Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F28 I1 R1	180	66.5	2263572	99.4%	2249990	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	123,073	G→A	Q19Q (CAG→CAA)	aceE →	pyruvate dehydrogenase E1 component

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	123,073	0	G	A	100.0%	292.2 / NA	81	Q19Q (CAG→CAA)	aceE	pyruvate dehydrogenase E1 component
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (45/36); total (45/36)

GTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGCACAGGTATCAGCAACTACATCAACACCA  >  NC_000913/122936‑123206

gTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGc                                                                                                                                     >  1:272777/1‑140 (MQ=255)

 tCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCg                                                                                                                                    >  2:20334/1‑140 (MQ=255)

       tGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGaa                                                                                                                              >  1:979242/1‑140 (MQ=255)

        gAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAAt                                                                                                                             >  1:340030/1‑140 (MQ=255)

           cTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCgg                                                                                                                          >  1:1098581/1‑140 (MQ=255)

           cTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCgg                                                                                                                          >  2:130778/1‑140 (MQ=255)

           cTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCgg                                                                                                                          >  1:938862/1‑140 (MQ=255)

              tCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCa                                                                                                                       <  2:979242/140‑1 (MQ=255)

              tCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCa                                                                                                                       >  1:694842/1‑140 (MQ=255)

              tCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCa                                                                                                                       >  1:544570/1‑140 (MQ=255)

               ccGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGt                                                                                                                         <  2:906261/137‑1 (MQ=255)

               ccGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGt                                                                                                                         >  1:906261/1‑137 (MQ=255)

                cGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATc                                                                                                                     <  2:308032/140‑1 (MQ=255)

                   cGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGt                                                                                                                  <  2:1098581/140‑1 (MQ=255)

                     agagTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTga                                                                                                                <  2:955415/140‑1 (MQ=255)

                       agTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGt                                                                                                                  >  2:349317/1‑136 (MQ=255)

                       agTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGt                                                                                                                  <  1:349317/136‑1 (MQ=255)

                       agTTCAATGGGACACGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTgaag                                                                                                              <  2:694842/140‑1 (MQ=255)

                        gTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTgaaga                                                                                                             >  2:940843/1‑140 (MQ=255)

                        gTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTgaaga                                                                                                             <  1:923527/140‑1 (MQ=255)

                                 gACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGa                                                                                                    >  2:536373/1‑140 (MQ=255)

                                 gACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGa                                                                                                    <  2:272777/140‑1 (MQ=255)

                                  aCAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGAGTTGAg                                                                                                   >  2:361424/1‑140 (MQ=255)

                                   cAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGc                                                                                                  <  2:340030/140‑1 (MQ=255)

                                    aGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCg                                                                                                 <  2:544570/140‑1 (MQ=255)

                                    aGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCg                                                                                                 <  1:323075/140‑1 (MQ=255)

                                      gTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTg                                                                                               <  1:536373/140‑1 (MQ=255)

                                      gTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTg                                                                                               >  1:370722/1‑140 (MQ=255)

                                      gTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTg                                                                                               >  1:633206/1‑140 (MQ=255)

                                       ttCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGc                                                                                              <  1:201123/140‑1 (MQ=255)

                                        tCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGGTCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCt                                                                                             <  1:903950/140‑1 (MQ=255)

                                        tCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCt                                                                                             <  2:633206/140‑1 (MQ=255)

                                        tCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCt                                                                                             <  1:276286/140‑1 (MQ=255)

                                        tCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGAGTTGAGCGTGCt                                                                                             <  1:361424/140‑1 (MQ=255)

                                                aCTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCt                                                                                     >  1:62368/1‑140 (MQ=255)

                                                aCTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCt                                                                                     >  2:353309/1‑140 (MQ=255)

                                                aCTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCt                                                                                     >  2:1044882/1‑140 (MQ=255)

                                                aCTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCt                                                                                     >  2:740725/1‑140 (MQ=255)

                                                aCTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCt                                                                                     >  2:127571/1‑140 (MQ=255)

                                                 cTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCt                                                                                             >  2:462897/1‑131 (MQ=255)

                                                 cTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCt                                                                                             <  1:462897/131‑1 (MQ=255)

                                                 cTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTg                                                                                    >  2:937045/1‑140 (MQ=255)

                                                  tCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGa                                                                                   <  1:937045/140‑1 (MQ=255)

                                                    aaCGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATc                                                                                 >  1:549692/1‑140 (MQ=255)

                                                           ttaGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAAc                                                                          >  2:8252/1‑140 (MQ=255)

                                                                tagataAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACtgctt                                                                     >  2:160783/1‑140 (MQ=255)

                                                                tagataAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACtgctt                                                                     >  1:162572/1‑140 (MQ=255)

                                                                   ataAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACtgcttgct                                                                  >  2:481354/1‑140 (MQ=255)

                                                                    taAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTg                                                                 <  1:1044882/140‑1 (MQ=255)

                                                                     aaGGAATAACCCATGTCAGAACGTTTCCCAAATGATGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCaa                                                                           >  2:76323/1‑129 (MQ=255)

                                                                     aaGGAATAACCCATGTCAGAACGTTTCCCAAATGATGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCaa                                                                           <  1:76323/129‑1 (MQ=255)

                                                                        gAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGc                                                             >  2:182599/1‑140 (MQ=255)

                                                                          aTAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGccc                                                           >  1:81754/1‑140 (MQ=255)

                                                                             aCCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCa                                                        >  1:654354/1‑140 (MQ=255)

                                                                             aCCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCa                                                        >  1:631360/1‑140 (MQ=255)

                                                                              cccATGTCAGAACGATTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGAGATCGAATAGGACATCCGAGAAGAAGGCGATGTGCGTGCTAAGTATCTGACCCACCAACTGCTTGCTGAAACCCGCaa                                                       >  2:321665/1‑140 (MQ=255)

                                                                                cATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAg                                                     >  2:377707/1‑140 (MQ=255)

                                                                                 aTGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAgg                                                    <  1:740725/140‑1 (MQ=255)

                                                                                 aTGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAgg                                                    <  2:631360/140‑1 (MQ=255)

                                                                                 aTGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAgg                                                    <  1:481354/140‑1 (MQ=255)

                                                                                  tGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGc                                                   >  2:109827/1‑140 (MQ=255)

                                                                                        aaCGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTa                                             >  2:227913/1‑140 (MQ=255)

                                                                                        aaCGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTa                                             >  2:655620/1‑140 (MQ=255)

                                                                                             ttCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGt                                        >  1:899829/1‑140 (MQ=255)

                                                                                              tCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTa                                       >  2:884005/1‑140 (MQ=255)

                                                                                               cccAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAg                                      >  1:642929/1‑140 (MQ=255)

                                                                                                 cAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGcc                                    <  2:370722/140‑1 (MQ=255)

                                                                                                   aaTGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGc                                  <  2:899829/140‑1 (MQ=255)

                                                                                                       aCGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGc                              >  2:614162/1‑140 (MQ=255)

                                                                                                       aCGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGc                              >  2:941900/1‑140 (MQ=255)

                                                                                                        cGTGGATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGca                             <  1:127571/140‑1 (MQ=255)

                                                                                                           ggATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGTATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGCACAg                          <  1:884005/140‑1 (MQ=255)

                                                                                                           ggATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGCACAg                          <  2:81754/140‑1 (MQ=255)

                                                                                                            gATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGc                                  <  1:964333/131‑1 (MQ=255)

                                                                                                            gATCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGc                                  >  2:964333/1‑131 (MQ=255)

                                                                                                              tCCGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGCACAGGTa                       <  2:1072313/140‑1 (MQ=255)

                                                                                                               ccGATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGCACAGGTAt                      <  2:8056/140‑1 (MQ=255)

                                                                                                                 gATCGAAACTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGCACAGGTATCa                    <  2:654354/140‑1 (MQ=255)

                                                                                                                      aaaCTCGCGACTGGCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGCACAGGTATCAGCAAc               <  1:182599/140‑1 (MQ=255)

                                                                                                                                   gCTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGCACAGGTATCAGCAACTACATCAACACCa  >  1:868364/1‑140 (MQ=255)

                                                                                                                                    cTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGCACAGGTATCAGCAACTACATc         >  1:99484/1‑132 (MQ=255)

                                                                                                                                    cTCCAAGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGCACAGGTATCAGCAACTACATc         <  2:99484/132‑1 (MQ=255)

GTCTTATTGAGCTTTCCGGCGAGAGTTCAATGGGACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCATGTCAGAACGTTTCCCAAATGACGTGGATCCGATCGAAACTCGCGACTGGCTCCAGGCGATCGAATCGGTCATCCGTGAAGAAGGTGTTGAGCGTGCTCAGTATCTGATCGACCAACTGCTTGCTGAAGCCCGCAAAGGCGGTGTAAACGTAGCCGCAGGCACAGGTATCAGCAACTACATCAACACCA  >  NC_000913/122936‑123206

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A