Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 159 82.1 2830106 99.3% 2810295 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,796,199 T→C A582A (GCA→GCG)  pheT ← phenylalanine‑‑tRNA ligase subunit beta

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,796,1990TC100.0% 247.7 / NA 66A582A (GCA→GCG) pheTphenylalanine‑‑tRNA ligase subunit beta
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (38/28);  total (38/28)

CAGGTCGAGAACGGATTCAAGATCGCCTTTCAAATCATAGAAATCAACGGTCTCTTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAAC  >  NC_000913/1796064‑1796330
                                                                                                                                       |                                                                                                                                   
cAGGTCGAGAACGGATTCAAGATCGCCTTTCAAATCATAGAAATCAACGGTCTCTTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCt                                                                                                                                 <  1:1187968/140‑1 (MQ=255)
  ggTCGAGAACGGATTCAAGATCGCCTTTCAAATCATAGAAATCAACGGTCTCTTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGa                                                                                                                               <  2:536743/140‑1 (MQ=255)
   gTCGAGAACGGATTCAAGATCGCCTTTCAAATCATAGAAATCAACGGTCTCTTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAg                                                                                                                              >  1:681850/1‑140 (MQ=255)
    tCGAGAACGGATTCAAGATCGCCTTTCAAATCATAGAAATCAACGGTCTCTTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGt                                                                                                                             <  2:653650/140‑1 (MQ=255)
        gaACGGATTCAAGATCGCCTTTCAAATCATAGAAATCAACGGTCTCTTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCt                                                                                                                         >  1:1014148/1‑140 (MQ=255)
        gaACGGATTCAAGATCGCCTTTCAAATCATAGAAATCAACGGTCTCTTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCt                                                                                                                         >  2:940223/1‑140 (MQ=255)
             gATTCAAGATCGCCTTTCAAATCATAGAAATCAACGGTCTCTTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTAc                                                                                                                    >  2:608581/1‑140 (MQ=255)
             gATTCAAGATCGCCTTTCAAATCATAGAAATCAACGGTCTCTTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTAc                                                                                                                    >  1:1009379/1‑140 (MQ=255)
              aTTCAAGATCGCCTTTCAAATCATAGAAATCAACGGTCTCTTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACg                                                                                                                   >  2:132597/1‑140 (MQ=255)
                       cGCCTTTCAAATCATAGAAATCAACGGTCTCTTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGa                                                                                                          <  2:733120/140‑1 (MQ=255)
                       cGCCTTTCAAATCATAGAAATCAACGGTCTCTTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGa                                                                                                          <  1:608581/140‑1 (MQ=255)
                              cAAATCATAGAAATCAACGGTCTCTTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCttt                                                                                                   <  1:940223/140‑1 (MQ=255)
                                            cAACGGTCTCTTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGcaca                                                                                     <  2:444480/140‑1 (MQ=255)
                                             aaCGGTCTCTTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCacac                                                                                    >  2:1190991/1‑140 (MQ=255)
                                              aCGGTCTCTTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACg                                                                                   <  2:1009379/140‑1 (MQ=255)
                                                  tctcTTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTc                                                                               >  1:1229131/1‑140 (MQ=255)
                                                  tctcTTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTc                                                                               >  2:446902/1‑140 (MQ=255)
                                                    tctTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTctg                                                                             >  1:714562/1‑140 (MQ=255)
                                                    tctTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTctg                                                                             >  1:793659/1‑140 (MQ=255)
                                                    tctTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTctg                                                                             >  2:1264822/1‑140 (MQ=255)
                                                              ggTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTc                                                                   <  1:1389591/140‑1 (MQ=255)
                                                              ggTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTc                                                                   <  2:8536/140‑1 (MQ=255)
                                                               gTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCt                                                                  >  2:37207/1‑140 (MQ=255)
                                                                ttCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTc                                                                   >  1:992494/1‑138 (MQ=255)
                                                                ttCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTc                                                                   <  2:992494/138‑1 (MQ=255)
                                                                ttCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTg                                                                 >  2:347927/1‑140 (MQ=255)
                                                                ttCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTg                                                                 >  2:24370/1‑140 (MQ=255)
                                                                        ctctTCGTAACGGTTACCGCAAATCACACAGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTc                                                                   <  1:1256091/130‑1 (MQ=255)
                                                                        ctctTCGTAACGGTTACCGCAAATCACACAGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTc                                                                   >  2:1256091/1‑130 (MQ=255)
                                                                           ttCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTAcacca                                                      <  1:1078527/140‑1 (MQ=255)
                                                                           ttCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTAcacca                                                      >  1:1399764/1‑140 (MQ=255)
                                                                           ttCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTAcacca                                                      >  1:286418/1‑140 (MQ=255)
                                                                             cGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTAcaccatg                                                    >  2:883069/1‑138 (MQ=255)
                                                                                aaCGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGtt                                                 <  2:1014148/140‑1 (MQ=255)
                                                                                    gTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCca                                             >  1:1316267/1‑140 (MQ=255)
                                                                                       aCCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCcagca                                          >  2:1042129/1‑140 (MQ=255)
                                                                                       aCCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCcagca                                          >  2:888874/1‑140 (MQ=255)
                                                                                       aCCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCcagca                                          <  1:1190991/140‑1 (MQ=255)
                                                                                       aCCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCcagca                                          >  1:1241896/1‑140 (MQ=255)
                                                                                       aCCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCT‑GTTGTACACCACGGTTGCcagcag                                         >  1:1041706/1‑140 (MQ=255)
                                                                                          gCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGc                                       <  1:888874/140‑1 (MQ=255)
                                                                                           cAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGcc                                      <  2:793659/140‑1 (MQ=255)
                                                                                             aaTCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAg                                    >  2:268831/1‑140 (MQ=255)
                                                                                              aTCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGt                                   <  2:952001/140‑1 (MQ=255)
                                                                                               tCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCATGGTTGCCAGCAGGCCAGTc                                  <  1:883069/140‑1 (MQ=255)
                                                                                               tCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTc                                  >  2:957343/1‑140 (MQ=255)
                                                                                                 acacCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCca                                <  2:286418/140‑1 (MQ=255)
                                                                                                  cacCGGCTAACATCAGATCCTGACGAATGCCCAACGGCGCTTGAGTATCTGGTACGAAACACAGACCGCTTTCGAAAATGCGCACACATATCTGCTGCCGCTTCTGGTTGTACACCACGCTTGCCAGCAGGCCATTCcac                               >  2:216257/1‑140 (MQ=255)
                                                                                                        cTAACATCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGaa                         >  2:863169/1‑140 (MQ=255)
                                                                                                             aTCAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACg                    <  1:1042129/140‑1 (MQ=255)
                                                                                                               cAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCa                  <  2:1176084/140‑1 (MQ=255)
                                                                                                               cAGATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCa                  >  1:534074/1‑140 (MQ=255)
                                                                                                                 gATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCAtt                >  2:588610/1‑140 (MQ=255)
                                                                                                                 gATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCAtt                >  2:1188891/1‑140 (MQ=255)
                                                                                                                 gATCCTGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCAtt                >  2:260146/1‑140 (MQ=255)
                                                                                                                      tggcGAATGCTCAACGTCGCCTGAGTATCTGGTACCAAGCGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGTTGACGGTTCTGGTTGTACACCACGTTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGa           <  2:1399764/137‑1 (MQ=255)
                                                                                                                      tGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGa           <  1:588610/140‑1 (MQ=255)
                                                                                                                      tGACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGa           <  2:117981/140‑1 (MQ=255)
                                                                                                                       gACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACg                    >  1:509587/1‑130 (MQ=255)
                                                                                                                       gACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACg                    <  2:509587/130‑1 (MQ=255)
                                                                                                                       gACGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGAc          >  2:549720/1‑140 (MQ=255)
                                                                                                                         cGAATGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACAt        <  2:534074/140‑1 (MQ=255)
                                                                                                                            aTGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTc     >  1:146336/1‑140 (MQ=255)
                                                                                                                            aTGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTc     >  1:10259/1‑140 (MQ=255)
                                                                                                                             tGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTc     <  1:149586/139‑1 (MQ=255)
                                                                                                                             tGCCCAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTc     >  2:149586/1‑139 (MQ=255)
                                                                                                                               cccAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAAc  <  1:37207/140‑1 (MQ=255)
                                                                                                                               cccAACGGCGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAAc  >  1:592811/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                   
CAGGTCGAGAACGGATTCAAGATCGCCTTTCAAATCATAGAAATCAACGGTCTCTTTTGCCAGGTTCCAGTGCTCTTCGTAACGGTTACCGCAAATCACACCGGCTAACATCAGATCCTGACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAAC  >  NC_000913/1796064‑1796330

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A