Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 180 66.5 2263572 99.4% 2249990 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,221,126 G→A H288H (CAC→CAT)  bglX ← beta‑D‑glucoside glucohydrolase, periplasmic

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,221,1260GA100.0% 228.4 / NA 64H288H (CAC→CAT) bglXbeta‑D‑glucoside glucohydrolase, periplasmic
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (36/28);  total (36/28)

TCAACCCAGGCAGATACTTCGAGTAGTACTCGTCGCTCATGCTCATGTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCGTGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCAGCGCCACCATCACCGCGCCGCTGCCTGCGTCCAGCC  >  NC_000913/2220996‑2221262
                                                                                                                                  |                                                                                                                                        
tCAACCCAGGCAGATACTTCGAGTAGTACTCGTCGCTCATGCTCATGTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGaa                                                                                                                                 <  1:835396/140‑1 (MQ=255)
    cccAGGCAGATACTTCGAGTAGTACTCGTCGCTCATGCTCATGTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACgg                                                                                                                             >  2:580988/1‑140 (MQ=255)
         gCAGATACTTCGAGTAGTACTCGTCGCTCATGCTCATGTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATg                                                                                                                        >  1:472775/1‑140 (MQ=255)
              tACTTCGAGTAGTACTCGTCGCTCATGCTCATGTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCttt                                                                                                                   >  1:782334/1‑140 (MQ=255)
              tACTTCGAGTAGTACTCGTCGCTCATGCTCATGTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCttt                                                                                                                   >  2:607862/1‑140 (MQ=255)
              tACTTCGAGTAGTACTCGTCGCTCATGCTCATGTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGGCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGCGATGCCttt                                                                                                                   >  2:448979/1‑140 (MQ=255)
               aCTTCGAGTAGTACTCGTCGCTCATGCTCATGTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTa                                                                                                                  >  1:825356/1‑140 (MQ=255)
                cTTCGAGTAGTACTCGTCGCTCATGCTCATGTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTaa                                                                                                                 <  1:1044903/140‑1 (MQ=255)
                   cGAGTAGTACTCGTCGCTCATGCTCATGTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGc                                                                                                              >  1:241646/1‑140 (MQ=255)
                   cGAGTAGTACTCGTCGCTCATGCTCATGTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGc                                                                                                              >  1:471339/1‑140 (MQ=255)
                       tagtaCTCGTCGCTCATGCTCATGTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCa                                                                                                          >  1:1000772/1‑140 (MQ=255)
                       tagtaCTCGTCGCTCATGCTCATGTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCa                                                                                                          >  1:881281/1‑140 (MQ=255)
                           aCTCGTCGCTCATGCTCATGTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTgg                                                                                                      <  2:666650/140‑1 (MQ=255)
                            cTCGTCGCTCATGCTCATGTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGt                                                                                                     >  1:706034/1‑140 (MQ=255)
                               gtcgCTCATGCTCATGTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTcgc                                                                                                  >  2:184332/1‑140 (MQ=255)
                                tcgCTCATGCTCATGTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTcgcg                                                                                                 <  1:1002058/140‑1 (MQ=255)
                                  gctcatgctcatGTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCa                                                                                               <  2:471339/140‑1 (MQ=255)
                                  gctcatgctcatGTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCa                                                                                               <  2:706034/140‑1 (MQ=255)
                                    tcatgctcatgTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCATCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGa                                                                                             >  1:465287/1‑140 (MQ=255)
                                     catgctcatgTTGATTCCGGATTTCAGCGCCACGCGCACCGCACCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGaa                                                                                            <  2:1049040/140‑1 (MQ=255)
                                             tgTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTc                                                                                    >  2:1085510/1‑140 (MQ=255)
                                               ttGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTcag                                                                                  <  1:116964/140‑1 (MQ=255)
                                                 gATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTcagca                                                                                <  2:676348/140‑1 (MQ=255)
                                                  aTTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTcagcag                                                                               <  1:824417/140‑1 (MQ=255)
                                                    tCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATTATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGcc                                                                             >  1:268069/1‑140 (MQ=255)
                                                    tCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGcc                                                                             <  2:782334/140‑1 (MQ=255)
                                                    tCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGcc                                                                             >  2:444698/1‑140 (MQ=255)
                                                                cgcCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAgg                                                                 >  2:71946/1‑140 (MQ=255)
                                                                  ccACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGtg                                                               >  2:802409/1‑140 (MQ=255)
                                                                     cgcgCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAAt                                                                       <  1:1066923/129‑1 (MQ=255)
                                                                     cgcgCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAAt                                                                       >  2:1066923/1‑129 (MQ=255)
                                                                     cgcgCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGtggct                                                            >  2:576677/1‑140 (MQ=255)
                                                                      gcgcACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGtggctg                                                           >  2:129283/1‑140 (MQ=255)
                                                                       cgcACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGtggctgg                                                          >  1:819516/1‑140 (MQ=255)
                                                                           ccGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTg                                                      <  2:472775/140‑1 (MQ=255)
                                                                            cGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGc                                                     <  2:420858/140‑1 (MQ=255)
                                                                               aTCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCg                                                        <  2:903696/134‑1 (MQ=255)
                                                                               aTCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCg                                                        >  1:903696/1‑134 (MQ=255)
                                                                                 cTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTc                                                >  2:15925/1‑140 (MQ=255)
                                                                                       ggTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAg                                          <  2:881281/140‑1 (MQ=255)
                                                                                        gTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGt                                         >  2:495719/1‑140 (MQ=255)
                                                                                         tCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGtt                                        <  1:607862/140‑1 (MQ=255)
                                                                                           tGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCa                                      <  2:1000772/140‑1 (MQ=255)
                                                                                           tGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCa                                      >  1:107937/1‑140 (MQ=255)
                                                                                           tGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCa                                      <  1:15925/140‑1 (MQ=255)
                                                                                           tGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCa                                      <  1:636905/140‑1 (MQ=255)
                                                                                             ccgccgTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCAgc                                    >  2:374294/1‑140 (MQ=255)
                                                                                             ccgccgTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCAgc                                    >  1:655474/1‑140 (MQ=255)
                                                                                             ccgccgTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCAgc                                    <  2:819516/140‑1 (MQ=255)
                                                                                             ccgccgTGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCAgc                                    <  1:580988/140‑1 (MQ=255)
                                                                                                   tGCCATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCAGCGccacc                              >  2:302774/1‑140 (MQ=255)
                                                                                                     ccATGTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCAGCGCCACCAt                            <  2:258891/140‑1 (MQ=255)
                                                                                                         gTTTAATCAGCTCTTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCAGCGCCACCATCAcc                        <  1:802409/140‑1 (MQ=255)
                                                                                                                   ctctTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCAGCGCCACCATCACCGCGCCGctgc              >  2:520140/1‑140 (MQ=255)
                                                                                                                   ctctTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCAGCGCCACCATCACCGCGCCGctgc              >  2:274255/1‑140 (MQ=255)
                                                                                                                   ctctTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCAGCGCCACCATCACCGCGCCGctgc              >  1:1010258/1‑140 (MQ=255)
                                                                                                                    tctTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCAGCGCCACCATCACCGCGCCGctgcc             >  2:389416/1‑140 (MQ=255)
                                                                                                                    tctTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCAGCGCCACCATCACCGCGCCGctgcc             >  1:920557/1‑140 (MQ=255)
                                                                                                                     ctTTGATTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCAGCGCCACCATCACCGCGCCGctgcct            <  1:71946/140‑1 (MQ=255)
                                                                                                                          aTTGCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCAGCGCCACCATCACCGCGCCGCTGCCTGCGTc       <  1:274255/140‑1 (MQ=255)
                                                                                                                             gCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCAGCGCCACCATCACCGcgccg                  <  2:570025/126‑1 (MQ=255)
                                                                                                                             gCACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCAGCGCCACCATCACCGcgccg                  >  1:570025/1‑126 (MQ=255)
                                                                                                                              cACCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCAGCGCCACCATCACCGCGCCGCTGCCTGCGTCCAGc   >  1:410202/1‑140 (MQ=255)
                                                                                                                               aCCATGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCAGCGCCACCATCACCGCGCCGCTGCCTGCGTCCAGcc  <  2:772225/140‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                        
TCAACCCAGGCAGATACTTCGAGTAGTACTCGTCGCTCATGCTCATGTTGATTCCGGATTTCAGCGCCACGCGCACCGCATCTTCCGGGTCTGCCGCCGTGCCATGTTTAATCAGCTCTTTGATTGCACCGTGATCGGAAACGGTGATGCCTTTAAAGCCCCACTGGTCGCGCAGAACATCTTTCAGCAGCCAGGAATCGGAGGTGGCTGGCGTGCCGTTCAGCGAGTTCAGCGCCACCATCACCGCGCCGCTGCCTGCGTCCAGCC  >  NC_000913/2220996‑2221262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A