Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 159 82.1 2830106 99.3% 2810295 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,424,463 (C)5→4 intergenic (+77/+53) ulaF → / ← yjfY L‑ribulose‑5‑phosphate 4‑epimerase UlaF/DUF1471 domain‑containing protein YjfY

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,424,4590C.100.0% 295.5 / NA 67intergenic (+73/+57)ulaF/yjfYL‑ribulose‑5‑phosphate 4‑epimerase UlaF/DUF1471 domain‑containing protein YjfY
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (27/40);  total (27/40)

CTTCCTGATGAATAAACACTTCATGCGTAAACACGGTCCTAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAGCCCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTCCCGCATCAGAATTACGTGGTAGTACGTT  >  NC_000913/4424323‑4424594
                                                                                                                                        |                                                                                                                                       
cTTCCTGATGAATAAACACTTCATGCGTAAACACGGTCCTAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAGcccc                                                                                                                                      >  2:716500/1‑140 (MQ=255)
     tgatgaATAAACACTTCATGCGTAAACACGGTCCTAATGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGa                                                                                                                                >  2:674523/1‑140 (MQ=255)
      gatgaATAAACACTTCATGCGTAAACACGGTCCTAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGaa                                                                                                                               <  1:630196/140‑1 (MQ=255)
      gatgaATAAACACTTCATGCGTAAACACGGTCCTAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGaa                                                                                                                               <  1:716500/140‑1 (MQ=255)
       atgaATAAACACTTCATGCGTAAACACGGTCCTAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAg                                                                                                                              >  1:490178/1‑140 (MQ=255)
           aTAAACACTTCATGCGTAAACACGGTCCTAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAggggg                                                                                                                          <  2:398355/140‑1 (MQ=255)
                cacTTCATGCGTAAACACGGTCCTAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGgcaaag                                                                                                                     <  1:148436/140‑1 (MQ=255)
                 acTTCATGCGTAAACACGGTCCTAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGgcaaagc                                                                                                                    >  1:654837/1‑140 (MQ=255)
                  cTTCATGCGTAAACACGGTCCTAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCGGCCGTTTTTAAAAAAAAAG‑CCCCTGCGAAGGGGgcaaagca                                                                                                                   <  2:1257144/140‑1 (MQ=255)
                  cTTCATGCGTAAACACGGTCCTAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGgcaaagca                                                                                                                   <  2:1253485/140‑1 (MQ=255)
                     cATGCGTAAACACGGTCCTAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAAc                                                                                                                >  1:1005736/1‑140 (MQ=255)
                       tGCGTAAACACGGTCCTAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCACAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTa                                                                                                              <  2:818584/140‑1 (MQ=255)
                         cGTAAACACGGTCCTAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATg                                                                                                            >  1:1091786/1‑140 (MQ=255)
                          gTAAACACGGTCCTAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATgg                                                                                                           <  2:1205272/140‑1 (MQ=255)
                             aaCACGGTCCTAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCaa                                                                                                        >  2:1222446/1‑140 (MQ=255)
                                 cGGTCCTAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGtt                                                                                                    <  2:490178/140‑1 (MQ=255)
                                    tCCTAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCg                                                                                                 <  1:1374330/140‑1 (MQ=255)
                                    tCCTAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCg                                                                                                 <  1:100739/140‑1 (MQ=255)
                                     ccTAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGt                                                                                                <  2:1005736/140‑1 (MQ=255)
                                       tAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTg                                                                                              <  1:51467/140‑1 (MQ=255)
                                        aaCGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTgg                                                                                             >  1:717761/1‑140 (MQ=255)
                                         aCGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGt                                                                                            <  1:442608/140‑1 (MQ=255)
                                         aCGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGt                                                                                            <  2:35070/140‑1 (MQ=255)
                                         aCGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGt                                                                                            <  2:654837/140‑1 (MQ=255)
                                          cGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGtt                                                                                           <  1:641170/140‑1 (MQ=255)
                                           gCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTta                                                                                          <  1:239869/140‑1 (MQ=255)
                                              tattaCGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATAc                                                                                       >  2:1180235/1‑140 (MQ=255)
                                              tattaCGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATAc                                                                                       >  2:885793/1‑140 (MQ=255)
                                                     ggCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCACAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGc                                                                                <  2:966885/140‑1 (MQ=255)
                                                     ggCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGc                                                                                >  2:1116639/1‑140 (MQ=255)
                                                      gCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCt                                                                               >  1:1014518/1‑140 (MQ=255)
                                                          aaGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTg                                                                                 <  2:622664/134‑1 (MQ=255)
                                                          aaGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTg                                                                                 >  1:622664/1‑134 (MQ=255)
                                                               gAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATaaa                                                                      >  2:1404363/1‑140 (MQ=255)
                                                                aaCACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGCCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAat                                                                     >  2:1059229/1‑140 (MQ=255)
                                                                  cacGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAatat                                                                   <  1:1116639/140‑1 (MQ=255)
                                                                    cgcgCTGCGGAAATTTCCTTCCTCGGGAGTTAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATcc                                                                 >  2:1280114/1‑140 (MQ=255)
                                                                    cgcgCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTg                                                                                 <  1:1265675/124‑1 (MQ=255)
                                                                    cgcgCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATcc                                                                 >  1:811500/1‑140 (MQ=255)
                                                                    cgcgCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATcc                                                                 >  1:711785/1‑140 (MQ=255)
                                                                    cgcgCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATcc                                                                 >  1:277925/1‑140 (MQ=255)
                                                                    cgcgCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGCCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTg                                                                                 >  2:1265675/1‑124 (MQ=255)
                                                                       gcTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCcgcg                                                              <  1:904096/140‑1 (MQ=255)
                                                                       gcTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCcgcg                                                              >  2:223990/1‑140 (MQ=255)
                                                                       gcTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCcgcg                                                              >  1:801664/1‑140 (MQ=255)
                                                                       gcTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCcgcg                                                              <  2:1077317/140‑1 (MQ=255)
                                                                        cTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑‑CCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCt                                                            <  2:434813/140‑1 (MQ=255)
                                                                           cGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTgg                                                          <  2:1091786/140‑1 (MQ=255)
                                                                            ggAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTGGc                                                         <  2:144670/140‑1 (MQ=255)
                                                                             gAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTGGCg                                                        <  2:1014518/140‑1 (MQ=255)
                                                                              aaaTTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTGGCGt                                                       <  1:282451/140‑1 (MQ=255)
                                                                                   tccttcctCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTGGCGTGCata                                                  <  1:1180235/140‑1 (MQ=255)
                                                                                       tcctCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTGGCGTGCat                                                   <  1:643155/135‑1 (MQ=255)
                                                                                       tcctCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTGGCGTGCat                                                   >  2:643155/1‑135 (MQ=255)
                                                                                                        gTCTAATTCCGCGGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTcc                             <  1:644282/140‑1 (MQ=255)
                                                                                                        gTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATGCCTGGTGCTAGCGATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTcc                             >  2:1199670/1‑140 (MQ=255)
                                                                                                        gTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTcc                             >  2:389857/1‑140 (MQ=255)
                                                                                                        gTCTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTcc                             >  2:238444/1‑140 (MQ=255)
                                                                                                          cTAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTCCCg                           <  2:217091/140‑1 (MQ=255)
                                                                                                           tAATTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTCCCGc                          >  2:748903/1‑140 (MQ=255)
                                                                                                            aaTTCCGCGGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTCCCGCa                         <  2:1317663/140‑1 (MQ=255)
                                                                                                            aaTTCCGCAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTCCCGCa                         <  2:831746/140‑1 (MQ=255)
                                                                                                                   cAGCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTCCCGCATCAGAAt                  >  2:717829/1‑140 (MQ=255)
                                                                                                                     gCCGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTCCCGCATCAGAATTa                <  1:389857/140‑1 (MQ=255)
                                                                                                                       cGTTTTTCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATGCCTGGTGCTAGCGATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTCCCGCATCAGAATTACg              <  1:1199670/140‑1 (MQ=255)
                                                                                                                            ttCAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTCCCGCATCAGAATTACGTGgta         <  1:1404363/140‑1 (MQ=255)
                                                                                                                              cAAAAAAAAG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTCCCGCATCAGAATTACGTGgtagt       <  2:454313/140‑1 (MQ=255)
                                                                                                                                   aaaaG‑CCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTCCCGCATCAGAATTACGTGGTAGTACGtt  <  1:1222446/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
CTTCCTGATGAATAAACACTTCATGCGTAAACACGGTCCTAACGCTTATTACGGGCAGAAGTAGAACACGCGCTGCGGAAATTTCCTTCCTCGGGAGATAACTGGTCTAATTCCGCAGCCGTTTTTCAAAAAAAAGCCCCCTGCGAAGGGGGCAAAGCAAACTATGGCAATGTTTCGTTGGTTATACCTGGTGCTAGCGATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTCCCGCATCAGAATTACGTGGTAGTACGTT  >  NC_000913/4424323‑4424594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A