Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	159	82.1	2830106	99.3%	2810295	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,717,126	G→A	P33S (CCG→TCG)	tyrS ←	tyrosine‑‑tRNA ligase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,717,126	0	G	A	100.0%	239.9 / NA	68	P33S (CCG→TCG)	tyrS	tyrosine‑‑tRNA ligase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (32/36); total (32/36)

GTCGCGCCGCCTACCAGCGCAACCGGCTTGTGGCCCGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGGGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCATGTATATAACGACTGCACCTTTGCCGGTA  >  NC_000913/1716996‑1717262

gTCGCGCCGCCTACCAGCGCAACCGGCTTGTGGCCCGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTgcgc                                                                                                                                 <  1:841388/140‑1 (MQ=255)

 tCGCGCCGCCTACCAGCGCAACCGGCTTGTGGCCCGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGcc                                                                                                                                >  2:802475/1‑140 (MQ=255)

 tCGCGCCGCCTACCAGCGCAACCGGCTTGTGGCCCGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGcc                                                                                                                                >  1:383069/1‑140 (MQ=255)

 tCGCGCCGCCTACCAGCGCAACCGGCTTGTGGCCCGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGcc                                                                                                                                >  1:1274073/1‑140 (MQ=255)

 tCGCGCCGCCTACCAGCGCAACCGGCTTGTGGCCCGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGcc                                                                                                                                >  1:1351618/1‑140 (MQ=255)

 tCGCGCCGCCTACCAGCGCAACCGGCTTGTGGCCCGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGcc                                                                                                                                >  2:1133520/1‑140 (MQ=255)

  cgcgCCGCCTACCAGCGCAACCGGCTTGTGGCCCGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCa                                                                                                                               <  1:661666/140‑1 (MQ=255)

       cgccTACCAGCGCAACCGGCTTGTGGCCCGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGc                                                                                                                          <  1:802475/140‑1 (MQ=255)

        gccTACCAGCGCAACCGGCTTGTGGCCCGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGct                                                                                                                         <  1:103379/140‑1 (MQ=255)

                   cAACCGGCTTGTGGCCCGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCt                                                                                                              >  1:1385024/1‑140 (MQ=255)

                             gtgGCCCGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTcgtccg                                                                                                    <  1:1057740/140‑1 (MQ=255)

                              tgGCCCGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTcgtccgt                                                                                                   >  1:226304/1‑140 (MQ=255)

                                gCCCGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCa                                                                                                 >  1:1325227/1‑140 (MQ=255)

                                gCCCGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCa                                                                                                 >  2:433447/1‑140 (MQ=255)

                                gCCCGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCa                                                                                                 <  2:563782/140‑1 (MQ=255)

                                  ccGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCAcc                                                                                               <  2:1351618/140‑1 (MQ=255)

                                  ccGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCAcc                                                                                               <  2:1274073/140‑1 (MQ=255)

                                  ccGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCAcc                                                                                               <  2:1385024/140‑1 (MQ=255)

                                  ccGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCAcc                                                                                               <  2:383069/140‑1 (MQ=255)

                                  ccGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCAcc                                                                                               <  2:671291/140‑1 (MQ=255)

                                  ccGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCAcc                                                                                               <  1:433447/140‑1 (MQ=255)

                                   cGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCt                                                                                              >  2:184334/1‑140 (MQ=255)

                                         ctgGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCAcc                                                                                               <  1:282430/133‑1 (MQ=255)

                                         ctgGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCAcc                                                                                               >  2:282430/1‑133 (MQ=255)

                                                 gTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGcccc                                                                                <  2:1325227/140‑1 (MQ=255)

                                                   ttCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCg                                                                              <  1:637482/140‑1 (MQ=255)

                                                    tCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGc                                                                             >  2:1357214/1‑140 (MQ=255)

                                                      aGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGctc                                                                           <  2:370558/140‑1 (MQ=255)

                                                           tAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCa                                                                      <  2:226304/140‑1 (MQ=255)

                                                                  ggAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGttt                                                               >  1:294863/1‑140 (MQ=255)

                                                                         gATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAg                                                        >  1:807211/1‑140 (MQ=255)

                                                                           tGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGtt                                                      >  1:477860/1‑140 (MQ=255)

                                                                           tGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGtt                                                      >  2:365537/1‑140 (MQ=255)

                                                                                   aTGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTg                                              >  2:814961/1‑140 (MQ=255)

                                                                                   aTGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTg                                              <  2:135535/140‑1 (MQ=255)

                                                                                        aGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATc                                         >  1:16708/1‑140 (MQ=255)

                                                                                            gTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCaaaa                                     <  2:924547/140‑1 (MQ=255)

                                                                                              cAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAAtc                                   <  1:397139/140‑1 (MQ=255)

                                                                                                gCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAAtctc                                 <  1:814961/140‑1 (MQ=255)

                                                                                                gCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAAtctc                                 <  1:741421/140‑1 (MQ=255)

                                                                                                 cGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTcc                                <  1:618538/140‑1 (MQ=255)

                                                                                                 cGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTcc                                <  2:901653/140‑1 (MQ=255)

                                                                                                 cGGTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTcc                                <  2:1075546/140‑1 (MQ=255)

                                                                                                  ggTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCa                               <  1:1357214/140‑1 (MQ=255)

                                                                                                  ggTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCa                               <  2:16708/140‑1 (MQ=255)

                                                                                                   gTAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCAt                              <  1:952443/140‑1 (MQ=255)

                                                                                                    tAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCa                               >  2:1179820/1‑138 (MQ=255)

                                                                                                    tAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCa                               <  1:1179820/138‑1 (MQ=255)

                                                                                                    tAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCATg                             <  2:807211/140‑1 (MQ=255)

                                                                                                    tAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCATg                             >  1:723896/1‑140 (MQ=255)

                                                                                                    tAGGATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCATg                             <  1:1133520/140‑1 (MQ=255)

                                                                                                       gATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCATg                             <  1:66220/137‑1 (MQ=255)

                                                                                                       gATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCATg                             >  2:66220/1‑137 (MQ=255)

                                                                                                       gATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCATGtat                          >  1:62084/1‑140 (MQ=255)

                                                                                                       gATCGAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCATGtat                          <  2:731114/140‑1 (MQ=255)

                                                                                                           gAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCa                               <  2:1265222/131‑1 (MQ=255)

                                                                                                           gAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCa                               >  1:1265222/1‑131 (MQ=255)

                                                                                                           gAAGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCATGTATATaa                      >  2:1020127/1‑140 (MQ=255)

                                                                                                             aGCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCATGTATATAACg                    >  2:62421/1‑140 (MQ=255)

                                                                                                              gCCGCAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCATGTATATAACGa                   >  1:1373096/1‑140 (MQ=255)

                                                                                                                  cAATAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCATGTATATAACGACTGc               >  2:1007055/1‑140 (MQ=255)

                                                                                                                   aaTAGAGCGCGATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCATGTATATAACGACTGCa              <  2:462509/140‑1 (MQ=255)

                                                                                                                          cgcgATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCATGTATATAACGACTGCACCTTTGc       <  1:184334/140‑1 (MQ=255)

                                                                                                                          cgcgATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCATGTATATAACGACTGCACCTTTGc       >  2:840424/1‑140 (MQ=255)

                                                                                                                          cgcgATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCATGTATATAACGACTGCACCTTTGc       >  2:94450/1‑140 (MQ=255)

                                                                                                                            cgATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCATGTATATAACGACTGCACCTTTGCCg     >  2:929020/1‑140 (MQ=255)

                                                                                                                             gATCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCATGTATATAACGACTGCACCTTTGCCgg    >  1:1127809/1‑140 (MQ=255)

                                                                                                                               tCGAGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCAATGTATATAACGACTGCACCTTTGCCGGTa  >  2:865906/1‑140 (MQ=255)

GTCGCGCCGCCTACCAGCGCAACCGGCTTGTGGCCCGCCTGCTGGAAGCGTTTCAGGCATAACAATGGAACAAGATGCCCCAAATGCAAGCTGTCAGCGGTAGGATCGAAGCCGCAATAGAGCGCGATCGGGCCTTGCGCCAGTCGCTCTGCTAACGCTTCCTCGTCCGTCACCTGGGCTACCAGCCCCCGCTCTTGCAATTGTTTAATCAAGTTACTGCTTGCCATCAAAATCTCCATGTATATAACGACTGCACCTTTGCCGGTA  >  NC_000913/1716996‑1717262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A