Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 159 82.1 2830106 99.3% 2810295 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,269,260 T→C V136A (GTT→GCT)  lpxT → Kdo2‑lipid A phosphotransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,269,2600TC100.0% 337.8 / NA 90V136A (GTT→GCT) lpxTKdo2‑lipid A phosphotransferase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (55/35);  total (55/35)

ATCGTGATTATTGGTCTGGTCATGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGTTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGCCTTATCGCCCTTATTATTTTTGTGGTTTTTGCA  >  NC_000913/2269124‑2269396
                                                                                                                                        |                                                                                                                                        
aTCGTGATTATTGGTCTGGTCATGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTcc                                                                                                                                       >  2:693405/1‑140 (MQ=255)
    tGATTATTGGTCTGGTCATGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACg                                                                                                                                   >  1:34791/1‑140 (MQ=255)
      attattGGTCTGGTCATGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGaa                                                                                                                                 >  1:884578/1‑140 (MQ=255)
      attattGGTCTGGTCATGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGaa                                                                                                                                 >  1:761831/1‑140 (MQ=255)
      attattGGTCTGGTCATGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGaa                                                                                                                                 >  1:367193/1‑140 (MQ=255)
        tattGGTCTGGTCATGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGT‑AAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGa                                                                                                                              <  1:1411305/140‑1 (MQ=255)
         attGGTCTGGTCATGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGa                                                                                                                              <  1:123789/140‑1 (MQ=255)
           tggtctggtcATGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCATGAAAGATg                                                                                                                            <  1:1249276/140‑1 (MQ=255)
           tggtctggtcATGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATg                                                                                                                            <  2:34791/140‑1 (MQ=255)
           tggtctggtcATGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATg                                                                                                                            <  1:882091/140‑1 (MQ=255)
              tctggtcATGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCt                                                                                                                         <  2:1187154/140‑1 (MQ=255)
              tctggtcATGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCt                                                                                                                         <  1:198080/140‑1 (MQ=255)
                tggtcATGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCa                                                                                                                       <  2:9307/140‑1 (MQ=255)
                tggtcATGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCa                                                                                                                       >  1:677123/1‑140 (MQ=255)
                tggtcATGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCa                                                                                                                       <  1:1127727/140‑1 (MQ=255)
                  gtcATGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACg                                                                                                                     >  1:1022967/1‑140 (MQ=255)
                  gtcATGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACg                                                                                                                     >  2:1226710/1‑140 (MQ=255)
                      tGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGAt                                                                                                                 >  1:54901/1‑140 (MQ=255)
                      tGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGAt                                                                                                                 <  1:383380/140‑1 (MQ=255)
                       gCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATa                                                                                                                >  1:37468/1‑140 (MQ=255)
                        cTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATg                                                                                                                            >  1:199051/1‑127 (MQ=255)
                        cTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATg                                                                                                                            <  2:199051/127‑1 (MQ=255)
                            tAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCttt                                                                                                           >  2:1037490/1‑140 (MQ=255)
                            tAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCttt                                                                                                           >  2:786660/1‑140 (MQ=255)
                                 gCAGTGGTATTAAACCAGCT‑GGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGc                                                                                                     >  1:86266/1‑140 (MQ=255)
                                  cAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGc                                                                                                     >  2:685491/1‑140 (MQ=255)
                                  cAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGc                                                                                                     >  2:614038/1‑140 (MQ=255)
                                  cAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGc                                                                                                     >  1:389795/1‑140 (MQ=255)
                                  cAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGc                                                                                                     >  1:1089161/1‑140 (MQ=255)
                                  cAGTGGGATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGc                                                                                                     >  1:251839/1‑140 (MQ=255)
                                   aGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCg                                                                                                    >  1:1280689/1‑140 (MQ=255)
                                     tGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGAt                                                                                                  >  1:1137392/1‑140 (MQ=255)
                                     tGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGAt                                                                                                  <  2:1033695/140‑1 (MQ=255)
                                     tGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGAt                                                                                                  >  1:1187708/1‑140 (MQ=255)
                                     tGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGAt                                                                                                  >  1:485171/1‑140 (MQ=255)
                                     tGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGAt                                                                                                  >  1:436849/1‑140 (MQ=255)
                                       gTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCa                                                                                                >  1:690911/1‑140 (MQ=255)
                                       gTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCa                                                                                                <  1:693405/140‑1 (MQ=255)
                                         aTTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACg                                                                                              <  2:54901/140‑1 (MQ=255)
                                          ttAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTcc                                                                                                         <  1:541649/128‑1 (MQ=255)
                                          ttAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTcc                                                                                                         >  2:541649/1‑128 (MQ=255)
                                          ttAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACgg                                                                                             >  2:298432/1‑140 (MQ=255)
                                          ttAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACgg                                                                                             >  2:234125/1‑140 (MQ=255)
                                            aaaCCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCa                                                                                           <  2:1057181/140‑1 (MQ=255)
                                            aaaCCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCa                                                                                           <  2:677123/140‑1 (MQ=255)
                                               ccAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACTGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCatga                                                                                        >  2:1284779/1‑140 (MQ=255)
                                                 aGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCatgatg                                                                                      >  2:1164295/1‑140 (MQ=255)
                                                 aGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCatgatg                                                                                      >  1:860521/1‑140 (MQ=255)
                                                 aGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCatgatg                                                                                      >  1:371541/1‑140 (MQ=255)
                                                  gCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGAt                                                                                                  <  1:1187755/127‑1 (MQ=255)
                                                  gCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGAt                                                                                                  >  2:1187755/1‑127 (MQ=255)
                                                  gCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGAtgc                                                                                     >  1:29685/1‑140 (MQ=255)
                                                  gCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGAtgc                                                                                     >  1:387147/1‑140 (MQ=255)
                                                  gCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGAtgc                                                                                     >  2:627850/1‑140 (MQ=255)
                                                  gCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGAtgc                                                                                     >  2:1127476/1‑140 (MQ=255)
                                                        tCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTa                                                                               >  1:1263658/1‑140 (MQ=255)
                                                              aTTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTAtttttt                                                                         <  1:1226710/140‑1 (MQ=255)
                                                              aTTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTAtttttt                                                                         <  2:1022967/140‑1 (MQ=255)
                                                                 aaTTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCgg                                                                      <  2:1187708/140‑1 (MQ=255)
                                                                      cTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTc                                                                 >  2:795582/1‑140 (MQ=255)
                                                                        gTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCAt                                                               >  1:813477/1‑140 (MQ=255)
                                                                        gTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCAt                                                               >  1:478814/1‑140 (MQ=255)
                                                                         tAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCAtg                                                              <  2:389795/140‑1 (MQ=255)
                                                                         tAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCAtg                                                              <  2:251839/140‑1 (MQ=255)
                                                                                  ccAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTAt                                                     >  2:1065605/1‑140 (MQ=255)
                                                                                  ccAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTAt                                                     >  2:1026463/1‑140 (MQ=255)
                                                                                               gACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTg                                        <  1:1037490/140‑1 (MQ=255)
                                                                                                aCTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGc                                       >  1:972953/1‑140 (MQ=255)
                                                                                                aCTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGc                                       <  1:1164295/140‑1 (MQ=255)
                                                                                                    ttACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGc                                   >  2:548441/1‑140 (MQ=255)
                                                                                                     tACCGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGcc                                  >  1:1230332/1‑140 (MQ=255)
                                                                                                        cGATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGCCTTa                               <  2:1263658/140‑1 (MQ=255)
                                                                                                         gATATTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGCCTTAt                              <  1:529069/140‑1 (MQ=255)
                                                                                                          atatTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGCCTTATc                             <  2:436849/140‑1 (MQ=255)
                                                                                                          atatTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCAAGGCATGATGCTGCTTATTTTTTCCGAATTCATGTGGCGTTATTTCGGCACCGTTGCAGTCCTTATc                             >  2:1243953/1‑140 (MQ=255)
                                                                                                           tatTAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGCCTTATCg                            <  2:690911/140‑1 (MQ=255)
                                                                                                             ttAACCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGCCTTATCGcc                          <  2:371541/140‑1 (MQ=255)
                                                                                                                aCCGCGTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGCCTTATCGCCCtt                       >  2:1245929/1‑140 (MQ=255)
                                                                                                                  cgcgTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGCCTTATCGCCCttat                     >  1:214647/1‑140 (MQ=255)
                                                                                                                  cgcgTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGCCTTATCGCCCttat                     >  1:897509/1‑140 (MQ=255)
                                                                                                                   gcgTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGCCTTATCGCCCttatt                    >  1:332226/1‑140 (MQ=255)
                                                                                                                     gTCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGCCTTATCGCCCTtattat                  >  1:594765/1‑140 (MQ=255)
                                                                                                                      tCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGCCTTATCGCCCTTattatt                 >  2:719709/1‑140 (MQ=255)
                                                                                                                      tCAGCGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGCCTTATCGCCCTTattatt                 >  2:881608/1‑140 (MQ=255)
                                                                                                                          cGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGCCTTATCGCCCTTATTATTTTtg             <  1:298432/140‑1 (MQ=255)
                                                                                                                          cGAACTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGCCTTATCGCCCTTATTATTTTtg             <  2:1089161/140‑1 (MQ=255)
                                                                                                                              cTGCTCTCTGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGCCTTATCGCCCTTATTATTTTTGTGGt         <  2:1280689/140‑1 (MQ=255)
                                                                                                                                 ctctctGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGCCTTATCGCCCTTATTATTTTTGTGGtttt      >  1:1357760/1‑140 (MQ=255)
                                                                                                                                     ctGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGCCTTATCGCCCTTATTATTTTTGTGGTTTTTGCa  <  1:234125/140‑1 (MQ=255)
                                                                                                                                     ctGCTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGCCTTATCGCCCTTATTATTTTTGTGGTTTTTGCa  <  2:860521/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
ATCGTGATTATTGGTCTGGTCATGCTATTAACTGCAGTGGTATTAAACCAGCTGGGTCAGGCATTAATTCCTGTAAAACGGGCCAGCCCAACATTGACTTTTACCGATATTAACCGCGTCAGCGAACTGCTCTCTGTTCCCACGAAAGATGCCTCACGAGATAGCTTTCCCGGCGATCACGGCATGATGCTGCTTATTTTTTCGGCATTCATGTGGCGTTATTTCGGCAAAGTTGCAGGCCTTATCGCCCTTATTATTTTTGTGGTTTTTGCA  >  NC_000913/2269124‑2269396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A