Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	159	82.1	2830106	99.3%	2810295	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,419,486	G→A	intergenic (‑30/+279)	ydaG ← / ← racR	Rac prophage; uncharacterized protein YdaG/Rac prophage; DNA‑binding transcriptional repressor RacR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,419,486	0	G	A	100.0%	430.1 / NA	121	intergenic (‑30/+279)	ydaG/racR	Rac prophage; uncharacterized protein YdaG/Rac prophage; DNA‑binding transcriptional repressor RacR
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (76/45); total (76/45)

Only 100 of 127 total aligned reads displayed.

TTCTGCCTGCCAGAGATCCCAGTCGTTGCTGCGTAAAGCCTGCACAGCCTGGTTGTAAGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGGAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGCGGGGTGGGTGGTATGCT  >  NC_000913/1419349‑1419622

ttCTGCCTGCCAGAGATCCCAGTCGTTGCTGCGTAAAGCCTGCACAGCCTGGTTGTAAGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGaaa                                                                                                                                        >  1:100095/1‑140 (MQ=255)

ttCTGCCTGCCAGAGATCCCAGTCGTTGCTGCGTAAAGCCTGCACAGCCTGGTTGTAAGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGaaa                                                                                                                                        >  1:654027/1‑140 (MQ=255)

 tCTGCCTGCCAGAGATCCCAGTCGTTGCTGCGTAAAGCCTGCACAGCCTGGTTGTAAGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAaac                                                                                                                                       >  1:1345120/1‑140 (MQ=255)

  ctgcctgcCAGAGATCCCAGTCGTTGCTGCGTAAAGCCTGCACAGCCTGGTTGTAAGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAaact                                                                                                                                      >  1:636224/1‑140 (MQ=255)

  ctgcctgcCAGAGATCCCAGTCGTTGCTGCGTAAAGCCTGCACAGCCTGGTTGTAAGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAaact                                                                                                                                      <  1:450592/140‑1 (MQ=255)

          cAGAGATCCCAGTCGTTGCTGCGTAAAGCCTGCACAGCCTGGTTGTAAGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAActgctg                                                                                                                              >  2:710497/1‑140 (MQ=255)

          cAGAGATCCCAGTCGTTGCTGCGTAAAGCCTGCACAGCCTGGTTGTAAGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAActgctg                                                                                                                              <  2:1345120/140‑1 (MQ=255)

                         ttGCTGCGTAAAGCCTGCACAGCCTGGTTGTAAGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGa                                                                                                               >  1:996728/1‑140 (MQ=255)

                               cGTAAAGCCTGCACAGCCTGGTTGTAAGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCccg                                                                                                         <  1:1072702/140‑1 (MQ=255)

                               cGTAAAGCCTGCACAGCCTGGTTGTAAGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCccg                                                                                                         <  2:31540/140‑1 (MQ=255)

                                 tAAAGCCTGCACAGCCTGGTTGTAAGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCccgcc                                                                                                       >  1:838960/1‑140 (MQ=255)

                                    aGCCTGCACAGCCTGGTTGTAAGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTc                                                                                                    <  1:1340579/140‑1 (MQ=255)

                                               ccTGGTTGTAAGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCccg                                                                                                         >  1:855025/1‑124 (MQ=255)

                                               ccTGGTTGTAAGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCccg                                                                                                         <  2:855025/124‑1 (MQ=255)

                                               ccTGGTTGTAAGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACg                                                                                         >  1:774853/1‑140 (MQ=255)

                                               ccTGGTTGTAAGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACg                                                                                         >  1:271435/1‑140 (MQ=255)

                                                       tAAGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGggc                                                                                 >  2:1353762/1‑140 (MQ=255)

                                                        aaGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGggct                                                                                <  2:258871/140‑1 (MQ=255)

                                                         aGTGATACCGCAACACTCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGggctg                                                                               >  2:766212/1‑140 (MQ=255)

                                                         aGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACTCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGggctg                                                                               >  2:1405356/1‑140 (MQ=255)

                                                         aGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCggg                                                                                  >  2:1132722/1‑137 (MQ=255)

                                                         aGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCggg                                                                                  <  1:1132722/137‑1 (MQ=255)

                                                         aGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGggctg                                                                               >  2:609541/1‑140 (MQ=255)

                                                         aGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGggctg                                                                               >  1:1198848/1‑140 (MQ=255)

                                                          gTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCCCTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGggctgg                                                                              <  2:271435/140‑1 (MQ=255)

                                                          gTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGggctgg                                                                              <  1:1264793/140‑1 (MQ=255)

                                                           tGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGggctggc                                                                             >  1:826377/1‑140 (MQ=255)

                                                             aTACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGcc                                                                                       <  1:923446/128‑1 (MQ=255)

                                                             aTACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGcc                                                                                       >  2:923446/1‑128 (MQ=255)

                                                             aTACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCggg                                                                                  >  1:677403/1‑133 (MQ=255)

                                                             aTACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCggg                                                                                  <  2:677403/133‑1 (MQ=255)

                                                             aTACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTa                                                                           >  1:4742/1‑140 (MQ=255)

                                                             aTACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTa                                                                           >  1:1237215/1‑140 (MQ=255)

                                                             aTACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTa                                                                           >  2:1035658/1‑140 (MQ=255)

                                                             aTACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTa                                                                           >  1:791625/1‑140 (MQ=255)

                                                             aTACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTa                                                                           >  2:1128047/1‑140 (MQ=255)

                                                             aTACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTa                                                                           >  1:1104450/1‑140 (MQ=255)

                                                              tACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTAc                                                                          >  1:187902/1‑140 (MQ=255)

                                                              tACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTAc                                                                          >  1:219570/1‑140 (MQ=255)

                                                                  gCAACAATCCATCAAATACTGAACTCCTCCGAAATCCCCCATCTTTTCTCACCCCTAAACCCGGGGTGGCGAACCTAACTGCTCCACTCAAAAATTTGAACCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTaa                                                                      <  2:164128/140‑1 (MQ=255)

                                                                  gCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTaa                                                                      <  1:710497/140‑1 (MQ=255)

                                                                  gCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTaa                                                                      <  2:636224/140‑1 (MQ=255)

                                                                  gCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTaa                                                                      <  2:654027/140‑1 (MQ=255)

                                                                  gCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTaa                                                                      <  2:204633/140‑1 (MQ=255)

                                                                     acaaTCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAAccc                                                                   >  1:803406/1‑140 (MQ=255)

                                                                        aTCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCtt                                                                >  1:592026/1‑140 (MQ=255)

                                                                        aTCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCtt                                                                >  1:536474/1‑140 (MQ=255)

                                                                         tCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTa                                                               >  2:1156596/1‑140 (MQ=255)

                                                                           cATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTAcc                                                             >  1:533864/1‑140 (MQ=255)

                                                                             tCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCAc                                                           <  2:536474/140‑1 (MQ=255)

                                                                             tCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCAc                                                           >  1:1111280/1‑140 (MQ=255)

                                                                                   aCTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTg                                                     >  2:1278556/1‑140 (MQ=255)

                                                                                   aCTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTg                                                     >  1:459684/1‑140 (MQ=255)

                                                                                   aCTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTg                                                     >  1:1053646/1‑140 (MQ=255)

                                                                                     tGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGt                                                   >  2:375901/1‑140 (MQ=255)

                                                                                            ctTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGa                                            >  1:483893/1‑140 (MQ=255)

                                                                                                 tAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTAt                                       >  2:1376726/1‑140 (MQ=255)

                                                                                                 tAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTAt                                       >  2:637935/1‑140 (MQ=255)

                                                                                                      cACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGccc                                  >  2:85745/1‑140 (MQ=255)

                                                                                                      cACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGccc                                  >  1:1401999/1‑140 (MQ=255)

                                                                                                       cccACCTTATCCCTCCCCTAAACGCCGGGTGGCGAACCTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGATGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCg                                 <  2:415667/139‑1 (MQ=255)

                                                                                                         cATCTTATCTCTCCCCTTAACGCCGGGTGGTGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGcc                                   <  1:109522/136‑1 (MQ=255)

                                                                                                         cATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGc                               >  2:231966/1‑140 (MQ=255)

                                                                                                         cATCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGc                               >  1:370556/1‑140 (MQ=255)

                                                                                                          aTCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCg                              <  2:1207056/140‑1 (MQ=255)

                                                                                                          aTCTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCg                              <  1:1376726/140‑1 (MQ=255)

                                                                                                            cTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGtt                            <  2:284274/140‑1 (MQ=255)

                                                                                                            cTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGtt                            <  2:1258030/140‑1 (MQ=255)

                                                                                                            cTTATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGtt                            <  2:533864/140‑1 (MQ=255)

                                                                                                              tATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCt                          <  2:592026/140‑1 (MQ=255)

                                                                                                              tATCTCTCCCCTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCt                          >  1:476682/1‑140 (MQ=255)

                                                                                                                     ccccTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTggg                     >  2:826123/1‑138 (MQ=255)

                                                                                                                     ccccTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGc                   >  1:102798/1‑140 (MQ=255)

                                                                                                                     ccccTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGc                   >  2:668220/1‑140 (MQ=255)

                                                                                                                     ccccTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGc                   >  1:377460/1‑140 (MQ=255)

                                                                                                                     ccccTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGc                   >  1:430281/1‑140 (MQ=255)

                                                                                                                     ccccTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGc                   >  1:1355025/1‑140 (MQ=255)

                                                                                                                     ccccTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGc                   >  2:1045142/1‑140 (MQ=255)

                                                                                                                     ccccTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGc                   >  1:166307/1‑140 (MQ=255)

                                                                                                                      cccTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTgggg                    >  1:413806/1‑138 (MQ=255)

                                                                                                                      cccTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTgggg                    <  2:413806/138‑1 (MQ=255)

                                                                                                                      cccTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGCg                  >  2:406355/1‑140 (MQ=255)

                                                                                                                        cTTAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGCggg                <  2:370556/140‑1 (MQ=255)

                                                                                                                         ttAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGCgggg               >  2:390741/1‑140 (MQ=255)

                                                                                                                          tAACGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGc                   >  1:969049/1‑135 (MQ=255)

                                                                                                                           aaCGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGCggg                <  1:1116827/137‑1 (MQ=255)

                                                                                                                           aaCGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGCggg                >  2:1116827/1‑137 (MQ=255)

                                                                                                                            aCGCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGCGgggtgg            >  1:816808/1‑140 (MQ=255)

                                                                                                                              gCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGCGgggtgggt          >  1:509333/1‑140 (MQ=255)

                                                                                                                              gCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGCGgggtgggt          >  2:1089146/1‑140 (MQ=255)

                                                                                                                              gCCGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGCGgggtgggg          >  2:807027/1‑139 (MQ=255)

                                                                                                                               ccGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGCGGggtgggtg         <  2:942988/140‑1 (MQ=255)

                                                                                                                               ccGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGCGGggtgggtg         <  2:100095/140‑1 (MQ=255)

                                                                                                                                cGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGCGgggt              <  1:291849/134‑1 (MQ=255)

                                                                                                                                cGGGTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGCGGGgtgggtgg        >  2:1053709/1‑140 (MQ=255)

                                                                                                                                  ggTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGCGGGGTGGGTGGTa      >  1:278588/1‑140 (MQ=255)

                                                                                                                                  ggTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGCGGGGTGGGTGGTa      >  2:151861/1‑140 (MQ=255)

                                                                                                                                   gTGGCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGCGGGGTGGGTGGTAt     >  1:1311567/1‑140 (MQ=255)

                                                                                                                                     ggCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGCGGGGTGGGTGGTATGc   <  2:965703/140‑1 (MQ=255)

                                                                                                                                      gCGAAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGCGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGCGGGGTGGGTGGTATGCt  <  2:1237215/140‑1 (MQ=255)

TTCTGCCTGCCAGAGATCCCAGTCGTTGCTGCGTAAAGCCTGCACAGCCTGGTTGTAAGTGATACCGCAACAATCCATCAAATACTGAACTACTTCGTAATGCACCATCTTATCTCTCCCCTTAACGCCGGGTGGCGGAACTAACTGCTGCACTGCAAAATTTGAATCCCGCCGTCATGTTCATACGCCTCGGGCTGGCTACTTAACCCCTTACCACTGCCTGGTAACTCGAAGTATTGCCCGGCGTTCTGTGGGGCGGGGTGGGTGGTATGCT  >  NC_000913/1419349‑1419622

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A