Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	260	73.5	2514320	99.3%	2496719	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,796,854	A→G	V364A (GTT→GCT)	pheT ←	phenylalanine‑‑tRNA ligase subunit beta

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,796,854	0	A	G	100.0%	279.1 / NA	78	V364A (GTT→GCT)	pheT	phenylalanine‑‑tRNA ligase subunit beta
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (36/42); total (36/42)

GACGTAGAGTGATGGTTGCACGCTTCGGCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAACGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCCAGCAGCACGTTTTGTGTTTCGTCATTCACGCCAGAGTGTTCG  >  NC_000913/1796717‑1796988

gacgTAGAGTGATGGTTGCACGCTTCGGCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCg                                                                                                                                      >  1:40663/1‑140 (MQ=255)

  cgTAGAGTGATGGTTGCACGCTTCGGCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGcc                                                                                                                                    <  1:1035378/140‑1 (MQ=255)

           aTGGTTGCACGCTTCGGCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATa                                                                                                                           >  1:100468/1‑140 (MQ=255)

           aTGGTTGCACGCTTCGGCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATa                                                                                                                           >  2:1075437/1‑140 (MQ=255)

           aTGGTTGCACGCTTCGGCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATa                                                                                                                           >  1:694719/1‑140 (MQ=255)

           aTGGTTGCACGCTTCGGCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATa                                                                                                                           >  2:809277/1‑140 (MQ=255)

              gTTGCACGCTTCGGCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACg                                                                                                                        >  2:622991/1‑140 (MQ=255)

              gTTGCACGCTTCGGCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACg                                                                                                                        >  2:646098/1‑140 (MQ=255)

                 gCACGCTTCGGCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCAc                                                                                                                                  >  1:1025350/1‑127 (MQ=255)

                 gCACGCTTCGGCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCAc                                                                                                                                  <  2:1025350/127‑1 (MQ=255)

                 gCACGCTTCGGCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTg                                                                                                                     >  2:64722/1‑140 (MQ=255)

                   aCGCTTCGGCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTgag                                                                                                                   >  2:776406/1‑140 (MQ=255)

                      ctgcGGCAGCGTTGCTTCGTTGGTGATATCAATTCCCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACg                                                                                                                <  2:1076119/137‑1 (MQ=255)

                      cTTCGGCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACg                                                                                                                <  2:527608/140‑1 (MQ=255)

                      cTTCGGCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACg                                                                                                                <  1:353905/140‑1 (MQ=255)

                         cGGCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCAt                                                                                                             <  2:1021026/140‑1 (MQ=255)

                         cGGCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCAt                                                                                                             >  2:829870/1‑140 (MQ=255)

                          ggCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATc                                                                                                            >  1:223405/1‑140 (MQ=255)

                           gCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCg                                                                                                           <  2:40663/140‑1 (MQ=255)

                           gCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTACAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCg                                                                                                           <  1:324527/140‑1 (MQ=255)

                            cAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCgg                                                                                                          <  2:967030/140‑1 (MQ=255)

                                 ttGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACg                                                                                                                >  2:1229638/1‑129 (MQ=255)

                                 ttGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACg                                                                                                                <  1:1229638/129‑1 (MQ=255)

                                  tGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCa                                                                                                    <  1:892477/140‑1 (MQ=255)

                                         ttGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATg                                                                                             >  1:364066/1‑140 (MQ=255)

                                            gTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGTAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATgacg                                                                                          >  1:1178337/1‑140 (MQ=255)

                                                 atCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAg                                                                                     <  1:586003/140‑1 (MQ=255)

                                                 atCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACCTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAg                                                                                     >  2:1021689/1‑140 (MQ=255)

                                                  tCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGc                                                                                    >  1:1126311/1‑140 (MQ=255)

                                                   cAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCa                                                                                   <  1:547364/140‑1 (MQ=255)

                                                   cAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCa                                                                                   <  2:1090627/140‑1 (MQ=255)

                                                   cAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCa                                                                                   <  1:646098/140‑1 (MQ=255)

                                                     aTTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACg                                                                                 <  1:430312/140‑1 (MQ=255)

                                                       tACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGAc                                                                               <  1:271521/140‑1 (MQ=255)

                                                       tACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGAc                                                                               <  2:784755/140‑1 (MQ=255)

                                                         ccGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCg                                                                             <  1:776406/140‑1 (MQ=255)

                                                          cGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCgg                                                                            <  2:100468/140‑1 (MQ=255)

                                                            ggCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGAc                                                                               <  2:2475/135‑1 (MQ=255)

                                                            ggCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGAc                                                                               >  1:2475/1‑135 (MQ=255)

                                                            ggCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTg                                                                          >  1:202084/1‑140 (MQ=255)

                                                                  ccTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGAc                                                                    >  2:339496/1‑140 (MQ=255)

                                                                  ccTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGAc                                                                    >  1:550526/1‑140 (MQ=255)

                                                                   cTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGTAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACa                                                                   <  2:1178337/140‑1 (MQ=255)

                                                                    tCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAg                                                                  <  2:1123162/140‑1 (MQ=255)

                                                                    tCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAg                                                                  <  2:810173/140‑1 (MQ=255)

                                                                        caccGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCggg                                                              <  2:550526/140‑1 (MQ=255)

                                                                           cGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTa                                                           >  1:612842/1‑140 (MQ=255)

                                                                           cGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTa                                                           >  2:146696/1‑140 (MQ=255)

                                                                            gCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTaa                                                          >  1:110435/1‑140 (MQ=255)

                                                                             cAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTaaa                                                         >  2:918599/1‑140 (MQ=255)

                                                                             cAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTaaa                                                         >  2:301329/1‑140 (MQ=255)

                                                                               gATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGa                                                       <  1:1075437/140‑1 (MQ=255)

                                                                                  gTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAAcg                                                    <  2:612842/140‑1 (MQ=255)

                                                                                  gTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTACAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAAcg                                                    <  1:403916/140‑1 (MQ=255)

                                                                                    cGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAAcgcg                                                  <  2:136862/140‑1 (MQ=255)

                                                                                    cGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAAcgcg                                                  <  2:223405/140‑1 (MQ=255)

                                                                                        cagcagACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAAcgcg                                                  >  1:1252060/1‑136 (MQ=255)

                                                                                        cagcagACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAAcgcg                                                  <  2:1252060/136‑1 (MQ=255)

                                                                                          gcagACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTcc                                            >  2:928932/1‑140 (MQ=255)

                                                                                              aCGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCcagca                                        >  1:1234949/1‑140 (MQ=255)

                                                                                                gggTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCCagcagc                                      >  1:539630/1‑140 (MQ=255)

                                                                                                  gTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCATGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCCagcagc                                      <  1:1023271/138‑1 (MQ=255)

                                                                                                  gTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCATGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCCagcagc                                      >  2:1023271/1‑138 (MQ=255)

                                                                                                    cGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCCAGCAGCACGt                                  <  1:622991/140‑1 (MQ=255)

                                                                                                     gCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCCAGCAGCACGtt                                 >  1:513387/1‑140 (MQ=255)

                                                                                                            ccATCGCTTTGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCCAGCAGCACGTTTTGTGtt                          >  1:1040555/1‑140 (MQ=255)

                                                                                                                    ttGTGCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCCAGCAGCACGTTTTGTGTTTCGTCAtt                  <  2:202084/140‑1 (MQ=255)

                                                                                                                     tgtgCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCCAGCAGCACGTTTTGTGTTTCg                       >  1:929256/1‑134 (MQ=255)

                                                                                                                     tgtgCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCCAGCAGCACGTTTTGTGTTTCg                       <  2:929256/134‑1 (MQ=255)

                                                                                                                      gtgCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCCAGCAGCACGTTTTGTGTTTCGTCATTCa                <  1:918599/140‑1 (MQ=255)

                                                                                                                      gtgCTGCAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCCAGCAGCACGTTTTGTGTTTCGTCATTCa                <  1:809277/140‑1 (MQ=255)

                                                                                                                        gctgcAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCCAGCAGCACGTTTTGTGTTTCGTCATTCACg              <  1:1093069/140‑1 (MQ=255)

                                                                                                                        gctgcAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCCAGCAGCACGTTTTGTGTTTCGTCATTCACg              <  1:1091729/140‑1 (MQ=255)

                                                                                                                           gcAGTGCCGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCCAGCAGCACGTTTTGTGTTTCGTCATTCACGCCa           <  2:694719/140‑1 (MQ=255)

                                                                                                                                 ccGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCCAGCAGCACGTTTTGTGTTTCGTCATTCACGCCAGAgtgt     >  1:714327/1‑140 (MQ=255)

                                                                                                                                 ccGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCCAGCAGCACGTTTTGTGTTTCGTCATTCACGCCAGAgtgt     >  1:207015/1‑140 (MQ=255)

                                                                                                                                  cGGATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCCAGCAGCACGTTTTGTGTTTCGTCATTCACGCCAGAGTGtt    <  2:539630/140‑1 (MQ=255)

                                                                                                                                    gATCAGCGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCCAGCAGCACGTTTTGTGTTTCGTCATTCACGCCAGAGTGTTCg  <  1:1047851/140‑1 (MQ=255)

GACGTAGAGTGATGGTTGCACGCTTCGGCAGCGTTGCTTCGTTGGTGATATCAATTACCGGGCCAGCCTCACCACCGCAGATGTCGATCAGCAGACGGGTCGCACGTTCCATCGCTTTGTGCTGCAGTGCCGGATCAACGCCACGCTCATAACGGTGAGACGCATCGGTATGCAGGCCATGACGACGAGCACGACCGGTGATAGACAGCGGGCTAAAGAACGCGCATTCCAGCAGCACGTTTTGTGTTTCGTCATTCACGCCAGAGTGTTCG  >  NC_000913/1796717‑1796988

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A