Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 159 82.1 2830106 99.3% 2810295 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,389,335 C→T M1M (ATG→ATA) † aaeX ← DUF1656 domain‑containing protein AaeX

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,389,3350CT100.0% 339.6 / NA 94M1M (ATG→ATA) †aaeXDUF1656 domain‑containing protein AaeX
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (40/54);  total (40/54)

GATGCCAGACAAAGTCGTAGATACCTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTCATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATATTTAATATATTAGCGTAACTGTTATG  >  NC_000913/3389199‑3389470
                                                                                                                                        |                                                                                                                                       
gATGCCAGACAAAGTCGTAGATACCTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATg                                                                                                                                      <  1:279669/140‑1 (MQ=255)
gATGCCAGACAAAGTCGTAGATACCTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATg                                                                                                                                      >  2:647658/1‑140 (MQ=255)
   gCCAGACAAAGTCGTAGATACCTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTg                                                                                                                                   >  1:394162/1‑140 (MQ=255)
     cAGACAAAGTCGTAGATACCTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGAc                                                                                                                                 >  2:700880/1‑140 (MQ=255)
       gACAAAGTCGTAGATACCTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCt                                                                                                                               <  1:12161/140‑1 (MQ=255)
       gACAAAGTCGTAGATACCTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCt                                                                                                                               <  2:881685/140‑1 (MQ=255)
       gACAAAGTCGTAGATACCTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCt                                                                                                                               <  2:682169/140‑1 (MQ=255)
         cAAAGTCGTAGATACCTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTg                                                                                                                             <  1:700880/140‑1 (MQ=255)
         cAAAGTCGTAGATACCTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTg                                                                                                                             <  1:473548/140‑1 (MQ=255)
         cAAAGTCGTAGATACCTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTg                                                                                                                             <  1:61987/140‑1 (MQ=255)
          aaaGTCGTAGATACCTGTTGGTACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTgg                                                                                                                            >  2:480646/1‑140 (MQ=255)
           aaGTCGTAGATACCTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGt                                                                                                                           <  1:1214522/140‑1 (MQ=255)
           aaGTCGTAGATACCTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGt                                                                                                                           <  2:609967/140‑1 (MQ=255)
            aGTCGTAGATACCTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCt                                                                                                                               >  2:391574/1‑135 (MQ=255)
            aGTCGTAGATACCTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCt                                                                                                                               <  1:391574/135‑1 (MQ=255)
                 tAGATACCTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCt                                                                                                                               >  2:492364/1‑130 (MQ=255)
                 tAGATACCTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCt                                                                                                                               <  1:492364/130‑1 (MQ=255)
                      aCCTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAagagag                                                                                                                >  2:995854/1‑140 (MQ=255)
                        cTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCt                                                                                                                               <  1:1364663/123‑1 (MQ=255)
                        cTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCt                                                                                                                               >  2:656796/1‑123 (MQ=255)
                        cTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCt                                                                                                                               >  2:1364663/1‑123 (MQ=255)
                        cTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCt                                                                                                                               <  1:656796/123‑1 (MQ=255)
                        cTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAagagagag                                                                                                              >  1:960783/1‑140 (MQ=255)
                        cTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAagagagag                                                                                                              >  2:1047875/1‑140 (MQ=255)
                        cTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAagagagag                                                                                                              >  2:474947/1‑140 (MQ=255)
                        cTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAagagagag                                                                                                              >  2:155417/1‑140 (MQ=255)
                            tGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAgg                                                                                                          <  2:30324/140‑1 (MQ=255)
                                acaAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGtt                                                                                                      >  2:627354/1‑140 (MQ=255)
                                   aGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGttatt                                                                                                   >  1:1063108/1‑140 (MQ=255)
                                     tACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTtattat                                                                                                 >  1:1143628/1‑140 (MQ=255)
                                        ccGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTAtttt                                                                                              >  2:982636/1‑140 (MQ=255)
                                         cGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTc                                                                                             >  1:1008047/1‑140 (MQ=255)
                                          ggCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCa                                                                                            >  1:633126/1‑140 (MQ=255)
                                          ggCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCa                                                                                            >  2:553966/1‑140 (MQ=255)
                                            cgcACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGc                                                                                          >  1:1135977/1‑140 (MQ=255)
                                               tccagccagAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCg                                                                                                        <  1:11145/122‑1 (MQ=255)
                                               tccagccagAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCg                                                                                                        >  2:11145/2‑123 (MQ=255)
                                                ccagccagAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAA‑‑AGAGAGCAGGCGTTATTATTTTCAGCATCTGt                                                                                    <  1:612998/140‑1 (MQ=255)
                                                  agccagAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGt                                                                                    <  1:1047875/140‑1 (MQ=255)
                                                       gAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTcgccg                                                                               <  2:1105169/140‑1 (MQ=255)
                                                           aTCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCaga                                                                           <  2:1063108/140‑1 (MQ=255)
                                                            tCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCagag                                                                          <  2:1400858/140‑1 (MQ=255)
                                                             cGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAgaga                                                                         <  1:480646/140‑1 (MQ=255)
                                                             cGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAgaga                                                                         <  2:1008047/140‑1 (MQ=255)
                                                             cGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAgaga                                                                         <  1:221907/140‑1 (MQ=255)
                                                                 aGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAggg                                                                     <  1:704268/140‑1 (MQ=255)
                                                                    gATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCAt                                                                  <  1:982636/140‑1 (MQ=255)
                                                                              aTTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCgg                                                        <  2:1135977/140‑1 (MQ=255)
                                                                              aTTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCgg                                                        >  2:1231064/1‑140 (MQ=255)
                                                                               ttCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCggg                                                       >  2:683868/1‑140 (MQ=255)
                                                                               ttCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCggg                                                       >  2:813568/1‑140 (MQ=255)
                                                                               ttCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCggg                                                       >  2:1095815/1‑140 (MQ=255)
                                                                               ttCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCggg                                                       >  2:546579/1‑140 (MQ=255)
                                                                                      aaTATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGc                                                <  2:128939/140‑1 (MQ=255)
                                                                                        tatCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCaa                                              <  2:667896/140‑1 (MQ=255)
                                                                                        tatCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCaa                                              <  1:1367058/140‑1 (MQ=255)
                                                                                         atCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAAc                                             >  1:852326/1‑140 (MQ=255)
                                                                                         atCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAAc                                             >  2:565280/1‑140 (MQ=255)
                                                                                          tCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACa                                            <  2:244884/140‑1 (MQ=255)
                                                                                          tCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACa                                            <  1:553966/140‑1 (MQ=255)
                                                                                          tCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACa                                            <  2:966628/140‑1 (MQ=255)
                                                                                          tCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACa                                            <  1:155417/140‑1 (MQ=255)
                                                                                          tCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACa                                            <  1:1231064/140‑1 (MQ=255)
                                                                                          tCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACa                                            <  1:956624/140‑1 (MQ=255)
                                                                                          tCGGTGGGAACGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACa                                            <  1:970524/140‑1 (MQ=255)
                                                                                                ggAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTg                                      <  1:647658/140‑1 (MQ=255)
                                                                                                ggAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTg                                      <  1:46615/140‑1 (MQ=255)
                                                                                                  aaGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTa                                    <  1:546579/140‑1 (MQ=255)
                                                                                                   aGGACAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAg                                   >  2:114769/1‑140 (MQ=255)
                                                                                                       cAGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTg                               <  2:258289/140‑1 (MQ=255)
                                                                                                        aGCCCAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGa                              >  1:1053754/1‑140 (MQ=255)
                                                                                                          cccAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGata                            <  1:627354/140‑1 (MQ=255)
                                                                                                          cccAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGata                            <  1:565280/140‑1 (MQ=255)
                                                                                                          cccAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGata                            <  1:114769/140‑1 (MQ=255)
                                                                                                          cccAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGata                            >  2:990316/1‑140 (MQ=255)
                                                                                                            cAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATAtt                          <  1:813568/140‑1 (MQ=255)
                                                                                                            cAAACACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATAtt                          <  2:564813/140‑1 (MQ=255)
                                                                                                              aaCACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATATTTa                        <  2:85411/140‑1 (MQ=255)
                                                                                                              aaCACCACGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTACTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATATTTa                        <  2:1227979/140‑1 (MQ=255)
                                                                                                                   cacGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATATTTAatata                   >  1:155665/1‑140 (MQ=255)
                                                                                                                    acGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGata                            <  1:799324/130‑1 (MQ=255)
                                                                                                                    acGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGata                            >  2:799324/1‑130 (MQ=255)
                                                                                                                    acGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATATTTAatatat                  <  1:1102220/140‑1 (MQ=255)
                                                                                                                    acGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATATTTAatatat                  >  1:642896/1‑140 (MQ=255)
                                                                                                                     cGATAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATATTTAATATAtt                 >  1:9684/1‑140 (MQ=255)
                                                                                                                        tAACGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATATTTAATATATTAGc              >  1:739220/1‑140 (MQ=255)
                                                                                                                         aaCGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATATTTAATATATTAGCg             <  2:1143628/140‑1 (MQ=255)
                                                                                                                          aCGTGAAACAGACTTATGTTGACCGTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCGGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATATTTAATATATTAGCGt            <  2:813409/140‑1 (MQ=255)
                                                                                                                          aCGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATATTTAATATATTAGCGt            <  2:330816/140‑1 (MQ=255)
                                                                                                                           cGGGAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATATTTAATATATTAGCGTa           >  1:1012501/1‑140 (MQ=255)
                                                                                                                             ggAAACAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATATTTAATATATTAGCGTAAc         >  2:603312/1‑140 (MQ=255)
                                                                                                                                aaCAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATATTTAATATATTAGCGTAACTGt      >  1:1189812/1‑140 (MQ=255)
                                                                                                                                aaCAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATATTTAATATATTAGCGTAACTGt      >  1:1214898/1‑140 (MQ=255)
                                                                                                                                 aCAGACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATATTTAATATATTAGCGTAACTGtt     <  1:800993/140‑1 (MQ=255)
                                                                                                                                    gACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATATTTAATATATTAGCGTAACTGTTATg  <  2:394162/140‑1 (MQ=255)
                                                                                                                                    gACTTATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATATTTAATATATTAGCGTAACTGTTATg  <  2:24588/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
GATGCCAGACAAAGTCGTAGATACCTGTTGGCACAAGTACCCGGCGCACCAGCCAGAAAATCGCCAGTGATAAAAGCAATTCAAAAAATATCGGTGGGAAGGACAGCCCAAACACCACGATAACGGGAAACAGACTCATGTTGACCTTGGTTGTAAAGAGAGAGCAGGCGTTATTATTTTCAGCATCTGTCGCCGCAGAGAAGGGCATGGAAAGCCGGGCGAGAGCAACATTGCTGTAGATTGATATTTAATATATTAGCGTAACTGTTATG  >  NC_000913/3389199‑3389470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A