Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	159	82.1	2830106	99.3%	2810295	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,339,206	T→C	D72G (GAC→GGC)	gyrA ←	DNA gyrase subunit A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,339,206	0	T	C	98.7%	293.1 / ‑6.2	79	D72G (GAC→GGC)	gyrA	DNA gyrase subunit A
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (49/29); total (49/30)
Fisher's exact test for biased strand distribution p-value = 3.80e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CCGCAGAGTCGCCGTCGATAGAACCGAAGTTACCCTGACCGTCTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGTCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAGCGCACGGCCAACAATGACCG  >  NC_000913/2339069‑2339341

ccgcAGAGTCGCCGTCGATAGAACCGAAGTTACCCTGACCGTCTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCa                                                                                                                                       >  1:31804/1‑140 (MQ=255)

        tCGCCGTCGATAGAACCGAAGTTACCCTGACCGTCTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGac                                                                                                                               <  2:319797/140‑1 (MQ=255)

                  tAGAACCGAAGTTACCCTGACCGTCTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGAt                                                                                                                     >  1:992382/1‑140 (MQ=255)

                            gTTACCCTGACCGTCTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAgg                                                                                                           <  2:639578/140‑1 (MQ=255)

                            gTTACCCTGACCGTCTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAgg                                                                                                           >  1:880803/1‑140 (MQ=255)

                               aCCCTGACCGTCTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCtt                                                                                                        >  1:538609/1‑140 (MQ=255)

                               aCCCTGACCGTCTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCtt                                                                                                        >  1:979841/1‑140 (MQ=255)

                                     aCCGTCTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTcc                                                                                                  >  2:604395/1‑140 (MQ=255)

                                          cTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCa                                                                                             <  2:362680/140‑1 (MQ=255)

                                          cTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCa                                                                                             >  1:143951/1‑140 (MQ=255)

                                          cTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCa                                                                                             <  1:756135/140‑1 (MQ=255)

                                            aCCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCAtt                                                                                           <  2:1208998/140‑1 (MQ=255)

                                               aGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGcc                                                                                        <  1:167005/140‑1 (MQ=255)

                                               aGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGcc                                                                                        <  2:294383/140‑1 (MQ=255)

                                                 cATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTa                                                                                      >  1:1267129/1‑140 (MQ=255)

                                                  atatAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAg                                                                                     <  1:293409/140‑1 (MQ=255)

                                                   tataACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGt                                                                                    >  1:269994/1‑140 (MQ=255)

                                                    ataACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTa                                                                                   >  1:493715/1‑140 (MQ=255)

                                                     taACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTAc                                                                                  >  2:565053/1‑140 (MQ=255)

                                                      aaCGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACg                                                                                 >  1:1035975/1‑140 (MQ=255)

                                                       aCGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTcc                                                                                                  <  2:140150/122‑1 (MQ=255)

                                                       aCGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTcc                                                                                                  >  1:140150/1‑122 (MQ=255)

                                                        cGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGtt                                                                               >  1:1276655/1‑140 (MQ=255)

                                                         gCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGTCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTc                                                                              <  2:979841/140‑1 (MQ=255)

                                                         gCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTc                                                                              <  2:423077/140‑1 (MQ=255)

                                                           aGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGc                                                                                         <  1:485110/127‑1 (MQ=255)

                                                           aGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGc                                                                                         >  2:485110/1‑127 (MQ=255)

                                                           aGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCAt                                                                            >  2:728989/1‑140 (MQ=255)

                                                           aGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCAt                                                                            >  1:1334047/1‑140 (MQ=255)

                                                           aGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCAt                                                                            >  2:89248/1‑140 (MQ=255)

                                                             cGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTg                                                                                          >  2:564659/1‑124 (MQ=255)

                                                             cGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTg                                                                                          <  1:564659/124‑1 (MQ=255)

                                                             cGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATgg                                                                          >  2:226035/1‑140 (MQ=255)

                                                                 aaTGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTa                                                                      <  2:387311/140‑1 (MQ=255)

                                                                 aaTGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTa                                                                      <  2:492744/140‑1 (MQ=255)

                                                                   tGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTaaa                                                                    <  1:728989/140‑1 (MQ=255)

                                                                       tGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTAc                                                                >  1:612010/1‑140 (MQ=255)

                                                                        gcgcCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTAcg                                                               <  2:1276655/140‑1 (MQ=255)

                                                                                   aCGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTAc                                                    <  1:345034/140‑1 (MQ=255)

                                                                                    cGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTAcc                                                   <  2:992382/140‑1 (MQ=255)

                                                                                        cGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTAcgcg                                                             >  1:1265491/1‑126 (MQ=255)

                                                                                        cGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTAcgcg                                                             <  2:1265491/126‑1 (MQ=255)

                                                                                          tgtCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTc                                             >  2:716249/1‑140 (MQ=255)

                                                                                          tgtCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTc                                             >  2:725789/1‑140 (MQ=255)

                                                                                            tCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAg                                           <  2:1334047/140‑1 (MQ=255)

                                                                                             cATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAgg                                          <  2:143951/140‑1 (MQ=255)

                                                                                             cATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAgg                                          <  2:612010/140‑1 (MQ=255)

                                                                                              aTAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGc                                         <  2:1316041/140‑1 (MQ=255)

                                                                                                aGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCa                                       <  1:716249/140‑1 (MQ=255)

                                                                                                 gACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCAt                                      >  1:1330259/1‑140 (MQ=255)

                                                                                                 gACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCAt                                      >  2:1406166/1‑140 (MQ=255)

                                                                                                 gACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCAt                                      >  2:544324/1‑140 (MQ=255)

                                                                                                    cgccgAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCAtctc                                   >  2:650724/1‑140 (MQ=255)

                                                                                                    cgccgAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCAtctc                                   >  2:1054411/1‑140 (MQ=255)

                                                                                                      ccgAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCgg                                 >  2:1369625/1‑140 (MQ=255)

                                                                                                      ccgAGTCACCATGGGGATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCgg                                 >  1:632419/1‑140 (MQ=255)

                                                                                                                    ggATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAgcgc                   <  2:276687/140‑1 (MQ=255)

                                                                                                                    ggATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAgcgc                   >  1:47492/1‑140 (MQ=255)

                                                                                                                    ggATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAgcgc                   <  2:391070/140‑1 (MQ=255)

                                                                                                                     gATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAgcgta                  >  2:1309516/1‑138 (MQ=255)

                                                                                                                     gATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAGCGCa                  >  2:60555/1‑140 (MQ=255)

                                                                                                                     gATGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAGCGCa                  >  1:453882/1‑140 (MQ=255)

                                                                                                                       tGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAgcgc                   <  1:242777/137‑1 (MQ=255)

                                                                                                                       tGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAgcgc                   >  2:242777/1‑137 (MQ=255)

                                                                                                                       tGGTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAGCGCACg                >  2:1014736/1‑140 (MQ=255)

                                                                                                                        ggTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAGCGCACgg               <  1:612763/140‑1 (MQ=255)

                                                                                                                         gTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAGCGCACGGc              >  2:899092/1‑140 (MQ=255)

                                                                                                                         gTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAGCGCACGGc              >  1:495048/1‑140 (MQ=255)

                                                                                                                         gTATTTACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAGCGCACGGc              >  2:1103379/1‑140 (MQ=255)

                                                                                                                            tttACCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAGCGCACGGCcaa           >  2:455151/1‑140 (MQ=255)

                                                                                                                               aCCGATTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAGCGCACGGCcaacaa        >  1:1366072/1‑140 (MQ=255)

                                                                                                                               aCCGATTACGCCACCAACGACACGGGCAGATTTTTTAAAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGATTCAGGCGATCTCGGACATCTGGCAGCGCACGGCgaacaa        >  2:1250668/1‑140 (MQ=255)

                                                                                                                                   aTTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAGCGCACGGCCAACAATGAc    >  1:505888/1‑140 (MQ=255)

                                                                                                                                   aTTACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAGCGCACGGCCAACAATGAc    >  1:98773/1‑140 (MQ=255)

                                                                                                                                    ttACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAGCGCACGGCCAACAATGAcc   >  2:234257/1‑140 (MQ=255)

                                                                                                                                    ttACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAGCGCACGGCCAACAATGAcc   >  2:1216845/1‑140 (MQ=255)

                                                                                                                                    ttACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAGCGCACGGCCAACAATGAc    <  1:351850/139‑1 (MQ=255)

                                                                                                                                    ttACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAGCGCACGGCCAACAATGAc    >  2:351850/1‑139 (MQ=255)

                                                                                                                                     tACGCCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAGCGCACGGCCAACAATGACCg  >  2:485729/1‑140 (MQ=255)

CCGCAGAGTCGCCGTCGATAGAACCGAAGTTACCCTGACCGTCTACCAGCATATAACGCAGCGAGAATGGCTGCGCCATGCGGACGATCGTGTCATAGACCGCCGAGTCACCATGGGGATGGTATTTACCGATTACGTCACCAACGACACGGGCAGATTTTTTATAGGCTTTGTTCCAGTCATTGCCTAGTACGTTCATGGCGTAAAGTACGCGACGGTGTACCGGCTTCAGGCCATCTCGGACATCTGGCAGCGCACGGCCAACAATGACCG  >  NC_000913/2339069‑2339341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A