Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F28 I1 R1
|
180 |
66.5 |
2263572 |
99.4% |
2249990 |
138.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,949,276 |
T→C |
D416G (GAC→GGC) |
aspS ← |
aspartate‑‑tRNA ligase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,949,276 | 0 | T | C | 100.0%
| 227.5
/ NA
| 63 | D416G (GAC→GGC) | aspS | aspartate‑‑tRNA ligase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (29/34); total (29/34) |
TGCAGCCGTCATATCTTTCGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGTCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTACGATCCAGGATGTCTTCGATGATTTCTGCATTAAGG > NC_000913/1949143‑1949410
|
tGCAGCCGTCATATCTTTCGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTAc > 2:178085/1‑140 (MQ=255)
cAGCCGTCATATCTTTCGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTAccc > 2:958637/1‑140 (MQ=255)
cAGCCGTCATATCTTTCGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTAccc > 2:15128/1‑140 (MQ=255)
ccGTCATATCTTTCGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCATTACCCACt < 1:558115/140‑1 (MQ=255)
gTCATATCTTTCGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTAcc > 2:333309/1‑134 (MQ=255)
gTCATATCTTTCGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTAcc < 1:333309/134‑1 (MQ=255)
gTCATATCTTTCGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACttt > 2:173234/1‑140 (MQ=255)
atatCTTTCGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAg < 2:258409/140‑1 (MQ=255)
atatCTTTCGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAg < 2:415835/140‑1 (MQ=255)
atatCTTTCGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAg > 2:1005238/1‑140 (MQ=255)
tCTTTCGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGgcg < 1:178085/140‑1 (MQ=255)
tCTTTCGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGgcg < 2:1125640/140‑1 (MQ=255)
cTTTCGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGgcgc < 1:652319/140‑1 (MQ=255)
tttCGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCa < 1:958637/140‑1 (MQ=255)
tttCGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAAgcg > 2:216746/1‑138 (MQ=255)
tttCGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAAgcg < 1:216746/138‑1 (MQ=255)
cGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGAGCAAGGCCTTTACCCACTTTCAg > 1:1019835/1‑132 (MQ=255)
cGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGAGCAAGGCCTTTACCCACTTTCAg < 2:1019835/132‑1 (MQ=255)
cGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGgcgc > 1:791160/1‑136 (MQ=255)
cGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGgcgc < 2:791160/136‑1 (MQ=255)
aggtgaACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCAccc > 2:111968/1‑140 (MQ=255)
cGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGt > 1:550673/1‑140 (MQ=255)
gCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGcaaca > 1:286617/1‑140 (MQ=255)
aTTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAAt > 1:84681/1‑140 (MQ=255)
ccGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTc < 2:52456/140‑1 (MQ=255)
ccGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTAGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTc < 2:1040915/140‑1 (MQ=255)
tCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCGATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCttg > 2:781237/1‑140 (MQ=255)
tCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTc < 2:650217/137‑1 (MQ=255)
tCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTc > 1:650217/1‑137 (MQ=255)
tCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCttg > 2:117823/1‑140 (MQ=255)
gccgccTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTtgttgt < 2:84681/140‑1 (MQ=255)
gccgccTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTtgttgt < 2:286617/140‑1 (MQ=255)
gtcTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGaaaa > 1:170843/1‑140 (MQ=255)
tcTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAAt > 2:853330/1‑140 (MQ=255)
aCATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCg < 1:15128/140‑1 (MQ=255)
gATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCgg < 1:853330/140‑1 (MQ=255)
aTAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAATGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGc > 2:1028622/1‑140 (MQ=255)
cccACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTa < 1:173234/140‑1 (MQ=255)
cccACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTa < 2:311008/140‑1 (MQ=255)
cccACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTa < 1:1028622/140‑1 (MQ=255)
cccACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTa < 2:15561/140‑1 (MQ=255)
cccACAGCAGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTa < 2:802037/140‑1 (MQ=255)
ccACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTAc < 2:550673/140‑1 (MQ=255)
ccACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTAc < 1:111968/140‑1 (MQ=255)
caGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTACGAt < 1:381815/140‑1 (MQ=255)
tGCCCGTTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTa > 2:87815/1‑130 (MQ=255)
tGCCCGTTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTa < 1:87815/130‑1 (MQ=255)
tGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCATTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGACACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTACGATCCAGGa > 2:856713/1‑140 (MQ=255)
tGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTa > 2:502818/1‑130 (MQ=255)
tGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTa < 1:502818/130‑1 (MQ=255)
tGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTAc < 2:326810/131‑1 (MQ=255)
tGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTAc > 1:326810/1‑131 (MQ=255)
tGCCCATTTGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTACGATCCAGGa > 1:62497/1‑140 (MQ=255)
ttGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTACGa > 2:296684/1‑126 (MQ=255)
ttGCTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTACGa < 1:296684/126‑1 (MQ=255)
cTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTACGATCCAgg > 2:27715/1‑129 (MQ=255)
cTTTCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTACGATCCAgg < 1:27715/129‑1 (MQ=255)
ttCGTCGGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTACGATCCAGGATGTCTTCgatga > 1:1043190/1‑140 (MQ=255)
gtcgGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTACGATCCAGGATGTCTTCGATGAttt > 1:811798/1‑140 (MQ=255)
cgGTCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTACGATCCAGGATGTCTTCGATGATTTCt < 1:117823/140‑1 (MQ=255)
tCAGACCAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTACGATCCAGGATGTCTTCGATGATTTCTGCa > 1:742679/1‑140 (MQ=255)
gACCAAGGCCTTTACCCATTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGACACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTACGATCCAGGATGTCTTCGATGATTTCTGCATTa < 1:856713/140‑1 (MQ=255)
cAAGGCCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTACGATCCAGGATGTCTTCGATGATTTCTGCATTAAgg < 2:170843/140‑1 (MQ=255)
|
TGCAGCCGTCATATCTTTCGGTGAGGTGAACGGATGGTGCATTGCCGTCAGGCCGCCTTCACCGTCGTCTTCAAACATCGGGAAGTCGATAACCCACAGCGGTGCCCATTTGCTTTCGTCGGTCAGACCAAGGTCTTTACCCACTTTCAGGCGCAGTGCACCCATCGCGTCGGCAACAATTTTCTTGTTGTCGGCACCGAAGAAAATCATATCGCCATCTTGCGCGGCAGTACGATCCAGGATGTCTTCGATGATTTCTGCATTAAGG > NC_000913/1949143‑1949410
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
