Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	159	82.1	2830106	99.3%	2810295	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,259,392	T→C	intergenic (‑96/+327)	psuK ← / ← fruA	putative pseudouridine kinase/fructose‑specific PTS multiphosphoryl transfer protein FruA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,259,392	0	T	C	100.0%	369.6 / NA	100	intergenic (‑96/+327)	psuK/fruA	putative pseudouridine kinase/fructose‑specific PTS multiphosphoryl transfer protein FruA
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (52/48); total (52/48)

Only 100 of 102 total aligned reads displayed.

TTCGCCGAACCTATAATTACGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGTGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGATGCACAGAA  >  NC_000913/2259256‑2259526

ttCGCCGAACCTATAATTACGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCt                                                                                                                                     <  2:675273/140‑1 (MQ=255)

ttCGCCGAACCTATAATTACGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCt                                                                                                                                     <  2:316760/140‑1 (MQ=255)

ttCGCCGAACCTATAATTACGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCt                                                                                                                                     <  1:824070/140‑1 (MQ=255)

ttCGCCGAACCTATAATTACGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCt                                                                                                                                     <  1:82957/140‑1 (MQ=255)

  cGCCGAACCTATAATTACGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCa                                                                                                                                   >  2:788299/1‑140 (MQ=255)

  cGCCGAACCTATAATTACGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCa                                                                                                                                   <  2:109303/140‑1 (MQ=255)

   gCCGAACCTATAATTACGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCAt                                                                                                                                  >  2:711702/1‑140 (MQ=255)

        aCCTATAATTACGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTAt                                                                                                                             >  2:647904/1‑140 (MQ=255)

          cTATAATTACGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGc                                                                                                                           <  1:647904/140‑1 (MQ=255)

             taATTACGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATg                                                                                                                        >  1:688143/1‑140 (MQ=255)

                  aCGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCt                                                                                                                                     >  1:1386636/1‑122 (MQ=255)

                  aCGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCt                                                                                                                                     <  2:1386636/122‑1 (MQ=255)

                   cGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTAc                                                                                                                  >  1:871629/1‑140 (MQ=255)

                    gACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCAt                                                                                                                                  <  2:1073047/123‑1 (MQ=255)

                    gACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCAt                                                                                                                                  >  1:1073047/1‑123 (MQ=255)

                    gACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACg                                                                                                                 <  1:538137/140‑1 (MQ=255)

                    gACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACg                                                                                                                 >  2:981510/1‑140 (MQ=255)

                    gACATAATCCTTTTCGCGCACAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACg                                                                                                                 >  2:1414592/1‑140 (MQ=255)

                       aTAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACgtaa                                                                                                              <  2:1351156/140‑1 (MQ=255)

                              ttttCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATATTATGCATGTTTTACGTAAAGTAAAt                                                                                                       <  2:1001463/140‑1 (MQ=255)

                                ttCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTa                                                                                                     >  1:1099939/1‑140 (MQ=255)

                                ttCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTa                                                                                                     >  1:691480/1‑140 (MQ=255)

                                 tCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTAc                                                                                                    >  2:1161135/1‑140 (MQ=255)

                                         aGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCagag                                                                                            >  1:1025323/1‑140 (MQ=255)

                                                ccTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCaaa                                                                                     >  2:257621/1‑140 (MQ=255)

                                                ccTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCaaa                                                                                     <  1:868095/140‑1 (MQ=255)

                                                   ctGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATg                                                                                  >  2:69635/1‑140 (MQ=255)

                                                   ctGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATg                                                                                  >  1:344066/1‑140 (MQ=255)

                                                   ctGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATg                                                                                  >  2:1088105/1‑140 (MQ=255)

                                                   ctGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATg                                                                                  >  1:552749/1‑140 (MQ=255)

                                                     ggTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATggg                                                                                <  2:1099939/140‑1 (MQ=255)

                                                     ggTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATggg                                                                                <  1:788854/140‑1 (MQ=255)

                                                     ggTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATggg                                                                                >  1:137284/1‑140 (MQ=255)

                                                     ggTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTCCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATggg                                                                                <  2:691480/140‑1 (MQ=255)

                                                               tACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAg                                                                      <  1:1161135/140‑1 (MQ=255)

                                                               tACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAg                                                                      <  1:326216/140‑1 (MQ=255)

                                                               tACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAg                                                                      <  2:137284/140‑1 (MQ=255)

                                                                 ccAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCa                                                                    <  2:871629/140‑1 (MQ=255)

                                                                 ccAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCa                                                                    <  1:788299/140‑1 (MQ=255)

                                                                        tGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTcac                                                             >  1:335315/1‑140 (MQ=255)

                                                                           cAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACaaa                                                          <  2:688143/140‑1 (MQ=255)

                                                                                    aGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTa                                                 >  2:1284846/1‑140 (MQ=255)

                                                                                    aGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTa                                                 >  1:1314681/1‑140 (MQ=255)

                                                                                       atatAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAAt                                              <  1:1284846/140‑1 (MQ=255)

                                                                                            gATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTg                                         <  2:611059/140‑1 (MQ=255)

                                                                                             aTACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGa                                        >  2:30321/1‑140 (MQ=255)

                                                                                               aCTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAAt                                      >  1:824808/1‑140 (MQ=255)

                                                                                               aCTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAAt                                      >  1:1145287/1‑140 (MQ=255)

                                                                                                cTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAAtt                                     >  2:10532/1‑140 (MQ=255)

                                                                                                cTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAAtt                                     >  1:1278935/1‑140 (MQ=255)

                                                                                                cTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAAtt                                     >  1:606664/1‑140 (MQ=255)

                                                                                                cTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAAtt                                     >  2:1168357/1‑140 (MQ=255)

                                                                                                cTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAAtt                                     >  1:192107/1‑140 (MQ=255)

                                                                                                cTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAAtt                                     >  1:435941/1‑140 (MQ=255)

                                                                                                 tGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTa                                                 <  2:225613/127‑1 (MQ=255)

                                                                                                 tGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTa                                                 >  1:225613/1‑127 (MQ=255)

                                                                                                 tGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGc                                            <  2:1373441/132‑1 (MQ=255)

                                                                                                 tGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGc                                            >  1:1373441/1‑132 (MQ=255)

                                                                                                 tGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTa                                    >  1:1094551/1‑140 (MQ=255)

                                                                                                 tGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTa                                    >  1:1373743/1‑140 (MQ=255)

                                                                                                 tGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTa                                    >  1:1284230/1‑140 (MQ=255)

                                                                                                   cAAAGCCGGATTAAACATGTGTTGATATTTAAACATGCGCTGATAGGATGCATGTTCTCCGTAAAGTAAATTACCGCCAGCGAGGGAAGATGAGCAGATTTGAGCAGCCTCACAGAGTGCGTTTAAATGCCTTAATTaaa                                  <  2:635937/140‑3 (MQ=255)

                                                                                                   cAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACa                                  >  2:633618/1‑140 (MQ=255)

                                                                                                   cAAAGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACa                                  >  1:367052/1‑140 (MQ=255)

                                                                                                    aaaGACGGTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACaa                                 >  1:1219834/1‑140 (MQ=255)

                                                                                                           gTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAGATGCCTGAATTACAAAAGCg                            >  1:999796/1‑138 (MQ=255)

                                                                                                           gTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAg                          >  2:836703/1‑140 (MQ=255)

                                                                                                           gTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAg                          >  1:941038/1‑140 (MQ=255)

                                                                                                           gTTTAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAg                          >  2:524865/1‑140 (MQ=255)

                                                                                                             ttAAACATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAAAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGa                        >  2:245536/1‑140 (MQ=255)

                                                                                                               aaaCATGTGTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAAt                      <  1:524865/140‑1 (MQ=255)

                                                                                                                    tgtgTTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTtgtg                 <  2:435941/140‑1 (MQ=255)

                                                                                                                      tgtTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGAc               >  1:592753/1‑140 (MQ=255)

                                                                                                                      tgtTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGAc               >  1:1182513/1‑140 (MQ=255)

                                                                                                                      tgtTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGAc               >  1:984968/1‑140 (MQ=255)

                                                                                                                      tgtTCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGAc               >  2:356167/1‑140 (MQ=255)

                                                                                                                         tCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACggg            <  1:711702/140‑1 (MQ=255)

                                                                                                                         tCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACggg            <  2:941038/140‑1 (MQ=255)

                                                                                                                         tCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACggg            <  1:257621/140‑1 (MQ=255)

                                                                                                                         tCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACggg            <  1:69635/140‑1 (MQ=255)

                                                                                                                         tCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACggg            <  2:1278935/140‑1 (MQ=255)

                                                                                                                         tCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACggg            <  1:30321/140‑1 (MQ=255)

                                                                                                                         tCATATTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACggg            <  1:274413/140‑1 (MQ=255)

                                                                                                                         tCATATTTAAACATGCACTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCTAGGAATTTGTGACggg            <  2:1282774/140‑1 (MQ=255)

                                                                                                                             atTTAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCTTGAATTACAAAAGCGAGGAATTTGTGACGGGATGc        >  2:973802/1‑140 (MQ=255)

                                                                                                                              tttAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGATGca       <  2:1219834/140‑1 (MQ=255)

                                                                                                                              tttAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGATGca       <  2:1373743/140‑1 (MQ=255)

                                                                                                                              tttAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGATGca       <  1:1414592/140‑1 (MQ=255)

                                                                                                                              tttAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGATGca       <  2:1182513/140‑1 (MQ=255)

                                                                                                                              tttAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGATGca       <  1:583101/140‑1 (MQ=255)

                                                                                                                              tttAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGATGca       <  2:1325790/140‑1 (MQ=255)

                                                                                                                              tttAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGATGca       <  1:836703/140‑1 (MQ=255)

                                                                                                                              tttAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGATGca       <  2:1314681/140‑1 (MQ=255)

                                                                                                                               ttAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGAt          >  2:432718/1‑136 (MQ=255)

                                                                                                                               ttAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGAt          <  1:432718/136‑1 (MQ=255)

                                                                                                                                tAAACATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGATGcaca     >  1:820495/1‑140 (MQ=255)

                                                                                                                                  aaCATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGATGCacaga   >  1:1090701/1‑140 (MQ=255)

                                                                                                                                   aCATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGATGCacagaa  <  2:192107/140‑1 (MQ=255)

                                                                                                                                   aCATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGATGCacagaa  <  2:109150/140‑1 (MQ=255)

                                                                                                                                   aCATGCGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGATGCacagaa  <  2:548894/140‑1 (MQ=255)

TTCGCCGAACCTATAATTACGACATAATCCTTTTCGCGCATAGCACGTCCTCTGGTAAAAAATTACCAACCCTGTCAATCCACAAGAATATAGATACTGCAAAGACGGTTTAAACATGTGTTCATATTTAAACATGTGCTCATAGTATGCATGTTTTACGTAAAGTAAATTACCGCCAGAGAGGCAAAATGGGCAGATTTGAGCAGGCTCACAAAATGCGATTAAATGCCTGAATTACAAAAGCGAGGAATTTGTGACGGGATGCACAGAA  >  NC_000913/2259256‑2259526

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A