Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	159	82.1	2830106	99.3%	2810295	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,190,478	C→T	E145K (GAA→AAA)	yehB ←	putative fimbrial usher protein YehB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,190,478	0	C	T	100.0%	392.6 / NA	109	E145K (GAA→AAA)	yehB	putative fimbrial usher protein YehB
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (59/50); total (59/50)

Only 100 of 110 total aligned reads displayed.

TGCCACCCCAGTAAATTTAACCCGCTGTTAAAACGTACATATGTACTCTTGTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTCCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTCAAATGTTAAACATTGCTTACCG  >  NC_000913/2190342‑2190611

  ccACCCCAGTAAATTTAACCCGCTGTTAAAACGTACATATGTACTCTTGTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTg                                                                                                                                  >  2:1372278/1‑140 (MQ=255)

   cACCCCAGTAAATTTAACCCGCTGTTAAAACGTACATATGTACTCTTGTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTgg                                                                                                                                 <  1:1374989/140‑1 (MQ=255)

             aaTTTAACCCGCTGTTAAAACGTACATATGTACTCTTGTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAGGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCa                                                                                                                       >  2:896682/1‑140 (MQ=255)

             aaTTTAACCCGCTGTTAAAACGTACATATGTACTCTTGTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCa                                                                                                                       <  1:1245250/140‑1 (MQ=255)

                  aaCCCGCTGTTAAAACGTACATATGTACTCTTGTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTc                                                                                                                  >  1:190940/1‑140 (MQ=255)

                     ccGCTGTTAAAACGTACATATGTACTCTTGTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAg                                                                                                               <  1:77599/140‑1 (MQ=255)

                     ccGCTGTTAAAACGTACATATGTACTCTTGTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAg                                                                                                               >  1:370442/1‑140 (MQ=255)

                        cTGTTAAAACGTACATATGTACTCTTGTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGttc                                                                                                            >  1:769830/1‑140 (MQ=255)

                         tGTTAAAACGTACATATGTACTCTTGTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGttct                                                                                                           >  1:427328/1‑140 (MQ=255)

                          gTTAAAACGTACATATGTACTCTTGTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAGGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGttctt                                                                                                          <  1:896682/140‑1 (MQ=255)

                          gTTAAAACGTACATATGTACTCTTGTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGttctt                                                                                                          <  1:1301039/140‑1 (MQ=255)

                          gTTAAAACGTACATATGTACTCTTGTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGttctt                                                                                                          <  1:214211/140‑1 (MQ=255)

                                aCGTACATATGTACTCTTGTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCAccc                                                                                                    <  2:727766/140‑1 (MQ=255)

                                   tACATATGTACTCTTGTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAgg                                                                                                 >  2:623234/1‑140 (MQ=255)

                                           tACTCTTGTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCggg                                                                                         >  2:857353/1‑140 (MQ=255)

                                                ttGTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACt                                                                                    >  2:886323/1‑140 (MQ=255)

                                                ttGTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACt                                                                                    >  2:220362/1‑140 (MQ=255)

                                                ttGTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGAATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACt                                                                                    >  1:135493/1‑140 (MQ=255)

                                                 ttttattaCCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTg                                                                                   >  1:869320/3‑140 (MQ=255)

                                                  gTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAg                                                                                                  >  2:246936/1‑124 (MQ=255)

                                                  gTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAg                                                                                                  <  1:246936/124‑1 (MQ=255)

                                                  gTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGa                                                                                  >  1:1322673/1‑140 (MQ=255)

                                                  gTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGa                                                                                  >  2:145648/1‑140 (MQ=255)

                                                  gTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGa                                                                                  >  1:1092139/1‑140 (MQ=255)

                                                  gTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGa                                                                                  >  1:830771/1‑140 (MQ=255)

                                                  gTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATA‑CCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGaa                                                                                 >  2:938373/1‑140 (MQ=255)

                                                   ttattaCCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGaa                                                                                 >  1:377982/1‑140 (MQ=255)

                                                     attaCCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAAt                                                                               >  2:185132/1‑140 (MQ=255)

                                                     attaCCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGCGCAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAAt                                                                               <  2:935946/140‑1 (MQ=255)

                                                       taCCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGa                                                                                        >  2:1367723/1‑129 (MQ=255)

                                                       taCCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGa                                                                                        <  1:1367723/129‑1 (MQ=255)

                                                       taCCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCg                                                                             <  1:423608/140‑1 (MQ=255)

                                                          ccGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCgaga                                                                          >  2:253232/1‑140 (MQ=255)

                                                             aCGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGa                                                                       >  1:1101001/1‑140 (MQ=255)

                                                             aCGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGa                                                                       >  2:1171123/1‑140 (MQ=255)

                                                             aCGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGa                                                                       <  2:640193/140‑1 (MQ=255)

                                                              cGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGaa                                                                      >  1:861043/1‑140 (MQ=255)

                                                                      aGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCg                                                              <  1:383401/140‑1 (MQ=255)

                                                                      aGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCg                                                              <  1:827714/140‑1 (MQ=255)

                                                                      aGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCg                                                              <  2:158548/140‑1 (MQ=255)

                                                                      aGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCg                                                              <  1:240018/140‑1 (MQ=255)

                                                                      aGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCg                                                              <  1:220362/140‑1 (MQ=255)

                                                                        tCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGat                                                            <  1:185132/140‑1 (MQ=255)

                                                                           cTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCgag                                                                           <  2:1024069/122‑1 (MQ=255)

                                                                           cTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCgag                                                                           >  1:1024069/1‑122 (MQ=255)

                                                                           cTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCg                                                              <  2:28932/135‑1 (MQ=255)

                                                                           cTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCg                                                              >  1:28932/1‑135 (MQ=255)

                                                                           cTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATc                                                         >  1:1014824/1‑140 (MQ=255)

                                                                           cTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATc                                                         >  1:1372480/1‑140 (MQ=255)

                                                                             gTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATccc                                                       <  1:1171123/140‑1 (MQ=255)

                                                                             gTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATccc                                                       <  1:253232/140‑1 (MQ=255)

                                                                             gTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATccc                                                       <  2:1092139/140‑1 (MQ=255)

                                                                                 tACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGt                                                   <  2:102669/140‑1 (MQ=255)

                                                                                  aCTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGta                                                  <  1:623234/140‑1 (MQ=255)

                                                                                      aCTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGc                                              >  2:519186/1‑140 (MQ=255)

                                                                                      aCTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGc                                              >  2:584919/1‑140 (MQ=255)

                                                                                      aCTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGc                                              >  2:740604/1‑140 (MQ=255)

                                                                                      aCTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGc                                              >  2:885227/1‑140 (MQ=255)

                                                                                      aCTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGc                                              >  1:300563/1‑140 (MQ=255)

                                                                                        tCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTc                                            >  1:1004399/1‑140 (MQ=255)

                                                                                        tCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTc                                            >  2:806367/1‑140 (MQ=255)

                                                                                        tCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTc                                            <  2:1322673/140‑1 (MQ=255)

                                                                                         cAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTcc                                           <  1:145648/140‑1 (MQ=255)

                                                                                         cAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTcc                                           <  1:97603/140‑1 (MQ=255)

                                                                                         cAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTcc                                           <  2:830771/140‑1 (MQ=255)

                                                                                          aGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTc                                            <  1:889660/138‑1 (MQ=255)

                                                                                          aGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTc                                            >  2:889660/1‑138 (MQ=255)

                                                                                             taataaGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCAcc                                       <  1:519186/140‑1 (MQ=255)

                                                                                                  agagGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGATATAGCTCCCACCCTGaa                                  >  2:502093/1‑140 (MQ=255)

                                                                                                    agGTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACa                                >  1:110975/1‑140 (MQ=255)

                                                                                                      gTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTc                                            >  2:1246/1‑126 (MQ=255)

                                                                                                      gTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTc                                            <  1:1246/126‑1 (MQ=255)

                                                                                                      gTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCAc                                        >  1:940096/1‑130 (MQ=255)

                                                                                                      gTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCAc                                        <  2:940096/130‑1 (MQ=255)

                                                                                                      gTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAg                              >  1:1137246/1‑140 (MQ=255)

                                                                                                      gTATAAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAG‑CACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGt                             >  1:805386/1‑140 (MQ=255)

                                                                                                         taAAACGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTg                           >  2:265927/1‑140 (MQ=255)

                                                                                                            ggacagttAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTc                        <  1:1232072/134‑1 (MQ=255)

                                                                                                            aaCGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTc                        <  1:806367/140‑1 (MQ=255)

                                                                                                            aaCGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTc                        <  1:740604/140‑1 (MQ=255)

                                                                                                            aaCGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTc                        <  1:1110292/140‑1 (MQ=255)

                                                                                                            aaCGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTc                        <  2:769830/140‑1 (MQ=255)

                                                                                                            aaCGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTc                        <  1:1355648/140‑1 (MQ=255)

                                                                                                            aaCGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTc                        <  2:190940/140‑1 (MQ=255)

                                                                                                            aaCGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTc                        <  2:398742/140‑1 (MQ=255)

                                                                                                              cGCATTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTCaa                      <  2:861043/140‑1 (MQ=255)

                                                                                                                 aTTAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTCAAATg                   >  1:127596/1‑140 (MQ=255)

                                                                                                                   tAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTCAAATGtt                 >  1:201269/1‑140 (MQ=255)

                                                                                                                   tAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTCAAATGtt                 <  1:139359/140‑1 (MQ=255)

                                                                                                                   tAATACCCCGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTCAAATGtt                 <  1:886323/140‑1 (MQ=255)

                                                                                                                           cGCTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTCAAATGTTAAACATTg         >  1:318880/1‑140 (MQ=255)

                                                                                                                             cTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTCaa                      <  1:1392980/125‑1 (MQ=255)

                                                                                                                             cTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTCaa                      >  2:1392980/1‑125 (MQ=255)

                                                                                                                             cTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTCAAATGTTAAACATTGCt       >  1:328709/1‑140 (MQ=255)

                                                                                                                             cTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTCAAATGTTAAACATTGCt       >  1:965747/1‑140 (MQ=255)

                                                                                                                             cTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTCAAATGTTAAACATTGCt       <  2:135493/140‑1 (MQ=255)

                                                                                                                             cTCCCAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTCAAATGTTAAACATTGCt       >  2:573312/1‑140 (MQ=255)

                                                                                                                             cTCCCAGATTTTCGGCGGAACATAGCCACTTTCCAGTTCTTCCACCCAAGCCTGCGGGGCCCTGAAATCCAGCCGAAAAACCCCCAAATCCCAGGTATAGCTCCCACCCTGAACCAGGTGCTCCAATGATAAAcctgtct       >  2:1232072/1‑134 (MQ=255)

                                                                                                                                ccAGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTCAAATGTTAAACATTGCTTAc    <  1:67330/140‑1 (MQ=255)

                                                                                                                                  aGTTTTTCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTCAAATGTTAAACATTGCTTACCg  <  2:1372480/140‑1 (MQ=255)

TGCCACCCCAGTAAATTTAACCCGCTGTTAAAACGTACATATGTACTCTTGTTATTACCCGACGCTTTATAGTCGCTGTAATACTGACTCAGATAATAAGAGGTATAAAACGCATTAATACCCCGCTCCCAGTTTTCCGGTGGAACATAGCCACTTTCCAGTTCTTCCACCCAGGCCTGCGGGACACTGAAATCGAGACGAAAAACCCCGATATCCCAGGTATAGCTCCCACCCTGAACAAGTTGCTCAAATGTTAAACATTGCTTACCG  >  NC_000913/2190342‑2190611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A