Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F28 I1 R1 227 52.0 1764248 99.3% 1751898 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,389,676 A→G T53A (ACA→GCA)  aaeR → LysR‑type transcriptional regulator AaeR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,389,6760AG100.0% 293.2 / NA 82T53A (ACA→GCA) aaeRLysR‑type transcriptional regulator AaeR
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (33/49);  total (33/49)

TCGGTGTTTGCCAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATGCCTTCAATAACACCCCCATCGGGACGCTACGCATTGGCTG  >  NC_000913/3389541‑3389812
                                                                                                                                       |                                                                                                                                        
tCGGTGTTTGCCAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACg                                                                                                                                      <  2:185829/140‑1 (MQ=255)
tCGGTGTTTGCCAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACg                                                                                                                                      <  1:528508/140‑1 (MQ=255)
tCGGTGTTTGCCAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACg                                                                                                                                      <  1:315622/140‑1 (MQ=255)
     gtTTGCCAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACgcagca                                                                                                                                 <  1:98731/140‑1 (MQ=255)
     gtTTGCCAAAGTAGTTGAATTCGGTTCTTTTACCGCCGCCGCCAGACAGATACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGGAGGTAAAGCTGTTAAACCGTAGCGCACgcagcg                                                                                                                                 <  2:607874/140‑2 (MQ=255)
      tttGCCAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCAt                                                                                                                                >  1:597220/1‑140 (MQ=255)
         gCCAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTgg                                                                                                                             >  2:156229/1‑140 (MQ=255)
          ccAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGc                                                                                                                            <  1:342361/140‑1 (MQ=255)
              agtagtTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGa                                                                                                                        >  2:613881/1‑140 (MQ=255)
              agtagtTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGa                                                                                                                        >  2:621188/1‑140 (MQ=255)
                    tGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAg                                                                                                                  >  2:487257/1‑140 (MQ=255)
                        tttGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGaa                                                                                                                   >  1:477483/1‑135 (MQ=255)
                        tttGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGaa                                                                                                                   <  2:477483/135‑1 (MQ=255)
                        tttGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCgg                                                                                                              <  1:838901/140‑1 (MQ=255)
                        tttGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCgg                                                                                                              <  1:613881/140‑1 (MQ=255)
                        tttGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGCCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGTGCACGCAGCATTGGCCTGACCGAAGCCgg                                                                                                              <  1:716441/140‑1 (MQ=255)
                          tGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTa                                                                                                            <  2:675675/140‑1 (MQ=255)
                             ctctTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGa                                                                                                                    <  1:311667/129‑1 (MQ=255)
                             ctctTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGa                                                                                                                    >  2:311667/1‑129 (MQ=255)
                               ctTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAAtt                                                                                                       <  1:487257/140‑1 (MQ=255)
                               ctTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAAtt                                                                                                       <  2:509507/140‑1 (MQ=255)
                                 tttACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTta                                                                                                     <  1:592126/140‑1 (MQ=255)
                                        ccgccgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAg                                                                                              >  1:299958/1‑140 (MQ=255)
                                          gccgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAggg                                                                                            >  2:63762/1‑140 (MQ=255)
                                          gccgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAggg                                                                                            >  2:420901/1‑140 (MQ=255)
                                          gccgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAggg                                                                                            <  1:63762/140‑1 (MQ=255)
                                          gccgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGGAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAggg                                                                                            >  2:790623/1‑140 (MQ=255)
                                           ccgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGc                                                                                           >  1:540167/1‑140 (MQ=255)
                                            cgccAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCt                                                                                          >  2:204947/1‑140 (MQ=255)
                                                aGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTg                                                                                         >  2:626969/1‑137 (MQ=255)
                                                aGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTg                                                                                         <  1:626969/137‑1 (MQ=255)
                                                    aGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCcgtcgt                                                                                  <  1:826232/140‑1 (MQ=255)
                                                    aGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCcgtcgt                                                                                  <  1:202886/140‑1 (MQ=255)
                                                      cTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTAt                                                                                >  2:385042/1‑140 (MQ=255)
                                                            aTGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCa                                                                          >  2:746826/1‑140 (MQ=255)
                                                             tGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCAt                                                                         <  2:862421/140‑1 (MQ=255)
                                                              gAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATg                                                                        >  2:589547/1‑140 (MQ=255)
                                                              gAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGATAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATg                                                                        <  2:185551/140‑1 (MQ=255)
                                                                gCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGT‑AAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAg                                                                     >  1:677728/1‑140 (MQ=255)
                                                                   tttCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTg                                                                   <  1:156229/140‑1 (MQ=255)
                                                                    ttCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGc                                                                  >  2:195006/1‑140 (MQ=255)
                                                                     tCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGcg                                                                 >  1:355810/1‑139 (MQ=255)
                                                                     tCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCa                                                                 >  2:879177/1‑140 (MQ=255)
                                                                      cGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTAt                                                                                >  2:870953/1‑124 (MQ=255)
                                                                      cGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTAt                                                                                <  1:870953/124‑1 (MQ=255)
                                                                      cGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAg                                                                >  1:106815/1‑140 (MQ=255)
                                                                              agtcagACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCa                                                        <  1:589547/140‑1 (MQ=255)
                                                                              agtcagACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCATCGTATGCTTCATGAAGTGCAGGATGTTCa                                                        >  1:838105/1‑140 (MQ=255)
                                                                              agtcagACGGTATCAAAACTGGAAGATGAGTTGCAGGT‑AAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCAt                                                       <  2:677728/140‑1 (MQ=255)
                                                                                tcagACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATg                                                      <  2:364135/140‑1 (MQ=255)
                                                                                tcagACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATg                                                      >  1:69025/1‑140 (MQ=255)
                                                                                  agACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAg                                                    <  1:746826/140‑1 (MQ=255)
                                                                                  agACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAg                                                    <  1:66108/140‑1 (MQ=255)
                                                                                   gACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGc                                                   <  1:241495/140‑1 (MQ=255)
                                                                                   gACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGc                                                   <  1:385042/140‑1 (MQ=255)
                                                                                      ggTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAAc                                                <  1:352847/140‑1 (MQ=255)
                                                                                        tATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTg                                              >  2:296421/1‑140 (MQ=255)
                                                                                         aTCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGt                                             <  2:69025/140‑1 (MQ=255)
                                                                                         aTCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGt                                             >  2:104106/1‑140 (MQ=255)
                                                                                          tCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTa                                            >  1:706272/1‑140 (MQ=255)
                                                                                          tCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTa                                            >  1:362074/1‑140 (MQ=255)
                                                                                          tCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTa                                            >  1:575707/1‑140 (MQ=255)
                                                                                            aaaaCTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATg                                          <  1:104106/140‑1 (MQ=255)
                                                                                            aaaaCTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATg                                          <  1:478080/140‑1 (MQ=255)
                                                                                            aaaaCTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATg                                          <  1:790623/140‑1 (MQ=255)
                                                                                            aaaaCTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATg                                          <  2:362074/140‑1 (MQ=255)
                                                                                                  ggAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATGCCTTCa                                    <  1:879177/140‑1 (MQ=255)
                                                                                                  ggAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATGCCTTCa                                    >  1:364130/1‑140 (MQ=255)
                                                                                                         gAGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATGCCTTCAATAacac                             <  2:706272/140‑1 (MQ=255)
                                                                                                          aGTTGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATGCCTTCAATAACAcc                            <  1:635109/140‑1 (MQ=255)
                                                                                                            ttGCAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATGCCTTCAATAACAcccc                          <  1:420901/140‑1 (MQ=255)
                                                                                                               cAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATGCCTTCAATAACGCCCCCAt                       <  1:204947/140‑1 (MQ=255)
                                                                                                               cAGGTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATGCCTTCAATAACACCCCCAt                       <  1:195006/140‑1 (MQ=255)
                                                                                                                 ggTAAAGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATGCCTTCAATAACACCCCCATCg                     <  2:597220/140‑1 (MQ=255)
                                                                                                                    aaaGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATGCCTTCAATAACACCCCCATCGGGa                  <  2:777951/140‑1 (MQ=255)
                                                                                                                    aaaGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATGCCTTCAATAACACCCCCATCGGGa                  <  2:464087/140‑1 (MQ=255)
                                                                                                                      aGCTGTTAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATGCCTTCAATAACACCCCCATCGGGACg                >  1:415785/1‑140 (MQ=255)
                                                                                                                      aGCTGTTAAACCGTAGCGCACGCAACATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTGTGCCTTCAATAACACCCCCATCGGGACg                <  2:684038/140‑1 (MQ=255)
                                                                                                                           ttAAACCGTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATGCCTTCAATAACACCCCCATCGGGACGCTACg           >  2:159870/1‑140 (MQ=255)
                                                                                                                                  gTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATGCCTTCAATAACACCCCCATCGGGACGCTACGCATTGGc    <  1:621188/140‑1 (MQ=255)
                                                                                                                                  gTAGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTCCATGAGCAACTGTATGCCTTCAATAACACCCCCATCGGGACGCTACGCATTGGc    <  1:257805/140‑1 (MQ=255)
                                                                                                                                    aGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATGCCTTCAATAACACCCCCATCGGGACGCTACGCATTGGCTg  <  1:82182/140‑1 (MQ=255)
                                                                                                                                    aGCGCACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATGCCTTCAATAACACCCCCATCGGGACGCTACGCATTGGCTg  <  1:159870/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
TCGGTGTTTGCCAAAGTAGTTGAATTTGGCTCTTTTACCGCCGCCGCCAGACAGCTACAGATGAGCGTTTCGTCCATCAGTCAGACGGTATCAAAACTGGAAGATGAGTTGCAGGTAAAGCTGTTAAACCGTAGCACACGCAGCATTGGCCTGACCGAAGCCGGTAGAATTTACTACCAGGGCTGCCGTCGTATGCTTCATGAAGTGCAGGATGTTCATGAGCAACTGTATGCCTTCAATAACACCCCCATCGGGACGCTACGCATTGGCTG  >  NC_000913/3389541‑3389812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A