Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 159 82.1 2830106 99.3% 2810295 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,219,155 A→G D187G (GAC→GGC)  aceK → isocitrate dehydrogenase kinase/phosphatase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,219,1550AG100.0% 312.4 / NA 84D187G (GAC→GGC) aceKisocitrate dehydrogenase kinase/phosphatase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (46/38);  total (46/38)

GACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGACAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTTGCTGCCGATCCACCAGACGGACGACGGC  >  NC_000913/4219019‑4219291
                                                                                                                                        |                                                                                                                                        
gACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCaa                                                                                                                                       >  1:206149/1‑140 (MQ=255)
    ttCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTc                                                                                                                                   >  2:1019791/1‑140 (MQ=255)
    ttCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTCCGCCTGCGCTGGCAGCATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTc                                                                                                                                   >  1:233343/1‑140 (MQ=255)
         cccGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGa                                                                                                                              <  1:805158/140‑1 (MQ=255)
         cccGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGa                                                                                                                              <  1:599083/140‑1 (MQ=255)
         cccGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGa                                                                                                                              <  1:1112663/140‑1 (MQ=255)
         cccGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGa                                                                                                                              <  1:1238878/140‑1 (MQ=255)
            gATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAg                                                                                                                           <  1:1097078/140‑1 (MQ=255)
            gATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAg                                                                                                                           <  1:1117161/140‑1 (MQ=255)
            gATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAg                                                                                                                           <  1:1279355/140‑1 (MQ=255)
            gATCACGGCTGGGAATCTCTACTGATGCGCGTTATCACCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAg                                                                                                                           <  2:1388274/140‑1 (MQ=255)
               cACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCa                                                                                                                        >  1:153407/1‑140 (MQ=255)
                            ctctACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGt                                                                                                               >  1:58089/1‑136 (MQ=255)
                            ctctACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGt                                                                                                               <  2:58089/136‑1 (MQ=255)
                              ctACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGcgaa                                                                                                         >  1:813947/1‑140 (MQ=255)
                                aCTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGcgaacg                                                                                                       >  1:224018/1‑140 (MQ=255)
                                aCTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGcgaacg                                                                                                       <  1:118573/140‑1 (MQ=255)
                                 cTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGcgaacga                                                                                                      <  2:945079/140‑1 (MQ=255)
                                   gATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCgaacgaac                                                                                                    >  1:1240125/1‑140 (MQ=255)
                                   gATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCgaacgaac                                                                                                    >  1:569907/1‑140 (MQ=255)
                                    aTGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACt                                                                                                   >  2:874495/1‑140 (MQ=255)
                                      gcgcGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGt                                                                                                 >  2:623277/1‑140 (MQ=255)
                                      gcgcGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGt                                                                                                 >  2:799255/1‑140 (MQ=255)
                                       cgcgTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGtt                                                                                                >  1:823443/1‑140 (MQ=255)
                                       cgcgTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGtt                                                                                                >  1:1233372/1‑140 (MQ=255)
                                       cgcgTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGtt                                                                                                >  1:138807/1‑140 (MQ=255)
                                       cgcgTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGtt                                                                                                >  2:996221/1‑140 (MQ=255)
                                        gcgTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGttt                                                                                               <  2:1240125/140‑1 (MQ=255)
                                              tCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGc                                                                                         >  2:1036090/1‑140 (MQ=255)
                                                    aCCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATCACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATaaa                                                                                   >  1:515102/1‑140 (MQ=255)
                                                      cTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAgc                                                                                 <  1:106092/140‑1 (MQ=255)
                                                        aCCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAgccg                                                                               >  2:1332883/1‑140 (MQ=255)
                                                        aCCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAgccg                                                                               >  1:647450/1‑140 (MQ=255)
                                                         ccGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAgccgc                                                                              <  2:823443/140‑1 (MQ=255)
                                                           gCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCct                                                                            <  1:996221/140‑1 (MQ=255)
                                                           gCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCct                                                                            <  1:623277/140‑1 (MQ=255)
                                                            ctgcgcctgcgcTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCctg                                                                           >  1:528395/1‑140 (MQ=255)
                                                            ctgcgcctgcgcTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCctg                                                                           >  2:154853/1‑140 (MQ=255)
                                                             tgcgcctgcgcTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCctgg                                                                          <  2:206149/140‑1 (MQ=255)
                                                               cgcctgcgcTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCctggct                                                                        >  1:161517/1‑140 (MQ=255)
                                                                 cctgcgcTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCctggctgg                                                                      <  2:161517/140‑1 (MQ=255)
                                                                 cctgcgcTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCctggctgg                                                                      <  1:1332883/140‑1 (MQ=255)
                                                                 cctgcgcTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCctggctgg                                                                      >  2:742071/1‑140 (MQ=255)
                                                                  ctgcgcTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGt                                                                     <  1:551537/140‑1 (MQ=255)
                                                                   tgcgcTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTa                                                                    >  1:968189/1‑140 (MQ=255)
                                                                    gcgcTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTCTTACCGCAATAAAGCCGCCTGGCTGGTAg                                                                   <  1:484317/140‑1 (MQ=255)
                                                                    gcgcTGGCAGAATAAAAGCCGTGACATCCATCACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAg                                                                   <  2:515102/140‑1 (MQ=255)
                                                                     cgcTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAgg                                                                  >  1:226871/1‑140 (MQ=255)
                                                                      gcTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGc                                                                 <  1:1036090/140‑1 (MQ=255)
                                                                        tGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCaa                                                               <  2:854726/140‑1 (MQ=255)
                                                                        tGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCaa                                                               <  1:799255/140‑1 (MQ=255)
                                                                                tAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATca                                                       >  2:1151690/1‑140 (MQ=255)
                                                                                  aaaGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGATCGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATcaca                                                     <  2:233343/140‑1 (MQ=255)
                                                                                  aaaGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATcaca                                                     <  2:813947/140‑1 (MQ=255)
                                                                                  aaaGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATcaca                                                     <  2:226871/140‑1 (MQ=255)
                                                                                  aaaGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATcaca                                                     <  2:1233372/140‑1 (MQ=255)
                                                                                  aaaGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATcaca                                                     <  1:154853/140‑1 (MQ=255)
                                                                                        gTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTcc                                               >  2:802633/1‑140 (MQ=255)
                                                                                        gTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTcc                                               >  1:746796/1‑140 (MQ=255)
                                                                                         tGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCg                                              >  1:1078103/1‑140 (MQ=255)
                                                                                                cattacattaTTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACAtt                                       >  1:722988/1‑140 (MQ=255)
                                                                                                     cattaTTCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCAt                                  >  1:446318/1‑140 (MQ=255)
                                                                                                      attattCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCAtt                                 >  1:417128/1‑140 (MQ=255)
                                                                                                      attattCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCAtt                                 >  2:1372727/1‑140 (MQ=255)
                                                                                                       ttattCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCAttt                                <  2:1078103/140‑1 (MQ=255)
                                                                                                          ttCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTtg                             >  1:1038329/1‑140 (MQ=255)
                                                                                                          ttCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTtg                             >  2:1364528/1‑140 (MQ=255)
                                                                                                          ttCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTtg                             >  1:1281578/1‑140 (MQ=255)
                                                                                                          ttCGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTtg                             >  2:1397151/1‑140 (MQ=255)
                                                                                                            cGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACAtt                                       <  2:456613/128‑1 (MQ=255)
                                                                                                            cGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACAtt                                       >  1:456613/1‑128 (MQ=255)
                                                                                                            cGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTtgct                           >  2:1227807/1‑140 (MQ=255)
                                                                                                            cGCCATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTtgct                           <  2:1038329/140‑1 (MQ=255)
                                                                                                              ccATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTtgctgc                         <  2:968189/140‑1 (MQ=255)
                                                                                                              ccATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTtgctgc                         <  2:266180/140‑1 (MQ=255)
                                                                                                               cATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTTGCTGcc                        <  2:138807/140‑1 (MQ=255)
                                                                                                               cATCTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTTGCTGcc                        >  2:1137547/1‑140 (MQ=255)
                                                                                                                  cTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTTGCTGCCGAt                     <  1:802633/140‑1 (MQ=255)
                                                                                                                  cTGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTTGCTGCCGAt                     >  1:60611/1‑140 (MQ=255)
                                                                                                                   tGACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTTGCTGCCGATc                    <  1:1151690/140‑1 (MQ=255)
                                                                                                                    gACGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTTGCTGCCGATcc                   >  1:54384/1‑140 (MQ=255)
                                                                                                                     aCGGAAACGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTTGCTGCCGATcca                  >  1:1233865/1‑140 (MQ=255)
                                                                                                                           aCGCTGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTTGCTGCCGATCCACCAgac            >  1:725439/1‑140 (MQ=255)
                                                                                                                               tGGGGACAGGCAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTTGCTGCCGATCCACCAgacggac        >  1:920630/1‑140 (MQ=255)
                                                                                                                                     caggcaACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTTGCTGCCGATCCACCAGACGGACGACGGc  <  1:1399017/140‑1 (MQ=255)
                                                                                                                                     caggcaACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTTGCTGCCGATCCACCAGACGGACGACGGc  <  1:1397151/140‑1 (MQ=255)
                                                                                                                                     caggcaACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTTGCTGCCGATCCACCAGACGGACGACGGc  <  2:417128/140‑1 (MQ=255)
                                                                                                                                     caggcaACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTTGCTGCCGATCCACCAGACGGACGACGGc  <  2:1233865/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
GACTTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGGAAACGCTGGGGACAGACAACCTCGCGGAAAGTCATTTACAGGTGGCGAACGAACTGTTTTACCGCAATAAAGCCGCCTGGCTGGTAGGCAAACTGATCACACCTTCCGGCACATTGCCATTTTTGCTGCCGATCCACCAGACGGACGACGGC  >  NC_000913/4219019‑4219291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A