Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	159	82.1	2830106	99.3%	2810295	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,139,829	T→C	N595S (AAT→AGT)	asmA ←	putative assembly protein AsmA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,139,829	0	T	C	100.0%	420.2 / NA	111	N595S (AAT→AGT)	asmA	putative assembly protein AsmA
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (46/65); total (46/65)

Only 100 of 112 total aligned reads displayed.

CCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAAATCAATCAGTTTGCT  >  NC_000913/2139694‑2139965

ccACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAg                                                                                                                                      >  1:929691/1‑140 (MQ=255)

             aTGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCt                                                                                                                         <  2:840227/140‑1 (MQ=255)

              tGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCtt                                                                                                                        <  1:1182080/140‑1 (MQ=255)

                cGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCg                                                                                                                      <  2:1058848/140‑1 (MQ=255)

                  aCGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCt                                                                                                                         <  2:1318507/135‑1 (MQ=255)

                  aCGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCt                                                                                                                         >  1:1318507/1‑135 (MQ=255)

                  aCGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTc                                                                                                                    <  2:533636/140‑1 (MQ=255)

                  aCGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTc                                                                                                                    <  1:317986/140‑1 (MQ=255)

                  aCGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTc                                                                                                                    <  1:893157/140‑1 (MQ=255)

                  aCGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTc                                                                                                                    >  1:934908/1‑140 (MQ=255)

                       ttACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTa                                                                                                               <  2:631904/140‑1 (MQ=255)

                             gTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGtt                                                                                                         <  1:1187605/140‑1 (MQ=255)

                             gTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGtt                                                                                                         >  2:1414875/1‑140 (MQ=255)

                               cTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTg                                                                                                       <  1:1297720/140‑1 (MQ=255)

                               cTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTg                                                                                                       >  1:244658/1‑140 (MQ=255)

                               cTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTg                                                                                                       <  2:810731/140‑1 (MQ=255)

                                ttATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTgc                                                                                                      >  1:1137326/1‑140 (MQ=255)

                                ttATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTgc                                                                                                      >  2:304565/1‑140 (MQ=255)

                                 tATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTgcg                                                                                                     <  1:744928/140‑1 (MQ=255)

                                 tATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTgcg                                                                                                     <  2:929691/140‑1 (MQ=255)

                                 tATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTgcg                                                                                                     <  2:486195/140‑1 (MQ=255)

                                  aTCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCg                                                                                                                      >  2:1357/1‑122 (MQ=255)

                                  aTCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTgcgc                                                                                                    <  2:143760/140‑1 (MQ=255)

                                  aTCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTgcgc                                                                                                    <  1:712988/140‑1 (MQ=255)

                                  aTCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTgcgc                                                                                                    <  2:1374984/140‑1 (MQ=255)

                                  aTCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTgcgc                                                                                                    >  2:278422/1‑140 (MQ=255)

                                  aTCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTgcgc                                                                                                    >  1:547934/1‑140 (MQ=255)

                                  aTCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTgcgc                                                                                                    <  2:369772/140‑1 (MQ=255)

                                   tCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCa                                                                                                   <  2:274098/140‑1 (MQ=255)

                                     aGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGt                                                                                                 <  2:606515/140‑1 (MQ=255)

                                         cTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACt                                                                                             <  2:1242198/140‑1 (MQ=255)

                                          tACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTg                                                                                            >  1:1083958/1‑140 (MQ=255)

                                           aCAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTgc                                                                                                      >  2:49094/1‑129 (MQ=255)

                                           aCAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTgc                                                                                                      <  1:49094/129‑1 (MQ=255)

                                           aCAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGa                                                                                           >  2:857382/1‑140 (MQ=255)

                                           aCAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGa                                                                                           >  1:240283/1‑140 (MQ=255)

                                            cAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGAt                                                                                          <  1:688109/140‑1 (MQ=255)

                                             aGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATc                                                                                         <  1:798787/140‑1 (MQ=255)

                                               gACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCa                                                                                       <  1:1414875/140‑1 (MQ=255)

                                                 cTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTg                                                                                                       >  1:625504/1‑122 (MQ=255)

                                                 cTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTg                                                                                                       <  2:625504/122‑1 (MQ=255)

                                                 cTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATc                                                                                         >  1:1287205/1‑136 (MQ=255)

                                                 cTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATc                                                                                         <  2:1287205/136‑1 (MQ=255)

                                                 cTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACt                                                                                     >  1:722146/1‑140 (MQ=255)

                                                 cTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACt                                                                                     >  2:956570/1‑140 (MQ=255)

                                                 cTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACt                                                                                     >  1:1009397/1‑140 (MQ=255)

                                                   ggTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTg                                                                                   <  2:723430/140‑1 (MQ=255)

                                                   ggTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTg                                                                                   <  1:357241/140‑1 (MQ=255)

                                                   ggTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTg                                                                                   <  1:1251524/140‑1 (MQ=255)

                                                    gTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTTAGGCGATGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGc                                                                                  >  1:126912/1‑140 (MQ=255)

                                                    gTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGc                                                                                  >  1:1288407/1‑140 (MQ=255)

                                                    gTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGc                                                                                  >  2:35468/1‑140 (MQ=255)

                                                     tCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCa                                                                                 <  1:857382/140‑1 (MQ=255)

                                                     tCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCa                                                                                 <  1:278422/140‑1 (MQ=255)

                                                      cACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAg                                                                                <  2:283183/140‑1 (MQ=255)

                                                       aCCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTTGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAgg                                                                               <  2:800522/140‑1 (MQ=255)

                                                       aCCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAgg                                                                               <  2:244658/140‑1 (MQ=255)

                                                       aCCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAgg                                                                               <  2:268823/140‑1 (MQ=255)

                                                       aCCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAgg                                                                               <  2:1009397/140‑1 (MQ=255)

                                                       aCCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAgg                                                                               <  2:1137326/140‑1 (MQ=255)

                                                        ccTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGc                                                                              <  2:1083958/140‑1 (MQ=255)

                                                         cTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCt                                                                             >  1:1025181/1‑140 (MQ=255)

                                                          tGGTAACCTACATCTTCTCCATCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTg                                                                            <  2:1288407/140‑1 (MQ=255)

                                                             tAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTaa                                                                         <  1:1020276/140‑1 (MQ=255)

                                                              aaCCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAAt                                                                        <  2:934908/140‑1 (MQ=255)

                                                              aaCCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAAt                                                                        >  1:790192/1‑140 (MQ=255)

                                                                     aTCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTtg                                                                 >  2:243994/1‑140 (MQ=255)

                                                                     aTCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTtg                                                                 >  1:675488/1‑140 (MQ=255)

                                                                      tcttctCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTtgc                                                                >  1:185694/1‑140 (MQ=255)

                                                                          ctcCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGcc                                                            >  2:148913/1‑140 (MQ=255)

                                                                           tcCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCa                                                           >  1:292156/1‑140 (MQ=255)

                                                                            ccAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAg                                                          >  2:41939/1‑140 (MQ=255)

                                                                             cAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGt                                                         <  1:956570/140‑1 (MQ=255)

                                                                              aGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGtt                                                        <  2:722146/140‑1 (MQ=255)

                                                                               gCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTg                                                       >  1:70918/1‑140 (MQ=255)

                                                                                 aaCTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAg                                                                    >  1:490371/1‑125 (MQ=255)

                                                                                 aaCTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAg                                                                    <  2:490371/125‑1 (MQ=255)

                                                                                    ttcttcACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATa                                                  >  1:1241567/1‑140 (MQ=255)

                                                                                        tcACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAAcc                                              <  1:41939/140‑1 (MQ=255)

                                                                                          acaTCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCg                                            <  2:895736/140‑1 (MQ=255)

                                                                                           caTCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGc                                           <  1:35468/140‑1 (MQ=255)

                                                                                             tCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAg                                         <  2:675488/140‑1 (MQ=255)

                                                                                             tCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAg                                         <  1:674602/140‑1 (MQ=255)

                                                                                             tCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAg                                         <  2:1025181/140‑1 (MQ=255)

                                                                                              cTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGc                                        >  1:1088832/1‑140 (MQ=255)

                                                                                              cTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGc                                        >  2:475852/1‑140 (MQ=255)

                                                                                                 tGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGt                                     >  1:669609/1‑140 (MQ=255)

                                                                                                   ccATTACGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTAc                                   <  1:344312/140‑1 (MQ=255)

                                                                                                        tcGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCCCTTGCAGGCTGTAATTGAGTCGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCg                              <  2:626313/139‑1 (MQ=255)

                                                                                                        aCGGGAATCTTTATTCCGCTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAg                                         >  2:120470/1‑129 (MQ=255)

                                                                                                                          cTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAaatcaa            >  1:1287604/1‑140 (MQ=255)

                                                                                                                          cTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAaatcaa            >  1:1090185/1‑140 (MQ=255)

                                                                                                                          cTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAaatcaa            >  1:517073/1‑140 (MQ=255)

                                                                                                                          cTCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAaatcaa            >  2:1079405/1‑140 (MQ=255)

                                                                                                                           tCGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAaatcaat           <  2:519459/140‑1 (MQ=255)

                                                                                                                            cGGCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAaatcaatc          <  1:148913/140‑1 (MQ=255)

                                                                                                                             ggCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAAatcaatca         >  2:67156/1‑140 (MQ=255)

                                                                                                                              gCCCAGTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAAATCAATCAg        <  2:1025367/140‑1 (MQ=255)

                                                                                                                                   gTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAAATCAATCAGTTTGc   <  2:240283/140‑1 (MQ=255)

                                                                                                                                   gTCACTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCC‑CTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAAATCAATCAGTTTGCt  <  1:286431/140‑1 (MQ=255)

CCACGAACGCCTGATGCGACGCTTTACGCGTCTTATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATTCAGGCGACGTTTCGCTTCGTCCTGTAGATGTTTGCGCAGTAACTGATCCACTTGCAGGCTGTAATTGAGTTGCTGCCAGTTGCCATAAACCCGCAGCGGTACTGGCGTTTCTTTCAGGAAATCAATCAGTTTGCT  >  NC_000913/2139694‑2139965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A