                                                                    cGGGGGTGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCGTAACGCCGGTAAGCACGCCggt  <  2:214144/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                      
GTCGTGATGCGGTATCGCAGATCATCACCTTCGGTACAATGGCGGCGAAAGCGGTGATCCGCGACGTAGGCCGCGTGCTGGGGCATCCGTACGGCTTTGTCGATCGTATCTCGAAACTGATCCCGCCCGATCCGGGGATGACGCTGGCGAAAGCGTTTGAAGCCGAGCCGCAGCTGCCGGAAATCTACGAAGCGGATGAAGAAGTTAAGGCGCTGATCGACATGGCGCGCAAACTGGAAGGGGTCACCCGTAACGCCGGTAAGCACGCCGGT  >  NC_000913/206393‑206664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A