Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 159 82.1 2830106 99.3% 2810295 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,943,321 T→C R220R (CGT→CGC)  znuC → Zn(2(+)) ABC transporter ATP binding subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,943,3210TC100.0% 360.3 / NA 95R220R (CGT→CGC) znuCZn(2(+)) ABC transporter ATP binding subunit
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (40/55);  total (40/55)

TGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCTCATGATTGAATTATTATTTCCCGGTTGGTTAGCCGGGATCATG  >  NC_000913/1943188‑1943455
                                                                                                                                     |                                                                                                                                      
tGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCt                                                                                                                                  <  1:450084/140‑1 (MQ=255)
 ggTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTg                                                                                                                                 <  2:904656/140‑1 (MQ=255)
 ggTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTg                                                                                                                                 <  1:1204893/140‑1 (MQ=255)
  gTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGa                                                                                                                                <  1:725861/140‑1 (MQ=255)
   tttCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGaa                                                                                                                               <  2:84582/140‑1 (MQ=255)
   tttCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGaa                                                                                                                               <  2:583483/140‑1 (MQ=255)
    ttCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGaac                                                                                                                              >  1:126994/1‑140 (MQ=255)
     tctcACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGaaca                                                                                                                             >  2:967785/1‑140 (MQ=255)
      ctcACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGaacaa                                                                                                                            >  2:625458/1‑140 (MQ=255)
      ctcACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGaacaa                                                                                                                            <  2:755622/140‑1 (MQ=255)
             tCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGta                                                                                                                     >  2:1253739/1‑140 (MQ=255)
              cTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGtat                                                                                                                    <  2:691788/140‑1 (MQ=255)
               tGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTGCTCGCGGTGCTGAACAACTGGGtatc                                                                                                                   >  1:990490/1‑140 (MQ=255)
                 cATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGaac                                                                                                                              <  2:1089834/127‑1 (MQ=255)
                 cATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGaac                                                                                                                              >  1:1089834/1‑127 (MQ=255)
                 cATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGtatcta                                                                                                                 >  1:840057/1‑140 (MQ=255)
                 cATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGtatcta                                                                                                                 >  1:593746/1‑140 (MQ=255)
                 cATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGtatcta                                                                                                                 >  2:838775/1‑140 (MQ=255)
                  aTCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGtatctat                                                                                                                <  2:292616/140‑1 (MQ=255)
                      ggTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGTTATCTATCGcc                                                                                                            <  2:1093151/140‑1 (MQ=255)
                      ggTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGcc                                                                                                            >  1:649918/1‑140 (MQ=255)
                      ggTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGcc                                                                                                            <  1:566709/140‑1 (MQ=255)
                      ggTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGcc                                                                                                            <  1:1142072/140‑1 (MQ=255)
                      ggTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGcc                                                                                                            >  1:517043/1‑140 (MQ=255)
                      ggTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGcc                                                                                                            <  2:490085/140‑1 (MQ=255)
                       gTGATGGCAAAAAGCTATGAAGTGCTGTGCCTGAATCACTACATTTGGTGTTATGGCATTCCGGAAGGTGTTTGCCTGCAGCCGCAGTTTATTCCAACGTGCGGTCCGTGCGGTGCTGAACAACTGGGTATCTATCGCca                                                                                                           <  2:211030/140‑1 (MQ=255)
                       gTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACTACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGAGTATCTATCGCca                                                                                                           >  1:211030/1‑140 (MQ=255)
                       gTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCTGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCca                                                                                                           <  1:607661/140‑1 (MQ=255)
                       gTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGtatcta                                                                                                                 <  1:75264/134‑1 (MQ=255)
                       gTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGtatcta                                                                                                                 >  2:75264/1‑134 (MQ=255)
                       gTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGcc                                                                                                            <  2:825475/139‑1 (MQ=255)
                       gTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGcc                                                                                                            >  1:825475/1‑139 (MQ=255)
                       gTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCca                                                                                                           <  1:967785/140‑1 (MQ=255)
                       gTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCca                                                                                                           <  2:840057/140‑1 (MQ=255)
                       gTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCca                                                                                                           >  2:1383037/1‑140 (MQ=255)
                       gTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCca                                                                                                           <  1:861430/140‑1 (MQ=255)
                       gTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCca                                                                                                           <  2:23661/140‑1 (MQ=255)
                       gTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCca                                                                                                           >  2:1021152/1‑140 (MQ=255)
                       gTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCca                                                                                                           <  1:1138565/140‑1 (MQ=255)
                       gTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCca                                                                                                           >  2:704655/1‑140 (MQ=255)
                       gTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCca                                                                                                           <  2:820663/140‑1 (MQ=255)
                       gTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCca                                                                                                           <  2:1067179/140‑1 (MQ=255)
                       gTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTA‑TTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCca                                                                                                           <  2:278502/139‑1 (MQ=255)
                       gTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTA‑TTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCca                                                                                                           >  1:278502/1‑139 (MQ=255)
                           tGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCcatcat                                                                                                       <  1:1258410/140‑1 (MQ=255)
                            ggCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCcatcatc                                                                                                      >  1:1202306/1‑140 (MQ=255)
                                 aaaCCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAAc                                                                                                 >  1:267658/1‑140 (MQ=255)
                                       aTGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGt                                                                                           <  1:1230355/140‑1 (MQ=255)
                                        tGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTc                                                                                          <  1:1383037/140‑1 (MQ=255)
                                         gAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCa                                                                                         <  1:5392/140‑1 (MQ=255)
                                           aGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACg                                                                                       <  1:915548/140‑1 (MQ=255)
                                              gCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGAtt                                                                                    <  1:704655/140‑1 (MQ=255)
                                                    ccTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGAtt                                                                                    >  1:883834/1‑134 (MQ=255)
                                                    ccTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGAtt                                                                                    <  2:883834/134‑1 (MQ=255)
                                                    ccTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAgg                                                                              >  1:1082569/1‑140 (MQ=255)
                                                     cTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAggg                                                                             <  1:22700/140‑1 (MQ=255)
                                                       gAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGAc                                                                           <  2:267658/140‑1 (MQ=255)
                                                         aTCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGa                                                                         >  1:1260992/1‑140 (MQ=255)
                                                            accacATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAAtt                                                                      >  1:1136911/1‑140 (MQ=255)
                                                            accacATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAAtt                                                                      >  2:11725/1‑140 (MQ=255)
                                                            accacATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAAtt                                                                      >  1:929553/1‑140 (MQ=255)
                                                              cacaTTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGt                                                                    >  1:260866/1‑140 (MQ=255)
                                                              cacaTTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGt                                                                    >  2:297793/1‑140 (MQ=255)
                                                              cacaTTTGTTGTTCCAGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGt                                                                    >  1:819140/1‑140 (MQ=255)
                                                               acaTTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATGACCATCGTCACGATTTACAGGGACGAATTGtt                                                                   <  1:791981/140‑1 (MQ=255)
                                                                  tttGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTg                                                                >  1:1033475/1‑140 (MQ=255)
                                                                  tttGTTGTTCCAGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTg                                                                <  2:819140/140‑1 (MQ=255)
                                                                    tgttgtTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCg                                                              <  2:593746/140‑1 (MQ=255)
                                                                     gttgttCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGt                                                             <  1:625458/140‑1 (MQ=255)
                                                                     gttgttCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGt                                                             <  1:109860/140‑1 (MQ=255)
                                                                     gttgttCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGt                                                             <  2:944995/140‑1 (MQ=255)
                                                                      ttgttCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTc                                                            <  2:163104/140‑1 (MQ=255)
                                                                        gttCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCgg                                                          >  2:412945/1‑140 (MQ=255)
                                                                         ttCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCggg                                                         <  2:1033475/140‑1 (MQ=255)
                                                                           ccGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGa                                                       >  1:485523/1‑140 (MQ=255)
                                                                              gCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAAt                                                    >  2:321210/1‑140 (MQ=255)
                                                                                    cGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGc                                              >  2:1111433/1‑140 (MQ=255)
                                                                                     ggAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCt                                             <  2:627577/140‑1 (MQ=255)
                                                                                      gAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCTc                                            >  1:1187060/1‑140 (MQ=255)
                                                                                      gAAGATGTTTCCCTGCATCCGGAGTTTATTTCAATGCTTGGGCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGACGTAATGATCGCTc                                            >  2:1343427/1‑140 (MQ=255)
                                                                                          ttgttTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCTCATGa                                        <  1:318202/140‑1 (MQ=255)
                                                                                           tgttTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCTCATGAt                                       <  2:649918/140‑1 (MQ=255)
                                                                                           tgttTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCTCATGAt                                       <  1:175495/140‑1 (MQ=255)
                                                                                           tgttTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCTCATGAt                                       <  2:1136911/140‑1 (MQ=255)
                                                                                                   tGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCTCATGATTGAattat                               <  2:1076145/140‑1 (MQ=255)
                                                                                                   tGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCTCATGATTGAattat                               >  1:233863/1‑140 (MQ=255)
                                                                                                           gAGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCTCATGATTGAATTATTATTTccc                       <  1:1111433/140‑1 (MQ=255)
                                                                                                            aGTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCTCATGATTGAATTATTATTTCCCg                      >  2:627248/1‑140 (MQ=255)
                                                                                                             gTTTATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCTCATGATTGAATTATTATTTCCCgg                     <  2:915351/140‑1 (MQ=255)
                                                                                                               ttATTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCTCATGATTGAATTATTATTTCCCggtt                   >  1:11036/1‑140 (MQ=255)
                                                                                                                 aTTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCTCATGATTGAATTATTATTTCCCggttgg                 <  1:11725/140‑1 (MQ=255)
                                                                                                                 aTTTCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCTCATGATTGAATTATTATTTCCCggttgg                 <  2:1082569/140‑1 (MQ=255)
                                                                                                                  tttCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCTCATGATTGAATTATTATTTCCCggttggt                <  2:929553/140‑1 (MQ=255)
                                                                                                                  tttCAATGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCTCATGATTGAATTATTATTTCCCggttggt                >  1:588555/1‑140 (MQ=255)
                                                                                                                        tGTTTGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCTCATGATTGAATTATTATTTCCCGGTTGGTTAGCCg          >  1:1108489/1‑140 (MQ=255)
                                                                                                                           ttGGTCCTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCTCATGATTGAATTATTATTTCCCGGTTGGTTAGCCGGGa       <  2:233863/140‑1 (MQ=255)
                                                                                                                                ccTCGCGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCTCATGATTGAATTATTATTTCCCGGTTGGTTAGCCGGGATCATg  <  1:1253739/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                      
TGGTTTCTCACGATCTGCATCTGGTGATGGCAAAAACCGATGAAGTGCTGTGCCTGAATCACCACATTTGTTGTTCCGGCACACCGGAAGTTGTTTCCCTGCATCCGGAGTTTATTTCAATGTTTGGTCCTCGTGGTGCTGAACAACTGGGTATCTATCGCCATCATCATAACCATCGTCACGATTTACAGGGACGAATTGTTTTGCGTCGGGGAAATGATCGCTCATGATTGAATTATTATTTCCCGGTTGGTTAGCCGGGATCATG  >  NC_000913/1943188‑1943455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A