Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 159 82.1 2830106 99.3% 2810295 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,078,942 T→C intergenic (+11/+90) yoeF → / ← yeeX CP4‑44 prophage; putative uncharacterized protein YoeF/DUF496 domain‑containing protein YeeX

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,078,9420TC100.0% 274.3 / NA 73intergenic (+11/+90)yoeF/yeeXCP4‑44 prophage; putative uncharacterized protein YoeF/DUF496 domain‑containing protein YeeX
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (43/30);  total (43/30)

ATATCTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGTTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCATTTCGCCCATAGCTTTCAGCTT  >  NC_000913/2078806‑2079076
                                                                                                                                        |                                                                                                                                      
atatCTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGctct                                                                                                                                     <  1:1158060/140‑1 (MQ=255)
    cTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGa                                                                                                                                 <  2:842788/140‑1 (MQ=255)
     tttGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGAt                                                                                                                                >  1:75575/1‑140 (MQ=255)
        ggTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATgag                                                                                                                             <  1:1027720/140‑1 (MQ=255)
          tGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGaa                                                                                                                           >  1:363957/1‑140 (MQ=255)
          tGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGaa                                                                                                                           >  2:643837/1‑140 (MQ=255)
              aaGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAatgat                                                                                                                       <  2:9298/140‑1 (MQ=255)
                gTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGCAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAAtgatga                                                                                                                     <  2:888601/140‑1 (MQ=255)
                gTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAAtgatga                                                                                                                     <  1:323617/140‑1 (MQ=255)
                gTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAAtgatga                                                                                                                     <  1:285398/140‑1 (MQ=255)
                gTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAAtgatga                                                                                                                     <  2:585550/140‑1 (MQ=255)
                gTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAAtgatga                                                                                                                     <  2:531844/140‑1 (MQ=255)
                  tGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACg                                                                                                                   <  1:1190701/140‑1 (MQ=255)
                     ttACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTg                                                                                                                <  1:391695/140‑1 (MQ=255)
                     ttACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTg                                                                                                                <  2:483962/140‑1 (MQ=255)
                          ggAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATaca                                                                                                           <  2:363957/140‑1 (MQ=255)
                          ggAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATaca                                                                                                           <  1:101649/140‑1 (MQ=255)
                               cTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGAt                                                                                                      <  2:630346/140‑1 (MQ=255)
                                   aGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGGTAAGa                                                                                                  >  1:543294/1‑140 (MQ=255)
                                    gcgcACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGaa                                                                                                 <  1:1004813/140‑1 (MQ=255)
                                       cacaACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATca                                                                                              >  2:898737/1‑140 (MQ=255)
                                       cacaACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTCTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAg                                                                                                        <  2:1242344/130‑1 (MQ=255)
                                       cacaACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTCTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAg                                                                                                        >  1:1242344/1‑130 (MQ=255)
                                                ttAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATcaatgagcaat                                                                                     >  1:555598/1‑140 (MQ=255)
                                                    tAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAgg                                                                                 >  1:343198/1‑140 (MQ=255)
                                                    tAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAgg                                                                                 >  2:132195/1‑140 (MQ=255)
                                                      aCCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATca                                                                                              <  1:29750/125‑1 (MQ=255)
                                                      aCCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATca                                                                                              >  2:29750/1‑125 (MQ=255)
                                                      aCCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATca                                                                                              >  1:246426/1‑125 (MQ=255)
                                                      aCCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATca                                                                                              <  2:246426/125‑1 (MQ=255)
                                                      aCCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGt                                                                               >  1:694485/1‑140 (MQ=255)
                                                      aCCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGt                                                                               >  1:428827/1‑140 (MQ=255)
                                                      aCCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGt                                                                               >  2:66044/1‑140 (MQ=255)
                                                      aCCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGt                                                                               <  2:543294/140‑1 (MQ=255)
                                                      aCCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGt                                                                               >  2:1227646/1‑140 (MQ=255)
                                                        cAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTg                                                                             >  2:429758/1‑140 (MQ=255)
                                                         aGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGGTGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGc                                                                            >  2:506320/1‑140 (MQ=255)
                                                          gTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGcc                                                                           >  1:456238/1‑140 (MQ=255)
                                                          gTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGcc                                                                           >  1:451489/1‑140 (MQ=255)
                                                          gTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGcc                                                                           >  2:894470/1‑140 (MQ=255)
                                                          gTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGcc                                                                           >  2:229667/1‑140 (MQ=255)
                                                           tGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTg                                                                             >  2:414925/1‑137 (MQ=255)
                                                           tGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTg                                                                             <  1:414925/137‑1 (MQ=255)
                                                           tGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCg                                                                          >  1:239876/1‑140 (MQ=255)
                                                           tGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCg                                                                          >  1:958236/1‑140 (MQ=255)
                                                              aGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGc                                                                       >  1:1125970/1‑140 (MQ=255)
                                                                     aaCAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTc                                                                >  1:1022592/1‑140 (MQ=255)
                                                                     aaCAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTc                                                                >  2:1196712/1‑140 (MQ=255)
                                                                          tGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGa                                                           >  2:960043/1‑140 (MQ=255)
                                                                          tGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGa                                                           >  2:1383500/1‑140 (MQ=255)
                                                                          tGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGa                                                           >  1:917172/1‑140 (MQ=255)
                                                                            gAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAAt                                                         <  2:889749/140‑1 (MQ=255)
                                                                            gAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAAt                                                         <  2:456238/140‑1 (MQ=255)
                                                                            gAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAAt                                                         <  2:694485/140‑1 (MQ=255)
                                                                              gTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATaa                                                       >  2:1337225/1‑140 (MQ=255)
                                                                                  cAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACg                                                   >  1:483152/1‑140 (MQ=255)
                                                                                    gAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACggg                                                 <  2:958236/140‑1 (MQ=255)
                                                                                    gAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACggg                                                 <  1:429758/140‑1 (MQ=255)
                                                                                                 tgctgcATACAGAAGAAGGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTActtcgctt                                    <  1:73980/140‑1 (MQ=255)
                                                                                                             aagaagGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCa                        >  1:114409/1‑140 (MQ=255)
                                                                                                               gaagGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCAtt                      <  1:1337225/140‑1 (MQ=255)
                                                                                                               gaagGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCAtt                      <  2:361340/140‑1 (MQ=255)
                                                                                                                aagGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACTGTCATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTGTTTCAttt                     >  2:837181/1‑140 (MQ=255)
                                                                                                                aagGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCAttt                     >  2:635147/1‑140 (MQ=255)
                                                                                                                aagGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCAttt                     >  1:493160/1‑140 (MQ=255)
                                                                                                                aagGCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCAttt                     >  1:1290717/1‑140 (MQ=255)
                                                                                                                  ggCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCATTTCg                   >  1:1092326/1‑140 (MQ=255)
                                                                                                                  ggCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCATTTCg                   >  2:236375/1‑140 (MQ=255)
                                                                                                                  ggCTGTTGTTAATTTCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGCTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCATTTCg                   >  1:1187161/1‑140 (MQ=255)
                                                                                                                               ttCGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCATTTCGCCCATAGCTTTCa      <  2:928467/140‑1 (MQ=255)
                                                                                                                                 cGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCATTTCGCCCATAGCTTTCAGc    <  2:1092326/140‑1 (MQ=255)
                                                                                                                                 cGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCATTTCGCCCATAGCTTTCAGc    >  2:1170322/1‑140 (MQ=255)
                                                                                                                                 cGATTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCATTTCGCCCATAGCTTTCAGc    >  2:1185027/1‑140 (MQ=255)
                                                                                                                                   aTTGGCTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCATTTCGCCCATAGCTTTCAGCtt  >  2:953558/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                      
ATATCTTTGGTGAAAAGTTGGTTACGGGAAGCTGGAGCGCACAACGTGTTAGTAACCAGTGCAGTTAATAACAATGGAGTTACAGAACTTTTTGCCTTGCTGCATACAGAAGAAGGCTGTTGTTAATTTCGATTGGTTCTCGGATGAGAATGATGACGGTGATACACAGATAAGAATCAATGAGCAATGAGGGTTGCCGGGCAACCCTCATTGAATAAAACGGGAATTACTTCGCTTCGCCGTTTTTCATTTCGCCCATAGCTTTCAGCTT  >  NC_000913/2078806‑2079076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A