Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	159	82.1	2830106	99.3%	2810295	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,360,192	A→G	intergenic (‑40/+17)	yfaV ← / ← rhmD	putative transporter YfaV/L‑rhamnonate dehydratase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,360,192	0	A	G	100.0%	246.2 / NA	65	intergenic (‑40/+17)	yfaV/rhmD	putative transporter YfaV/L‑rhamnonate dehydratase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (36/29); total (36/29)

GAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCATTGAGCA  >  NC_000913/2360055‑2360324

gAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGc                                                                                                                                    <  2:688844/140‑1 (MQ=255)

 aaCGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCa                                                                                                                                   >  1:357207/1‑140 (MQ=255)

 aaCGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCa                                                                                                                                   >  1:50460/1‑140 (MQ=255)

     gTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGc                                                                                                                               <  2:866862/140‑1 (MQ=255)

      tCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGcc                                                                                                                              >  2:386900/1‑140 (MQ=255)

      tCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGcc                                                                                                                              >  1:1236936/1‑140 (MQ=255)

        gagaAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCg                                                                                                                            <  2:1410624/140‑1 (MQ=255)

        gagaAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCg                                                                                                                            <  1:399536/140‑1 (MQ=255)

          gaAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGa                                                                                                                          <  1:1049134/140‑1 (MQ=255)

          gaAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGa                                                                                                                          <  1:386900/140‑1 (MQ=255)

               gCCAGCACATACAGTGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGccc                                                                                                                             <  1:1115466/132‑1 (MQ=255)

               gCCAGCACATACAGTGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGccc                                                                                                                             >  2:1115466/1‑132 (MQ=255)

                ccAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGAtt                                                                                                                    >  1:665960/1‑140 (MQ=255)

                ccAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGAtt                                                                                                                    >  2:31878/1‑140 (MQ=255)

                   gCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGt                                                                                                                 <  2:357207/140‑1 (MQ=255)

                             cgcCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGt                                                                                                                 >  1:387061/1‑130 (MQ=255)

                             cgcCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGt                                                                                                                 <  2:387061/130‑1 (MQ=255)

                             cgcCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAggg                                                                                                       >  2:1028143/1‑140 (MQ=255)

                             cgcCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAggg                                                                                                       >  2:895956/1‑140 (MQ=255)

                             cgcCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAggg                                                                                                       >  2:1166/1‑140 (MQ=255)

                             cgcCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAggg                                                                                                       >  1:1372730/1‑140 (MQ=255)

                             cgcCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAggg                                                                                                       >  2:944278/1‑140 (MQ=255)

                             cgcCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCCCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAggg                                                                                                       >  1:558431/1‑140 (MQ=255)

                              gcCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAgggg                                                                                                      >  1:249809/1‑140 (MQ=255)

                                         cGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAAtt                                                                                           <  2:166424/140‑1 (MQ=255)

                                            aaTTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCa                                                                                        >  1:856766/1‑140 (MQ=255)

                                            aaTTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCa                                                                                        >  2:1067454/1‑140 (MQ=255)

                                            aaTTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCa                                                                                        >  1:393937/1‑140 (MQ=255)

                                              ttAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGt                                                                                      <  2:539763/140‑1 (MQ=255)

                                                     cacaCGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGAtt                                                                               <  2:1372730/140‑1 (MQ=255)

                                                      acacGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTg                                                                              >  2:1072938/1‑140 (MQ=255)

                                                                    caccacGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCaaa                                                                >  1:655092/1‑140 (MQ=255)

                                                                    caccacGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCaaa                                                                >  2:598476/1‑140 (MQ=255)

                                                                      ccacGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAAc                                                              >  2:439763/1‑140 (MQ=255)

                                                                      ccacGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAAc                                                              <  1:598476/140‑1 (MQ=255)

                                                                          ggCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCggg                                                          >  2:1374489/1‑140 (MQ=255)

                                                                                   cAAAGCGGTGCCCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAg                                                 <  2:558431/140‑1 (MQ=255)

                                                                                     aaGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCa                                               <  2:684174/140‑1 (MQ=255)

                                                                                     aaGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCa                                               <  1:1028143/140‑1 (MQ=255)

                                                                                     aaGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCa                                               <  1:1067454/140‑1 (MQ=255)

                                                                                     aaGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCa                                               <  1:1374489/140‑1 (MQ=255)

                                                                                     aaGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCa                                               <  2:655092/140‑1 (MQ=255)

                                                                                     aaGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCa                                               <  1:783936/140‑1 (MQ=255)

                                                                                      aGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCAc                                              >  1:560896/1‑140 (MQ=255)

                                                                                      aGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCAc                                              >  1:669375/1‑140 (MQ=255)

                                                                                        cGGTGCTCATAAAGAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTg                                            >  1:460941/1‑140 (MQ=255)

                                                                                         agTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGa                                           <  1:1259050/139‑1 (MQ=255)

                                                                                            gCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGAttt                                        <  2:560896/140‑1 (MQ=255)

                                                                                            gCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGAttt                                        <  1:895956/140‑1 (MQ=255)

                                                                                                       gCTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCC‑AAACCGGGTTTATCAAGCACTGATTTATGAATACGAcc                            >  1:657242/1‑140 (MQ=255)

                                                                                                        cTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGAttt                                        >  1:1031991/1‑128 (MQ=255)

                                                                                                        cTCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGAttt                                        <  2:1031991/128‑1 (MQ=255)

                                                                                                         tCCTTAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCa                           <  1:88815/140‑1 (MQ=255)

                                                                                                            ttAGAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTc                        >  2:377824/1‑140 (MQ=255)

                                                                                                               gAATATGTGGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCAcc                     <  1:661602/140‑1 (MQ=255)

                                                                                                                     gtgGGCGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAAcc               >  2:637051/1‑140 (MQ=255)

                                                                                                                          cGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTc          >  1:51670/1‑140 (MQ=255)

                                                                                                                          cGTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAACACTGATTTATGAATACGACCATTCACCGGAACCGGCTc          >  2:795838/1‑140 (MQ=255)

                                                                                                                           gTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCa         <  2:495023/140‑1 (MQ=255)

                                                                                                                           gTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCa         <  2:249809/140‑1 (MQ=255)

                                                                                                                           gTTACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCa         <  1:637051/140‑1 (MQ=255)

                                                                                                                            ttACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCAt        >  2:1243172/1‑140 (MQ=255)

                                                                                                                             tACCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCAtt       >  1:115107/1‑140 (MQ=255)

                                                                                                                              aCCGTTGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCATTg      >  2:99818/1‑140 (MQ=255)

                                                                                                                                  ttGTCACGGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCATTGAGCa  >  2:720495/1‑140 (MQ=255)

GAACGGTCGAGAAACGCCAGCACATACAGCGCCAACATAAACGGAATTAAACGCACACGGTTTTTCTTCACCACGGCGTCAAGCAAAGCGGTGCTCATAAAAAGCTCCTTAGAATATGTGGGCGTTACCGTTGTCACAGCAACGCCCGGAGTGATTAGTGGCTGTAGGGGCGTTTCAAATTGCAGTCACGATTGAGTTCGACGCCAAAACCGGGTTTATCAAGCACTGATTTATGAATACGACCATTCACCGGAACCGGCTCATTGAGCA  >  NC_000913/2360055‑2360324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A